Golgb1 (golgin B1) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Golgb1 (golgin B1) Mus musculus
Analyze
Symbol: Golgb1
Name: golgin B1
RGD ID: 1557666
MGI Page MGI
Description: Predicted to be involved in chondrocyte proliferation. Located in cis-Golgi network. Is expressed in several structures, including embryo endoderm; face; limb bud; nervous system; and pancreas. Used to study cleft palate. Orthologous to human GOLGB1 (golgin B1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4930428L02Rik; 628101; 6330407A06Rik; AU042952; C130074L01Rik; F730017E11Rik; Gi; giantin; Gm6840; golgi autoantigen, golgin subfamily b, macroglogin 1; golgi autoantigen, golgin subfamily b, macrogolgin 1; golgin subfamily B member 1; KIAA4151; MGC183642; mKIAA4151
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391636,695,455 - 36,753,447 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1636,695,502 - 36,753,447 (+)EnsemblGRCm39 Ensembl
GRCm381636,875,093 - 36,933,085 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1636,875,140 - 36,933,085 (+)EnsemblGRCm38mm10GRCm38
MGSCv371636,885,097 - 36,933,171 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361636,793,436 - 36,852,320 (+)NCBIMGSCv36mm8
Celera1637,295,881 - 37,343,987 (+)NCBICelera
Cytogenetic Map16B3NCBI
cM Map1626.19NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Insertional mutation in the Golgb1 gene is associated with osteochondrodysplasia and systemic edema in the OCD rat. Katayama K, etal., Bone. 2011 Nov;49(5):1027-36. doi: 10.1016/j.bone.2011.08.001. Epub 2011 Aug 7.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:9260927   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:12040188   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073  
PMID:17967808   PMID:18799693   PMID:19838196   PMID:20809939   PMID:21267068   PMID:21565611   PMID:21795745   PMID:21873635   PMID:22572157   PMID:22792322   PMID:24491816   PMID:24586199  
PMID:26595272   PMID:27160897   PMID:27226319   PMID:27293546   PMID:28509431   PMID:28671696   PMID:31180501   PMID:33230847   PMID:35147267   PMID:35670107   PMID:38355793  


Genomics

Comparative Map Data
Golgb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391636,695,455 - 36,753,447 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1636,695,502 - 36,753,447 (+)EnsemblGRCm39 Ensembl
GRCm381636,875,093 - 36,933,085 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1636,875,140 - 36,933,085 (+)EnsemblGRCm38mm10GRCm38
MGSCv371636,885,097 - 36,933,171 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361636,793,436 - 36,852,320 (+)NCBIMGSCv36mm8
Celera1637,295,881 - 37,343,987 (+)NCBICelera
Cytogenetic Map16B3NCBI
cM Map1626.19NCBI
GOLGB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383121,663,201 - 121,749,966 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3121,663,199 - 121,749,966 (-)EnsemblGRCh38hg38GRCh38
GRCh373121,382,048 - 121,468,588 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363122,864,738 - 122,951,292 (-)NCBINCBI36Build 36hg18NCBI36
Build 343122,865,639 - 122,951,292NCBI
Celera3119,792,012 - 119,878,526 (-)NCBICelera
Cytogenetic Map3q13.33NCBI
HuRef3118,756,175 - 118,842,594 (-)NCBIHuRef
CHM1_13121,345,590 - 121,432,070 (-)NCBICHM1_1
T2T-CHM13v2.03124,383,093 - 124,471,671 (-)NCBIT2T-CHM13v2.0
Golgb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81177,348,573 - 77,406,165 (-)NCBIGRCr8
mRatBN7.21163,843,179 - 63,900,665 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1163,843,986 - 63,900,770 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1172,656,395 - 72,713,019 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01165,318,618 - 65,375,243 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01164,352,928 - 64,409,536 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01166,761,646 - 66,819,115 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1166,761,584 - 66,819,079 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01169,852,530 - 69,909,720 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41165,647,305 - 65,703,832 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11165,704,893 - 65,761,421 (-)NCBI
Celera1163,316,713 - 63,373,209 (-)NCBICelera
Cytogenetic Map11q21NCBI
Golgb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542721,021,894 - 21,105,049 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542721,022,369 - 21,108,448 (-)NCBIChiLan1.0ChiLan1.0
GOLGB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22119,620,315 - 119,710,409 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13119,625,092 - 119,715,193 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03118,765,467 - 118,852,005 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13125,673,966 - 125,760,826 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3125,673,966 - 125,760,584 (-)Ensemblpanpan1.1panPan2
GOLGB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13324,927,631 - 25,025,187 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3324,928,729 - 25,025,090 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3324,954,942 - 25,051,736 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03325,170,097 - 25,260,535 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3325,170,101 - 25,260,453 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13324,968,315 - 25,059,017 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03325,010,568 - 25,101,225 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03325,567,702 - 25,658,718 (-)NCBIUU_Cfam_GSD_1.0
Golgb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602129,372,227 - 129,436,201 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365368,085,777 - 8,149,986 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365368,085,805 - 8,149,764 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GOLGB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13138,754,789 - 138,847,245 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113138,754,803 - 138,847,254 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213148,381,843 - 148,474,839 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GOLGB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12259,124,023 - 59,223,181 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2259,143,188 - 59,223,656 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041107,101,367 - 107,196,704 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Golgb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473126,455,126 - 26,526,316 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473126,438,529 - 26,526,205 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Golgb1
1625 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1641
Count of miRNA genes:591
Interacting mature miRNAs:733
Transcripts:ENSMUST00000023534, ENSMUST00000039855, ENSMUST00000114812, ENSMUST00000134616, ENSMUST00000135406, ENSMUST00000135800, ENSMUST00000140266, ENSMUST00000152864
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11059560Lmr12b_mleishmaniasis resistance 12b (mouse)162879281362792952Mouse
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16841786490896888Mouse
1301841Lrnx9_mlearning-contextual 9 (mouse)Not determined161222536046225471Mouse
1302096Aod1a_mautoimmune ovarian dysgenesis 1a (mouse)Not determined163544664392573008Mouse
4141179Ipng3_mimprinted postnatal growth 3 (mouse)Not determined2277525257594076Mouse
38501069Tip4_mtuberculosis immunophenotype 4, IFN-g level (mouse)16431786444520363Mouse
26884432Zlq7_mzygomatic length QTL 7, 10 week (mouse)16381786464620363Mouse
11049571Lmr12c_mleishmaniasis resistance 12c (mouse)162879281362792952Mouse
1301086Lprm5_mlymphoproliferation modifier 5 (mouse)Not determined161184882445848923Mouse
27226768Tibl9_mtibia length 9, 5 week (mouse)16331786451420363Mouse
11059559Lmr12a_mleishmaniasis resistance 12a (mouse)162879281362792952Mouse
1301443Mopkd2_mmodifier of polycystic kidney disease progression 2 (mouse)Not determined16464631438646414Mouse
10043978Obq35_mobesity QTL 35 (mouse)Not determined16988163143881631Mouse
4142187Arrd3_mage-related retinal degeneration 3 (mouse)Not determined3252290965466552Mouse
1357763Lp1_mlymphocyte proliferation 1 (mouse)Not determined16654297965466552Mouse
1357517Bwtn1_mbody weight at necropsy 1 (mouse)Not determined162001932985600826Mouse
1300943Skts9_mskin tumor susceptibility 9 (mouse)Not determined16577525239775440Mouse
1301070Cypr1_mcytokine production 1 (mouse)Not determined163231279566312933Mouse
1300915Lmr12_mleishmaniasis resistance 12 (mouse)Not determined162879281362792952Mouse
1300656Bgeq15_mbody growth early QTL 15 (mouse)Not determined16577525239775440Mouse
4142236Pstc4_mperiosteal circumference 4 (mouse)Not determined161552290949523112Mouse
1300534Bmd15_mbone mineral density 15 (mouse)Not determined162193838355938574Mouse
11251724Ewc6_methanol withdrawal and consumption 6 (mouse)16822605242226052Mouse
1300987Skull23_mskull morphology 23 (mouse)Not determined16577525239775440Mouse
1301945Skl7_mskeletal size (tail length) 7 (mouse)Not determined16577525239775440Mouse
10045614Rapop6_mradiation-induced apoptosis 6 (mouse)Not determined161480292148803032Mouse
15092062Egrme4_mearly growth rate, maternal effect 4 (mouse)162521866444220250Mouse
27095908Scvln7_msacral vertebrae length 2, 5 week (mouse)16331786439820362Mouse
10412263Gvhd6_mgraft-versus host disease 6 (mouse)Not determined163606085745511148Mouse
27226785Feml12_mfemur length 12, 5 week (mouse)16331786464620363Mouse

Markers in Region
AU042952  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381636,932,841 - 36,932,940UniSTSGRCm38
MGSCv371636,932,927 - 36,933,026UniSTSGRCm37
Celera1637,343,743 - 37,343,842UniSTS
Cytogenetic Map16B3UniSTS
Whitehead/MRC_RH16354.96UniSTS
UniSTS:237505  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381636,919,164 - 36,919,382UniSTSGRCm38
MGSCv371636,919,250 - 36,919,468UniSTSGRCm37
Celera1637,330,066 - 37,330,284UniSTS
Cytogenetic Map16B3UniSTS
UniSTS:237506  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381636,932,020 - 36,932,325UniSTSGRCm38
MGSCv371636,932,106 - 36,932,411UniSTSGRCm37
Celera1637,342,922 - 37,343,227UniSTS
Cytogenetic Map16B3UniSTS
Grik1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11CUniSTS
Cytogenetic Map16C3.3UniSTS
Cytogenetic Map15B3UniSTS
Cytogenetic Map16B3UniSTS


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_030035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006522082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006522084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011245881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017316963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017316964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017316965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017316966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003951781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC154232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC154763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK015226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK020091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK081762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK085677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC040461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC042759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC055037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC061204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC150731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000023534   ⟹   ENSMUSP00000023534
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1636,695,503 - 36,696,000 (+)Ensembl
GRCm38.p6 Ensembl1636,875,141 - 36,875,638 (+)Ensembl
Ensembl Acc Id: ENSMUST00000039855   ⟹   ENSMUSP00000045239
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1636,706,496 - 36,753,447 (+)Ensembl
GRCm38.p6 Ensembl1636,886,134 - 36,933,085 (+)Ensembl
Ensembl Acc Id: ENSMUST00000114812   ⟹   ENSMUSP00000110460
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1636,695,530 - 36,753,447 (+)Ensembl
GRCm38.p6 Ensembl1636,875,168 - 36,933,085 (+)Ensembl
Ensembl Acc Id: ENSMUST00000134616   ⟹   ENSMUSP00000116503
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1636,695,564 - 36,709,763 (+)Ensembl
GRCm38.p6 Ensembl1636,875,202 - 36,889,401 (+)Ensembl
Ensembl Acc Id: ENSMUST00000135800
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1636,695,502 - 36,707,960 (+)Ensembl
GRCm38.p6 Ensembl1636,875,140 - 36,887,598 (+)Ensembl
Ensembl Acc Id: ENSMUST00000140266
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1636,751,762 - 36,752,435 (+)Ensembl
GRCm38.p6 Ensembl1636,931,400 - 36,932,073 (+)Ensembl
Ensembl Acc Id: ENSMUST00000152864
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1636,744,819 - 36,748,733 (+)Ensembl
GRCm38.p6 Ensembl1636,924,457 - 36,928,371 (+)Ensembl
RefSeq Acc Id: NM_030035   ⟹   NP_084311
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391636,705,373 - 36,753,447 (+)NCBI
GRCm381636,885,011 - 36,933,085 (+)NCBI
MGSCv371636,885,097 - 36,933,171 (+)RGD
Celera1637,295,881 - 37,343,987 (+)RGD
cM Map16 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006522082   ⟹   XP_006522145
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391636,695,455 - 36,753,444 (+)NCBI
GRCm381636,875,093 - 36,933,082 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006522084   ⟹   XP_006522147
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391636,695,455 - 36,753,444 (+)NCBI
GRCm381636,875,140 - 36,933,081 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011245881   ⟹   XP_011244183
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391636,695,535 - 36,753,443 (+)NCBI
GRCm381636,875,173 - 36,933,081 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017316963   ⟹   XP_017172452
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391636,695,489 - 36,753,443 (+)NCBI
GRCm381636,875,158 - 36,933,081 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017316964   ⟹   XP_017172453
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391636,695,486 - 36,753,443 (+)NCBI
GRCm381636,875,124 - 36,933,081 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017316965   ⟹   XP_017172454
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391636,695,504 - 36,753,443 (+)NCBI
GRCm381636,875,173 - 36,933,081 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017316966   ⟹   XP_017172455
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391636,695,528 - 36,753,443 (+)NCBI
GRCm381636,875,173 - 36,933,081 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249086   ⟹   XP_030104946
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391636,695,455 - 36,753,444 (+)NCBI
GRCm381636,875,122 - 36,933,081 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249087   ⟹   XP_030104947
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391636,695,512 - 36,753,443 (+)NCBI
GRCm381636,875,173 - 36,933,081 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249088   ⟹   XP_030104948
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391636,695,455 - 36,753,444 (+)NCBI
GRCm381636,875,093 - 36,933,082 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036159899   ⟹   XP_036015792
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391636,695,535 - 36,753,443 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003951781
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391636,695,489 - 36,753,443 (+)NCBI
GRCm381636,875,158 - 36,933,081 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_084311 (Get FASTA)   NCBI Sequence Viewer  
  XP_006522145 (Get FASTA)   NCBI Sequence Viewer  
  XP_006522147 (Get FASTA)   NCBI Sequence Viewer  
  XP_011244183 (Get FASTA)   NCBI Sequence Viewer  
  XP_017172452 (Get FASTA)   NCBI Sequence Viewer  
  XP_017172453 (Get FASTA)   NCBI Sequence Viewer  
  XP_017172454 (Get FASTA)   NCBI Sequence Viewer  
  XP_017172455 (Get FASTA)   NCBI Sequence Viewer  
  XP_030104946 (Get FASTA)   NCBI Sequence Viewer  
  XP_030104947 (Get FASTA)   NCBI Sequence Viewer  
  XP_030104948 (Get FASTA)   NCBI Sequence Viewer  
  XP_036015792 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH40461 (Get FASTA)   NCBI Sequence Viewer  
  AAH42759 (Get FASTA)   NCBI Sequence Viewer  
  AAH60254 (Get FASTA)   NCBI Sequence Viewer  
  AAI45222 (Get FASTA)   NCBI Sequence Viewer  
  AAI50732 (Get FASTA)   NCBI Sequence Viewer  
  BAB31989 (Get FASTA)   NCBI Sequence Viewer  
  BAD90373 (Get FASTA)   NCBI Sequence Viewer  
  BAE22199 (Get FASTA)   NCBI Sequence Viewer  
  BAE33253 (Get FASTA)   NCBI Sequence Viewer  
  BAE33256 (Get FASTA)   NCBI Sequence Viewer  
  EDK97946 (Get FASTA)   NCBI Sequence Viewer  
  EDK97947 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000023534.7
  ENSMUSP00000045239
  ENSMUSP00000045239.9
  ENSMUSP00000110460
  ENSMUSP00000110460.2
  ENSMUSP00000116503.2
RefSeq Acc Id: NP_084311   ⟸   NM_030035
- UniProtKB: B2RWW2 (UniProtKB/TrEMBL),   E9PVZ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006522145   ⟸   XM_006522082
- Peptide Label: isoform X1
- UniProtKB: B2RWW2 (UniProtKB/TrEMBL),   E9PVZ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006522147   ⟸   XM_006522084
- Peptide Label: isoform X1
- UniProtKB: B2RWW2 (UniProtKB/TrEMBL),   E9PVZ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011244183   ⟸   XM_011245881
- Peptide Label: isoform X2
- UniProtKB: B2RWW2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017172452   ⟸   XM_017316963
- Peptide Label: isoform X1
- UniProtKB: B2RWW2 (UniProtKB/TrEMBL),   E9PVZ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017172455   ⟸   XM_017316966
- Peptide Label: isoform X4
- UniProtKB: B2RWW2 (UniProtKB/TrEMBL),   E9QAH1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017172453   ⟸   XM_017316964
- Peptide Label: isoform X1
- UniProtKB: B2RWW2 (UniProtKB/TrEMBL),   E9PVZ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017172454   ⟸   XM_017316965
- Peptide Label: isoform X3
- UniProtKB: B2RWW2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030104948   ⟸   XM_030249088
- Peptide Label: isoform X4
- UniProtKB: B2RWW2 (UniProtKB/TrEMBL),   E9QAH1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030104946   ⟸   XM_030249086
- Peptide Label: isoform X2
- UniProtKB: B2RWW2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030104947   ⟸   XM_030249087
- Peptide Label: isoform X4
- UniProtKB: B2RWW2 (UniProtKB/TrEMBL),   E9QAH1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000110460   ⟸   ENSMUST00000114812
Ensembl Acc Id: ENSMUSP00000116503   ⟸   ENSMUST00000134616
Ensembl Acc Id: ENSMUSP00000045239   ⟸   ENSMUST00000039855
Ensembl Acc Id: ENSMUSP00000023534   ⟸   ENSMUST00000023534
RefSeq Acc Id: XP_036015792   ⟸   XM_036159899
- Peptide Label: isoform X5
- UniProtKB: B2RWW2 (UniProtKB/TrEMBL)

Promoters
RGD ID:6827610
Promoter ID:MM_KWN:20925
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000114812,   NM_134111,   OTTMUST00000060574,   OTTMUST00000060739,   OTTMUST00000060900,   OTTMUST00000060959,   OTTMUST00000061344,   UC007ZCZ.1,   UC007ZDD.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361636,874,836 - 36,875,917 (-)MPROMDB
RGD ID:8686144
Promoter ID:EPDNEW_M21103
Type:initiation region
Name:Golgb1_1
Description:Mus musculus golgi autoantigen, golgin subfamily b, macrogolgin1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381636,875,233 - 36,875,293EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1099447 AgrOrtholog
Ensembl Genes ENSMUSG00000034243 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000023534.7 UniProtKB/TrEMBL
  ENSMUST00000039855 ENTREZGENE
  ENSMUST00000039855.9 UniProtKB/TrEMBL
  ENSMUST00000114812 ENTREZGENE
  ENSMUST00000114812.9 UniProtKB/TrEMBL
  ENSMUST00000134616.8 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.1490 UniProtKB/TrEMBL
InterPro GOLGB1 UniProtKB/TrEMBL
KEGG Report mmu:224139 UniProtKB/TrEMBL
MGD MGI:1099447 ENTREZGENE
NCBI Gene Golgb1 ENTREZGENE
PANTHER GOLGIN SUBFAMILY B MEMBER 1 UniProtKB/TrEMBL
  PTHR18887 UniProtKB/TrEMBL
PhenoGen Golgb1 PhenoGen
UniProt B2RWW2 ENTREZGENE, UniProtKB/TrEMBL
  B7ZNF9_MOUSE UniProtKB/TrEMBL
  E9PVZ8 ENTREZGENE, UniProtKB/TrEMBL
  E9QAH1 ENTREZGENE, UniProtKB/TrEMBL
  Q3U286_MOUSE UniProtKB/TrEMBL
  Q3U289_MOUSE UniProtKB/TrEMBL
  Q3UYL3_MOUSE UniProtKB/TrEMBL
  Q571K1_MOUSE UniProtKB/TrEMBL
  Q6PAK0_MOUSE UniProtKB/TrEMBL
  Q80UY9_MOUSE UniProtKB/TrEMBL
  Q8CGE5_MOUSE UniProtKB/TrEMBL
  Q9CTU9_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-09-25 Golgb1  golgin B1  Golgb1  golgi autoantigen, golgin subfamily b, macrogolgin 1  Symbol and/or name change 5135510 APPROVED
2024-08-21 Golgb1  golgi autoantigen, golgin subfamily b, macrogolgin 1  Golgb1  golgin B1  Symbol and/or name change 5135510 APPROVED
2024-08-21 Golgb1  golgin B1  Golgb1  golgi autoantigen, golgin subfamily b, macrogolgin 1  Symbol and/or name change 5135510 APPROVED
2024-08-21 Golgb1  golgi autoantigen, golgin subfamily b, macrogolgin 1  Golgb1  golgin B1  Symbol and/or name change 5135510 APPROVED
2023-04-18 Golgb1  golgin B1  Golgb1  golgi autoantigen, golgin subfamily b, macrogolgin 1  Symbol and/or name change 5135510 APPROVED