Irak1 (interleukin-1 receptor-associated kinase 1) - Rat Genome Database
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Gene: Irak1 (interleukin-1 receptor-associated kinase 1) Mus musculus
Analyze
Symbol: Irak1
Name: interleukin-1 receptor-associated kinase 1
RGD ID: 1557574
MGI Page MGI
Description: Exhibits interleukin-1 receptor binding activity and protein kinase activity. Involved in several processes, including regulation of transcription, DNA-templated; response to molecule of bacterial origin; and toll-like receptor signaling pathway. Localizes to lipid droplet; membrane; and protein-containing complex. Is expressed in several structures, including liver; skeletal muscle; and urinary system. Human ortholog(s) of this gene implicated in ankylosing spondylitis; diffuse scleroderma; psoriatic arthritis; and squamous cell carcinoma. Orthologous to human IRAK1 (interleukin 1 receptor associated kinase 1); PARTICIPATES IN interleukin-1 signaling pathway; Toll-like receptor signaling pathway; apoptotic cell death pathway; INTERACTS WITH (S)-nicotine; 1,2-dimethylhydrazine; 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AA408924; Il; Il1rak; interleukin-1 receptor-associated kinase-1; interleukin-1 receptor-associated kinase-1b; IRA; IRAK; IRAK-1; IRAK1-S; IRAK1b; mP; mPLK; P; pelle-like protein kinase; Plpk
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X73,057,520 - 73,067,527 (-)NCBIGRCm39mm39
GRCm38X74,013,914 - 74,023,921 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX74,013,914 - 74,023,918 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X71,259,253 - 71,269,260 (-)NCBIGRCm37mm9NCBIm37
MGSCv36X70,267,692 - 70,276,641 (-)NCBImm8
CeleraX65,266,305 - 65,276,311 (-)NCBICelera
Cytogenetic MapXA7.3NCBI
cM MapX37.61NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-nicotine  (EXP)
1,2-dimethylhydrazine  (EXP)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2-amino-2-deoxy-D-galactopyranose  (EXP)
2-methylcholine  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
5-fluorouracil  (ISO)
acrylamide  (ISO)
arsenous acid  (ISO)
atorvastatin calcium  (ISO)
atrazine  (ISO)
auranofin  (EXP)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (ISO)
bortezomib  (ISO)
cadmium dichloride  (EXP)
cadmium selenide  (ISO)
caffeine  (EXP)
cannabidiol  (EXP)
carbamazepine  (ISO)
carbon nanotube  (EXP)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
curcumin  (EXP,ISO)
cyclosporin A  (EXP,ISO)
deoxynivalenol  (EXP)
dextran  (EXP)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
dioxygen  (ISO)
doxorubicin  (ISO)
enalapril  (ISO)
enzyme inhibitor  (ISO)
erlotinib hydrochloride  (ISO)
ethanol  (EXP)
fenamidone  (EXP)
finasteride  (ISO)
flavonoids  (ISO)
flutamide  (ISO)
folic acid  (EXP,ISO)
Fusaric acid  (ISO)
genistein  (ISO)
ginsenoside Re  (EXP)
glafenine  (ISO)
glycyrrhetinate  (EXP)
glycyrrhetinic acid  (EXP)
helenalin  (EXP)
hydrogen peroxide  (ISO)
kaempferol  (ISO)
leflunomide  (ISO)
lipoarabinomannan  (EXP)
lipopolysaccharide  (EXP,ISO)
malathion  (ISO)
methotrexate  (ISO)
Monobutylphthalate  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
N-methyl-N'-nitro-N-nitrosoguanidine  (EXP)
nefazodone  (ISO)
nicotine  (EXP)
nimesulide  (ISO)
o-anisidine  (ISO)
obeticholic acid  (ISO)
okadaic acid  (EXP)
paracetamol  (EXP,ISO)
pentachlorophenol  (EXP)
phorbol 13-acetate 12-myristate  (EXP,ISO)
pirinixic acid  (EXP)
potassium chromate  (ISO)
progesterone  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (EXP)
sunitinib  (ISO)
tacrolimus hydrate  (EXP)
telmisartan  (ISO)
tetrachloromethane  (EXP)
titanium atom  (ISO)
titanium dioxide  (ISO)
Tylophorine  (ISO)
valdecoxib  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)
xanthones  (EXP)
zinc oxide  (EXP)
zinc protoporphyrin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
activation of NF-kappaB-inducing kinase activity  (ISO)
aging  (ISO)
cellular response to heat  (ISO)
cellular response to hypoxia  (ISO)
cellular response to lipopolysaccharide  (IBA)
cytokine-mediated signaling pathway  (IBA,IDA,ISO)
immune system process  (IEA)
innate immune response  (IBA,IEP)
interleukin-1-mediated signaling pathway  (IBA,IDA,ISO)
intracellular signal transduction  (IBA)
JNK cascade  (ISO)
lipopolysaccharide-mediated signaling pathway  (IDA,ISO)
negative regulation of cholesterol efflux  (IMP)
negative regulation of NF-kappaB transcription factor activity  (ISO)
negative regulation of transcription, DNA-templated  (IMP)
phosphorylation  (IEA)
positive regulation of I-kappaB kinase/NF-kappaB signaling  (IBA,ISO)
positive regulation of JUN kinase activity  (IMP)
positive regulation of leukocyte adhesion to vascular endothelial cell  (ISO)
positive regulation of MAP kinase activity  (IBA,IMP)
positive regulation of NF-kappaB transcription factor activity  (IBA,IDA,ISO)
positive regulation of NIK/NF-kappaB signaling  (ISO)
positive regulation of smooth muscle cell proliferation  (ISO)
positive regulation of type I interferon production  (ISO)
protein autophosphorylation  (IDA,ISO)
protein phosphorylation  (ISO)
regulation of cytokine-mediated signaling pathway  (ISO)
response to interleukin-1  (ISO)
response to lipopolysaccharide  (IDA,ISO)
response to peptidoglycan  (IDA)
signal transduction  (IEA)
toll-like receptor 2 signaling pathway  (IBA,IDA,ISO)
toll-like receptor 4 signaling pathway  (IBA,IDA)
type I interferon signaling pathway  (ISO)

Cellular Component
cytoplasm  (IBA)
cytosol  (ISO,TAS)
lipid droplet  (IDA)
membrane  (IDA,ISO)
nucleoplasm  (ISO)
nucleus  (IBA)
plasma membrane  (IBA)
protein-containing complex  (IDA,ISO)

References

References - curated
1. Belarbi K, etal., J Neuroinflammation. 2012 Jan 25;9:23. doi: 10.1186/1742-2094-9-23.
2. Chao W, etal., J Biol Chem. 2005 Jun 10;280(23):21997-2005. Epub 2005 Mar 26.
3. Chatzikyriakidou A, etal., Scand J Immunol. 2010 May;71(5):382-5. doi: 10.1111/j.1365-3083.2010.02381.x.
4. Dieude P, etal., Arthritis Rheum. 2011 Dec;63(12):3979-87. doi: 10.1002/art.30640.
5. Halkein J, etal., J Clin Invest. 2013 May 1;123(5):2143-54. doi: 10.1172/JCI64365. Epub 2013 Apr 24.
6. Hung PS, etal., PLoS One. 2013 Nov 26;8(11):e79926. doi: 10.1371/journal.pone.0079926.
7. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
8. Kumar H, etal., Int Rev Immunol. 2011 Feb;30(1):16-34.
9. MGD data from the GO Consortium
10. MGD IEA
11. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
12. Pipeline to import KEGG annotations from KEGG into RGD
13. Pipeline to import Pathway Interaction Database annotations from NCI into RGD
14. Reed JC, etal., Genome Res 2003 Jun;13(6B):1376-88.
15. RGD automated import pipeline
16. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
17. RGD automated import pipeline for gene-chemical interactions
18. Thomas JA, etal., Am J Physiol Heart Circ Physiol. 2003 Aug;285(2):H597-606.
19. Verstrepen L, etal., Cell Mol Life Sci. 2008 Oct;65(19):2964-78.
20. Weber A, etal., Sci Signal. 2010 Jan 19;3(105):cm1. doi: 10.1126/scisignal.3105cm1.
21. Xia P, etal., Immunol Lett. 2012 Dec 17;148(2):151-62. doi: 10.1016/j.imlet.2012.09.004. Epub 2012 Sep 24.
22. Yang YF, etal., Neuroscience. 2011 Nov 24;196:25-34. doi: 10.1016/j.neuroscience.2011.08.059. Epub 2011 Sep 10.
Additional References at PubMed
PMID:8663605   PMID:8889548   PMID:8905588   PMID:9530638   PMID:9625767   PMID:10190904   PMID:10224059   PMID:10349636   PMID:10395695   PMID:10465784   PMID:10549626   PMID:10673339  
PMID:10723722   PMID:10754329   PMID:10854325   PMID:10885754   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11096118   PMID:12054681   PMID:12370331   PMID:12418963   PMID:12477932  
PMID:12566447   PMID:12626533   PMID:12855817   PMID:14610273   PMID:14660668   PMID:14673102   PMID:15102471   PMID:15292196   PMID:15465816   PMID:15555532   PMID:15747579   PMID:15767370  
PMID:15782199   PMID:15829295   PMID:15849359   PMID:15896328   PMID:15952741   PMID:16046709   PMID:16141072   PMID:16141073   PMID:16247769   PMID:16365459   PMID:16831874   PMID:16917541  
PMID:17379480   PMID:17477969   PMID:17485511   PMID:17507369   PMID:17548806   PMID:17785432   PMID:18180283   PMID:18276832   PMID:18287559   PMID:18347055   PMID:18378686   PMID:18411265  
PMID:18438411   PMID:18460603   PMID:18562480   PMID:18682563   PMID:18691762   PMID:18824541   PMID:19104650   PMID:19273233   PMID:19329491   PMID:19378012   PMID:19380824   PMID:19483718  
PMID:19540456   PMID:19752193   PMID:19773084   PMID:19850916   PMID:20044140   PMID:20061547   PMID:20200270   PMID:20619458   PMID:21160042   PMID:21295571   PMID:21357541   PMID:21435586  
PMID:21441935   PMID:21460221   PMID:21677750   PMID:21743479   PMID:21873635   PMID:22007846   PMID:22011580   PMID:22037600   PMID:22059479   PMID:22227568   PMID:22364946   PMID:22514649  
PMID:22706082   PMID:22995519   PMID:23011808   PMID:23055935   PMID:23066149   PMID:23117333   PMID:23117655   PMID:23143987   PMID:23396947   PMID:23404570   PMID:23856940   PMID:23918981  
PMID:24043892   PMID:24084649   PMID:24193737   PMID:24248603   PMID:24379360   PMID:24706909   PMID:24972244   PMID:24987958   PMID:26048146   PMID:26512959   PMID:26561545   PMID:26732763  
PMID:27178629   PMID:27807192   PMID:28572512   PMID:28731142   PMID:28811005   PMID:28882891   PMID:29038250   PMID:29058172   PMID:29288795   PMID:29505740   PMID:29804558   PMID:29995830  
PMID:30078230   PMID:30108181   PMID:30361091   PMID:30391544   PMID:31883536  


Genomics

Comparative Map Data
Irak1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X73,057,520 - 73,067,527 (-)NCBIGRCm39mm39
GRCm38X74,013,914 - 74,023,921 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX74,013,914 - 74,023,918 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X71,259,253 - 71,269,260 (-)NCBIGRCm37mm9NCBIm37
MGSCv36X70,267,692 - 70,276,641 (-)NCBImm8
CeleraX65,266,305 - 65,276,311 (-)NCBICelera
Cytogenetic MapXA7.3NCBI
cM MapX37.61NCBI
IRAK1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX154,010,506 - 154,019,902 (-)EnsemblGRCh38hg38GRCh38
GRCh38X154,010,507 - 154,019,984 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X153,275,957 - 153,285,342 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X152,929,151 - 152,938,536 (-)NCBINCBI36hg18NCBI36
Build 34X152,796,808 - 152,806,189NCBI
CeleraX153,509,662 - 153,519,047 (-)NCBI
Cytogenetic MapXq28NCBI
HuRefX141,927,208 - 141,942,770 (-)NCBIHuRef
CHM1_1X153,150,366 - 153,159,748 (-)NCBICHM1_1
Irak1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0X156,716,469 - 156,726,367 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX156,716,604 - 156,725,977 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01152,464,303 - 152,474,397 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X159,960,184 - 159,969,180 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1136,116,523 - 136,125,519 (+)NCBICelera
Cytogenetic MapXq37NCBI
Irak1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955580661,609 - 668,622 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955580663,651 - 668,622 (-)NCBIChiLan1.0ChiLan1.0
IRAK1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X153,446,827 - 153,458,189 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX153,446,827 - 153,460,602 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X143,560,802 - 143,570,185 (-)NCBIMhudiblu_PPA_v0panPan3
IRAK1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 EnsemblX121,819,432 - 121,862,576 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1X121,853,340 - 121,862,582 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Irak1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936809891,407 - 900,311 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IRAK1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX124,717,612 - 124,724,860 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X124,717,604 - 124,724,855 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X142,283,035 - 142,290,286 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IRAK1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X128,433,462 - 128,443,126 (-)NCBI
ChlSab1.1 EnsemblX128,433,465 - 128,443,043 (-)Ensembl
Irak1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624946613,392 - 618,459 (-)NCBI

Position Markers
D9Mit34.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map2C1.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11B4UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map1E3UniSTS
Cytogenetic Map5E1UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map16B3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map19D3UniSTS
Cytogenetic Map1H5UniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map9DUniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map17DUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map13A1UniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map12A3UniSTS
Cytogenetic Map1H2.1UniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map7B1UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map5C3.1UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map2C2UniSTS
Cytogenetic Map19CUniSTS
Cytogenetic Map17E1.3UniSTS
Cytogenetic Map5A1UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map13A5UniSTS
Cytogenetic MapXA1.1UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map3A3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map8CUniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map1H1UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map1A2UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map5G1.3UniSTS
Cytogenetic Map7D1-E2UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map1H2.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map15F2UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map1H4-H6UniSTS
Cytogenetic Map12D2UniSTS
Cytogenetic Map1G3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map1H3UniSTS
Cytogenetic Map19BUniSTS
cM Map950.0UniSTS
Whitehead Genetic943.7UniSTS
RH125824  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X74,014,809 - 74,015,023UniSTSGRCm38
MGSCv37X71,260,148 - 71,260,362UniSTSGRCm37
CeleraX65,267,199 - 65,267,413UniSTS
Cytogenetic MapXA7.3UniSTS
Whitehead/MRC_RHX866.34UniSTS
REN88550  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X74,023,407 - 74,023,650UniSTSGRCm38
MGSCv37X71,268,746 - 71,268,989UniSTSGRCm37
CeleraX65,275,797 - 65,276,040UniSTS
Cytogenetic MapXA7.3UniSTS
REN88551  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X74,023,444 - 74,023,667UniSTSGRCm38
MGSCv37X71,268,783 - 71,269,006UniSTSGRCm37
CeleraX65,275,834 - 65,276,057UniSTS
Cytogenetic MapXA7.3UniSTS
D11Bhm20  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map12D1UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map4E1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map13D2UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map16C4UniSTS
Cytogenetic Map3G1UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map7B1-B2UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic Map10D2UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map11A3.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map19BUniSTS
cM Map1144.15UniSTS
Il1rak  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X74,022,207 - 74,022,342UniSTSGRCm38
MGSCv37X71,267,546 - 71,267,681UniSTSGRCm37
CeleraX65,274,597 - 65,274,732UniSTS
Cytogenetic MapXA7.3UniSTS
cM MapX29.6UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X55000000150000000Mouse
25314318Sccor2_msynaptonemal complex length to mean MLH1 count ratio 2 (mouse)X7150000097500000Mouse
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7360056151324042Mouse
25314316Mlh1fc3_mMLH1 foci count 3 (mouse)X6230000090800000Mouse
12879918Shm4_msperm head morphology 4 (mouse)X73028444103019114Mouse
25314311Syncl3_msynaptonemal complex length 3 (mouse)X5290000090700000Mouse
13464140Hdlq108_mHDL QTL 108 (mouse)X5872835492728354Mouse
4141665Mhysq2_mmale hybrid sterility QTL 2 (mouse)Not determined72410246140302463Mouse
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined48090244130864007Mouse
4142200Rtwq1_mreduced testis weight QTL 1 (mouse)Not determined4243170076431843Mouse
4141565Pbwg21_mpostnatal body weight growth 21 (mouse)Not determinedX4006835474068454Mouse
1300702Fcsa4_mfemoral cross-sectional area 4 (mouse)Not determinedX4698383880983961Mouse
10412108Desp5_mdespair 5 (mouse)Not determinedX5567874589678745Mouse
13208567Bmiq12_mbody mass index QTL 12 (mouse)X3600000078000000Mouse
1301009Pbwg7_mpostnatal body weight growth 7 (mouse)Not determinedX4006835474068454Mouse
1357730Hstx1_mhybrid sterility, X chromosome 1 (mouse)Not determinedX7241024678557206Mouse
1300794Spha2_msperm head anomaly 2 (mouse)Not determinedX4083262187216531Mouse
1301278Bdln1_mbody length 1 (mouse)Not determinedX4265674676656858Mouse

miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Mir146mmu-miR-146a-5pMirtarbaseexternal_infoWestern blotFunctional MTI19596990
Mir146mmu-miR-146a-5pMirtarbaseexternal_infoImmunoblot//Luciferase reporter assay//qRT-PCR//WeFunctional MTI20850013
Mir146mmu-miR-146a-3pMirecordsexternal_infoNANA18791161

Predicted Target Of
Summary Value
Count of predictions:4372
Count of miRNA genes:820
Interacting mature miRNAs:1106
Transcripts:ENSMUST00000033769, ENSMUST00000068286, ENSMUST00000101458, ENSMUST00000114352, ENSMUST00000114353, ENSMUST00000114354, ENSMUST00000114360, ENSMUST00000124417, ENSMUST00000124580, ENSMUST00000126583, ENSMUST00000128436, ENSMUST00000128759, ENSMUST00000132144, ENSMUST00000138397, ENSMUST00000140130, ENSMUST00000144353, ENSMUST00000145677, ENSMUST00000146210, ENSMUST00000148317, ENSMUST00000148706, ENSMUST00000149809, ENSMUST00000149871
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001177973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001177974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001177975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001177976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_008363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB088370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB088390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC091472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF103876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF121351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK009132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL672002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY184362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY184363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY184364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC004778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP760087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY729815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U56773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000033769   ⟹   ENSMUSP00000033769
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX74,014,971 - 74,023,913 (-)Ensembl
RefSeq Acc Id: ENSMUST00000068286   ⟹   ENSMUSP00000064448
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX74,013,926 - 74,023,915 (-)Ensembl
RefSeq Acc Id: ENSMUST00000101458   ⟹   ENSMUSP00000099001
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX74,015,440 - 74,023,745 (-)Ensembl
RefSeq Acc Id: ENSMUST00000114352   ⟹   ENSMUSP00000109992
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX74,013,918 - 74,023,915 (-)Ensembl
RefSeq Acc Id: ENSMUST00000114353   ⟹   ENSMUSP00000109993
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX74,015,440 - 74,023,745 (-)Ensembl
RefSeq Acc Id: ENSMUST00000114354   ⟹   ENSMUSP00000109994
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX74,013,914 - 74,023,918 (-)Ensembl
RefSeq Acc Id: ENSMUST00000114360   ⟹   ENSMUSP00000110000
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX74,013,926 - 74,023,915 (-)Ensembl
RefSeq Acc Id: ENSMUST00000124417   ⟹   ENSMUSP00000116167
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX74,022,229 - 74,022,944 (-)Ensembl
RefSeq Acc Id: ENSMUST00000124580   ⟹   ENSMUSP00000117379
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX74,022,187 - 74,023,173 (-)Ensembl
RefSeq Acc Id: ENSMUST00000126583   ⟹   ENSMUSP00000115508
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX74,017,130 - 74,022,496 (-)Ensembl
RefSeq Acc Id: ENSMUST00000128436   ⟹   ENSMUSP00000118570
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX74,015,372 - 74,019,941 (-)Ensembl
RefSeq Acc Id: ENSMUST00000128759
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX74,023,095 - 74,023,831 (-)Ensembl
RefSeq Acc Id: ENSMUST00000132144   ⟹   ENSMUSP00000117042
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX74,021,000 - 74,023,091 (-)Ensembl
RefSeq Acc Id: ENSMUST00000138397   ⟹   ENSMUSP00000121016
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX74,016,548 - 74,020,988 (-)Ensembl
RefSeq Acc Id: ENSMUST00000140130
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX74,021,000 - 74,022,651 (-)Ensembl
RefSeq Acc Id: ENSMUST00000144353
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX74,022,746 - 74,023,508 (-)Ensembl
RefSeq Acc Id: ENSMUST00000145677
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX74,022,618 - 74,023,808 (-)Ensembl
RefSeq Acc Id: ENSMUST00000146210
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX74,022,633 - 74,023,376 (-)Ensembl
RefSeq Acc Id: ENSMUST00000148317   ⟹   ENSMUSP00000122519
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX74,015,358 - 74,018,334 (-)Ensembl
RefSeq Acc Id: ENSMUST00000148706
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX74,014,806 - 74,023,826 (-)Ensembl
RefSeq Acc Id: ENSMUST00000149809
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX74,022,238 - 74,023,727 (-)Ensembl
RefSeq Acc Id: ENSMUST00000149871
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX74,014,806 - 74,023,826 (-)Ensembl
RefSeq Acc Id: NM_001177973   ⟹   NP_001171444
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X73,057,520 - 73,067,527 (-)NCBI
GRCm38X74,013,914 - 74,023,921 (-)ENTREZGENE
MGSCv37X71,259,253 - 71,269,260 (-)RGD
CeleraX65,266,305 - 65,276,311 (-)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001177974   ⟹   NP_001171445
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X73,057,520 - 73,067,527 (-)NCBI
GRCm38X74,013,914 - 74,023,921 (-)ENTREZGENE
MGSCv37X71,259,253 - 71,269,260 (-)RGD
CeleraX65,266,305 - 65,276,311 (-)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001177975   ⟹   NP_001171446
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X73,057,520 - 73,067,524 (-)NCBI
GRCm38X74,013,914 - 74,023,918 (-)NCBI
MGSCv37X71,259,253 - 71,269,260 (-)RGD
CeleraX65,266,305 - 65,276,311 (-)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001177976   ⟹   NP_001171447
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X73,057,520 - 73,067,527 (-)NCBI
GRCm38X74,013,914 - 74,023,921 (-)ENTREZGENE
MGSCv37X71,259,253 - 71,269,260 (-)RGD
CeleraX65,266,305 - 65,276,311 (-)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: NM_008363   ⟹   NP_032389
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X73,057,524 - 73,067,527 (-)NCBI
GRCm38X74,013,918 - 74,023,921 (-)NCBI
MGSCv37X71,259,253 - 71,269,260 (-)RGD
CeleraX65,266,305 - 65,276,311 (-)RGD
cM MapX ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_032389   ⟸   NM_008363
- Peptide Label: isoform 4
- UniProtKB: Q62406 (UniProtKB/Swiss-Prot),   Q540G0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001171445   ⟸   NM_001177974
- Peptide Label: isoform 4
- UniProtKB: Q62406 (UniProtKB/Swiss-Prot),   Q540G0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001171447   ⟸   NM_001177976
- Peptide Label: isoform 2
- UniProtKB: Q62406 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001171444   ⟸   NM_001177973
- Peptide Label: isoform 1
- UniProtKB: B1AUW6 (UniProtKB/TrEMBL),   Q8BR10 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001171446   ⟸   NM_001177975
- Peptide Label: isoform 3
- UniProtKB: Q8BR10 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000116167   ⟸   ENSMUST00000124417
RefSeq Acc Id: ENSMUSP00000117379   ⟸   ENSMUST00000124580
RefSeq Acc Id: ENSMUSP00000121016   ⟸   ENSMUST00000138397
RefSeq Acc Id: ENSMUSP00000064448   ⟸   ENSMUST00000068286
RefSeq Acc Id: ENSMUSP00000115508   ⟸   ENSMUST00000126583
RefSeq Acc Id: ENSMUSP00000117042   ⟸   ENSMUST00000132144
RefSeq Acc Id: ENSMUSP00000033769   ⟸   ENSMUST00000033769
RefSeq Acc Id: ENSMUSP00000099001   ⟸   ENSMUST00000101458
RefSeq Acc Id: ENSMUSP00000122519   ⟸   ENSMUST00000148317
RefSeq Acc Id: ENSMUSP00000109993   ⟸   ENSMUST00000114353
RefSeq Acc Id: ENSMUSP00000109994   ⟸   ENSMUST00000114354
RefSeq Acc Id: ENSMUSP00000109992   ⟸   ENSMUST00000114352
RefSeq Acc Id: ENSMUSP00000110000   ⟸   ENSMUST00000114360
RefSeq Acc Id: ENSMUSP00000118570   ⟸   ENSMUST00000128436
Protein Domains
Death   Protein kinase

Promoters
RGD ID:6845863
Promoter ID:MM_KWN:60765
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   Spleen
Transcripts:OTTMUST00000049599
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X71,263,476 - 71,263,976 (-)MPROMDB
RGD ID:6845865
Promoter ID:MM_KWN:60766
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000049600
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X71,265,521 - 71,266,021 (-)MPROMDB
RGD ID:6845864
Promoter ID:MM_KWN:60767
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000084929
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X71,266,271 - 71,266,771 (-)MPROMDB
RGD ID:6845896
Promoter ID:MM_KWN:60768
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000101458,   ENSMUST00000114334,   ENSMUST00000114339,   ENSMUST00000114344,   ENSMUST00000114347,   ENSMUST00000114353,   NM_008363,   NR_030758,   OTTMUST00000045162,   OTTMUST00000045163,   OTTMUST00000045166,   OTTMUST00000045167,   OTTMUST00000045168,   OTTMUST00000045169,   OTTMUST00000045170,   OTTMUST00000045171,   OTTMUST00000045172,   OTTMUST00000045173,   OTTMUST00000045174,   OTTMUST00000049598,   UC009TNN.1,   UC009TNP.1,   UC009TNQ.1,   UC009TNR.1,   UC009TNS.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X71,268,436 - 71,270,167 (-)MPROMDB
RGD ID:13680766
Promoter ID:EPDNEW_M24531
Type:initiation region
Name:Irak1_1
Description:Mus musculus interleukin-1 receptor-associated kinase 1 , transcriptvariant 5, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X74,023,826 - 74,023,886EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:107420 AgrOrtholog
Ensembl Genes ENSMUSG00000031392 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000033769 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000064448 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000099001 UniProtKB/TrEMBL
  ENSMUSP00000109992 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000109993 UniProtKB/TrEMBL
  ENSMUSP00000109994 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000110000 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000115508 UniProtKB/TrEMBL
  ENSMUSP00000116167 UniProtKB/TrEMBL
  ENSMUSP00000117042 UniProtKB/TrEMBL
  ENSMUSP00000117379 UniProtKB/TrEMBL
  ENSMUSP00000118570 UniProtKB/TrEMBL
  ENSMUSP00000121016 UniProtKB/TrEMBL
  ENSMUSP00000122519 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000033769 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000068286 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000101458 UniProtKB/TrEMBL
  ENSMUST00000114352 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000114353 UniProtKB/TrEMBL
  ENSMUST00000114354 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000114360 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000124417 UniProtKB/TrEMBL
  ENSMUST00000124580 UniProtKB/TrEMBL
  ENSMUST00000126583 UniProtKB/TrEMBL
  ENSMUST00000128436 UniProtKB/TrEMBL
  ENSMUST00000132144 UniProtKB/TrEMBL
  ENSMUST00000138397 UniProtKB/TrEMBL
  ENSMUST00000148317 UniProtKB/TrEMBL
InterPro DEATH-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Death_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Death_IRAK1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IRAK1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ser-Thr/Tyr_kinase_cat_dom UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:16179 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:107420 ENTREZGENE
NCBI Gene 16179 ENTREZGENE
PANTHER PTHR24419:SF1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Death UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pkinase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pkinase_Tyr UniProtKB/TrEMBL
PhenoGen Irak1 PhenoGen
PROSITE PROTEIN_KINASE_ATP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART S_TKc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47986 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF56112 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Mm.38241 ENTREZGENE
UniProt B1AUV9_MOUSE UniProtKB/TrEMBL
  B1AUW1_MOUSE UniProtKB/TrEMBL
  B1AUW6 ENTREZGENE, UniProtKB/TrEMBL
  B1AUW8_MOUSE UniProtKB/TrEMBL
  B1AUW9_MOUSE UniProtKB/TrEMBL
  F6THK7_MOUSE UniProtKB/TrEMBL
  F6TQF4_MOUSE UniProtKB/TrEMBL
  F6ZGQ1_MOUSE UniProtKB/TrEMBL
  F7ANU5_MOUSE UniProtKB/TrEMBL
  F7CUT1_MOUSE UniProtKB/TrEMBL
  IRAK1_MOUSE UniProtKB/Swiss-Prot
  Q540G0 ENTREZGENE, UniProtKB/TrEMBL
  Q62406 ENTREZGENE
  Q8BR10 ENTREZGENE, UniProtKB/TrEMBL
  Q8K4N8_MOUSE UniProtKB/TrEMBL
  Q99J34_MOUSE UniProtKB/TrEMBL
UniProt Secondary B1AUW4 UniProtKB/Swiss-Prot
  Q6Y3Z5 UniProtKB/Swiss-Prot
  Q6Y3Z6 UniProtKB/Swiss-Prot