Higd1a (HIG1 domain family, member 1A) - Rat Genome Database
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Gene: Higd1a (HIG1 domain family, member 1A) Mus musculus
Analyze
Symbol: Higd1a
Name: HIG1 domain family, member 1A
RGD ID: 1557641
MGI Page MGI
Description: Involved in several processes, including cellular response to glucose starvation; cellular response to hypoxia; and negative regulation of release of cytochrome c from mitochondria. Localizes to mitochondrial inner membrane and nucleus. Orthologous to human HIGD1A (HIG1 hypoxia inducible domain family member 1A); INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2210020B17Rik; 7420700H20Rik; AI303276; AW049839; Hig; Hig1; HIG1 domain family member 1A; HIG1 domain family member 1A, mitochondrial; HIM; HIMP1; hypoxia induced gene 1; hypoxia-inducible gene 1 protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm9790  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399121,677,623 - 121,686,862 (-)NCBIGRCm39mm39
GRCm389121,848,557 - 121,857,796 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9121,848,563 - 121,858,362 (-)EnsemblGRCm38mm10GRCm38
MGSCv379121,757,678 - 121,767,118 (-)NCBIGRCm37mm9NCBIm37
MGSCv369121,697,261 - 121,706,324 (-)NCBImm8
Celera9122,323,317 - 122,332,728 (-)NCBICelera
Cytogenetic Map9F4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4-diaminotoluene  (EXP)
2,4-dinitrotoluene  (ISO)
2-hydroxypropanoic acid  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,3',5-triiodo-L-thyronine  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4-hydroxyphenyl retinamide  (EXP)
aflatoxin B1  (ISO)
ammonium chloride  (ISO)
Aroclor 1254  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
carbon nanotube  (EXP)
chloropicrin  (ISO)
clozapine  (EXP)
cobalt dichloride  (ISO)
cocaine  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (EXP,ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dicrotophos  (ISO)
dioxygen  (EXP)
diuron  (ISO)
doxorubicin  (ISO)
finasteride  (ISO)
fluoranthene  (EXP)
flutamide  (ISO)
glafenine  (ISO)
haloperidol  (EXP)
methapyrilene  (ISO)
methotrexate  (EXP)
methylmercury chloride  (ISO)
mifepristone  (ISO)
nefazodone  (ISO)
nickel dichloride  (EXP,ISO)
nimesulide  (ISO)
oxaliplatin  (ISO)
paracetamol  (EXP)
perfluorooctanoic acid  (ISO)
phenylephrine  (ISO)
pirinixic acid  (EXP,ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
Soman  (ISO)
sulindac  (ISO)
tamoxifen  (EXP)
Tesaglitazar  (ISO)
tetrachloromethane  (EXP)
tolcapone  (ISO)
topotecan  (ISO)
triclosan  (ISO)
tungsten  (EXP)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:16602821   PMID:16815968   PMID:17170753   PMID:17967808  
PMID:18614015   PMID:18799693   PMID:21856340   PMID:21873635   PMID:22405070   PMID:23646141   PMID:24457600   PMID:25683712   PMID:26554594   PMID:31089410  


Genomics

Comparative Map Data
Higd1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399121,677,623 - 121,686,862 (-)NCBIGRCm39mm39
GRCm389121,848,557 - 121,857,796 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9121,848,563 - 121,858,362 (-)EnsemblGRCm38mm10GRCm38
MGSCv379121,757,678 - 121,767,118 (-)NCBIGRCm37mm9NCBIm37
MGSCv369121,697,261 - 121,706,324 (-)NCBImm8
Celera9122,323,317 - 122,332,728 (-)NCBICelera
Cytogenetic Map9F4NCBI
HIGD1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl342,784,298 - 42,804,531 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl342,782,908 - 42,804,490 (-)EnsemblGRCh38hg38GRCh38
GRCh38342,782,908 - 42,804,490 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37342,824,400 - 42,846,027 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36342,799,404 - 42,821,031 (-)NCBINCBI36hg18NCBI36
Celera342,764,774 - 42,783,944 (-)NCBI
Cytogenetic Map3p22.1NCBI
HuRef342,870,039 - 42,889,209 (-)NCBIHuRef
CHM1_1342,775,554 - 42,796,009 (-)NCBICHM1_1
Higd1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.08130,482,492 - 130,491,888 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8130,482,493 - 130,491,998 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08129,660,254 - 129,669,650 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48127,076,654 - 127,085,885 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18127,096,390 - 127,105,621 (+)NCBI
Celera8120,638,935 - 120,648,165 (-)NCBICelera
Cytogenetic Map8q32NCBI
Higd1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542028,045,410 - 28,049,758 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542028,040,320 - 28,050,723 (+)NCBIChiLan1.0ChiLan1.0
HIGD1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1343,754,154 - 43,773,553 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0342,692,771 - 42,710,654 (-)NCBIMhudiblu_PPA_v0panPan3
HIGD1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12311,893,117 - 11,903,934 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Higd1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366952,330,939 - 2,341,387 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HIGD1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1326,278,208 - 26,286,199 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11326,278,202 - 26,286,334 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21328,946,329 - 28,954,443 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HIGD1A
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1224,239,323 - 4,255,547 (-)NCBI
Higd1a
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473076,944,785 - 76,954,873 (+)NCBI

Position Markers
AI303276  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389121,848,706 - 121,848,870UniSTSGRCm38
MGSCv379121,757,824 - 121,757,988UniSTSGRCm37
Celera9122,323,463 - 122,323,627UniSTS
Cytogenetic Map9F4UniSTS
Whitehead/MRC_RH91224.51UniSTS
AW049839  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389121,852,504 - 121,852,589UniSTSGRCm38
GRCm38385,915,781 - 85,915,866UniSTSGRCm38
MGSCv379121,761,622 - 121,761,707UniSTSGRCm37
MGSCv37385,719,703 - 85,719,788UniSTSGRCm37
Celera9122,327,263 - 122,327,348UniSTS
Celera385,941,815 - 85,941,900UniSTS
Cytogenetic Map9F4UniSTS
Cytogenetic Map3F1UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:354
Count of miRNA genes:257
Interacting mature miRNAs:302
Transcripts:ENSMUST00000060251
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001357837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_019814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA414831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB253941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC165080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF141312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI303276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AX105365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY028386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY028387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC021594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC090259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC132371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC151191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE457620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE689839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU851504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY652712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ042199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ042267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ053971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000060251   ⟹   ENSMUSP00000054881
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,848,563 - 121,858,362 (-)Ensembl
RefSeq Acc Id: ENSMUST00000213124   ⟹   ENSMUSP00000149531
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,849,539 - 121,857,535 (-)Ensembl
RefSeq Acc Id: ENSMUST00000213147   ⟹   ENSMUSP00000150962
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,850,166 - 121,857,567 (-)Ensembl
RefSeq Acc Id: ENSMUST00000214988   ⟹   ENSMUSP00000149331
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,850,230 - 121,856,595 (-)Ensembl
RefSeq Acc Id: ENSMUST00000215007   ⟹   ENSMUSP00000150629
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,848,563 - 121,857,612 (-)Ensembl
RefSeq Acc Id: ENSMUST00000215300   ⟹   ENSMUSP00000150726
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,849,538 - 121,857,562 (-)Ensembl
RefSeq Acc Id: ENSMUST00000216914   ⟹   ENSMUSP00000150189
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,850,191 - 121,857,613 (-)Ensembl
RefSeq Acc Id: NM_001357837   ⟹   NP_001344766
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,677,623 - 121,686,862 (-)NCBI
GRCm389121,848,557 - 121,857,796 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001357838   ⟹   NP_001344767
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,677,623 - 121,686,862 (-)NCBI
GRCm389121,848,557 - 121,857,796 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001357839   ⟹   NP_001344768
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,677,623 - 121,686,862 (-)NCBI
GRCm389121,848,557 - 121,857,796 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001357840   ⟹   NP_001344769
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,677,623 - 121,686,862 (-)NCBI
GRCm389121,848,557 - 121,857,796 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001357841   ⟹   NP_001344770
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,677,623 - 121,686,862 (-)NCBI
GRCm389121,848,557 - 121,857,796 (-)NCBI
Sequence:
RefSeq Acc Id: NM_019814   ⟹   NP_062788
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,677,623 - 121,686,862 (-)NCBI
GRCm389121,848,557 - 121,857,796 (-)NCBI
MGSCv379121,757,678 - 121,767,118 (-)RGD
Celera9122,323,317 - 122,332,728 (-)RGD
cM Map9 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_062788   ⟸   NM_019814
- UniProtKB: Q9JLR9 (UniProtKB/Swiss-Prot),   Q1XG81 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001344770   ⟸   NM_001357841
RefSeq Acc Id: NP_001344769   ⟸   NM_001357840
RefSeq Acc Id: NP_001344768   ⟸   NM_001357839
RefSeq Acc Id: NP_001344767   ⟸   NM_001357838
RefSeq Acc Id: NP_001344766   ⟸   NM_001357837
RefSeq Acc Id: ENSMUSP00000150189   ⟸   ENSMUST00000216914
RefSeq Acc Id: ENSMUSP00000150962   ⟸   ENSMUST00000213147
RefSeq Acc Id: ENSMUSP00000149531   ⟸   ENSMUST00000213124
RefSeq Acc Id: ENSMUSP00000054881   ⟸   ENSMUST00000060251
RefSeq Acc Id: ENSMUSP00000150726   ⟸   ENSMUST00000215300
RefSeq Acc Id: ENSMUSP00000150629   ⟸   ENSMUST00000215007
RefSeq Acc Id: ENSMUSP00000149331   ⟸   ENSMUST00000214988
Protein Domains
HIG1

Promoters
RGD ID:6844663
Promoter ID:MM_KWN:59218
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_019814,   UC009SEC.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369121,766,671 - 121,767,272 (-)MPROMDB
RGD ID:8671276
Promoter ID:EPDNEW_M13668
Type:initiation region
Name:Higd1a_1
Description:Mus musculus HIG1 domain family, member 1A , transcript variant5, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13669  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389121,857,564 - 121,857,624EPDNEW
RGD ID:8671278
Promoter ID:EPDNEW_M13669
Type:initiation region
Name:Higd1a_2
Description:Mus musculus HIG1 domain family, member 1A , transcript variant5, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13668  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389121,857,972 - 121,858,032EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1930666 AgrOrtholog
Ensembl Genes ENSMUSG00000038412 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000054881 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000149331 UniProtKB/TrEMBL
  ENSMUSP00000149531 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000150189 UniProtKB/TrEMBL
  ENSMUSP00000150629 UniProtKB/TrEMBL
  ENSMUSP00000150726 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000150962 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000060251 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000213124 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000213147 UniProtKB/TrEMBL
  ENSMUST00000214988 UniProtKB/TrEMBL
  ENSMUST00000215007 UniProtKB/TrEMBL
  ENSMUST00000215300 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000216914 UniProtKB/TrEMBL
InterPro Hypoxia_induced_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:56295 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1930666 ENTREZGENE
NCBI Gene 56295 ENTREZGENE
Pfam HIG_1_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Higd1a PhenoGen
PROSITE HIG1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Mm.347915 ENTREZGENE
  Mm.391698 ENTREZGENE
UniProt A0A1L1SR69_MOUSE UniProtKB/TrEMBL
  A0A1L1ST61_MOUSE UniProtKB/TrEMBL
  A0A1L1SV00_MOUSE UniProtKB/TrEMBL
  HIG1A_MOUSE UniProtKB/Swiss-Prot
  Q1XG81 ENTREZGENE, UniProtKB/TrEMBL
  Q8R472_MOUSE UniProtKB/TrEMBL
  Q9JLR9 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-26 Higd1a  HIG1 domain family, member 1A  Hig1    Data Merged 737654 PROVISIONAL