Ssbp4 (single stranded DNA binding protein 4) - Rat Genome Database
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Gene: Ssbp4 (single stranded DNA binding protein 4) Mus musculus
Analyze
Symbol: Ssbp4
Name: single stranded DNA binding protein 4
RGD ID: 1557483
MGI Page MGI
Description: Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to localize to nucleus. Is expressed in gonad; limb; retina; telencephalon; and trunk somite. Orthologous to human SSBP4 (single stranded DNA binding protein 4); INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 1210002E11Rik; AW743380; single-stranded DNA-binding protein 4; Sspb4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm12470  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39871,050,135 - 71,061,084 (-)NCBIGRCm39mm39
GRCm38870,597,485 - 70,608,387 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl870,597,490 - 70,608,872 (-)EnsemblGRCm38mm10GRCm38
MGSCv37873,121,389 - 73,132,213 (-)NCBIGRCm37mm9NCBIm37
MGSCv36873,526,479 - 73,537,262 (-)NCBImm8
Celera873,153,605 - 73,164,429 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA)

Molecular Function

References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:15226823   PMID:15782199   PMID:16110338   PMID:16141072   PMID:16141073   PMID:17131200  
PMID:18799693   PMID:20059953   PMID:20211142   PMID:21873635   PMID:23341629  


Genomics

Comparative Map Data
Ssbp4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39871,050,135 - 71,061,084 (-)NCBIGRCm39mm39
GRCm38870,597,485 - 70,608,387 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl870,597,490 - 70,608,872 (-)EnsemblGRCm38mm10GRCm38
MGSCv37873,121,389 - 73,132,213 (-)NCBIGRCm37mm9NCBIm37
MGSCv36873,526,479 - 73,537,262 (-)NCBImm8
Celera873,153,605 - 73,164,429 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
SSBP4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1918,418,864 - 18,434,562 (+)EnsemblGRCh38hg38GRCh38
GRCh381918,418,719 - 18,434,562 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371918,529,679 - 18,545,372 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361918,391,136 - 18,406,459 (+)NCBINCBI36hg18NCBI36
Build 341918,391,135 - 18,406,459NCBI
Celera1918,432,041 - 18,447,194 (+)NCBI
Cytogenetic Map19p13.11NCBI
HuRef1918,093,430 - 18,108,673 (+)NCBIHuRef
CHM1_11918,530,390 - 18,545,520 (+)NCBICHM1_1
Ssbp4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01620,578,111 - 20,589,295 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1620,578,131 - 20,589,290 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01620,433,829 - 20,445,004 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41619,334,216 - 19,345,098 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11619,334,213 - 19,345,096 (+)NCBI
Celera1619,019,524 - 19,030,403 (+)NCBICelera
Cytogenetic Map16p14NCBI
Ssbp4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555243,101,906 - 3,109,178 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555243,101,935 - 3,109,178 (-)NCBIChiLan1.0ChiLan1.0
SSBP4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11918,865,443 - 18,883,849 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1918,877,213 - 18,883,849 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01917,897,548 - 17,913,159 (+)NCBIMhudiblu_PPA_v0panPan3
SSBP4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2044,598,920 - 44,613,266 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12044,599,576 - 44,613,344 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Ssbp4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365962,819,551 - 2,833,117 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SSBP4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl259,367,243 - 59,384,541 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1259,367,243 - 59,384,584 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SSBP4
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl616,891,430 - 16,910,030 (+)Ensembl
ChlSab1.1616,891,140 - 16,906,505 (+)NCBI
Ssbp4
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249081,648,150 - 1,658,374 (+)NCBI

Position Markers
RH126908  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38870,597,031 - 70,597,280UniSTSGRCm38
MGSCv37873,120,930 - 73,121,179UniSTSGRCm37
Celera873,153,146 - 73,153,395UniSTS
Cytogenetic Map8B3.3UniSTS
Whitehead/MRC_RH8743.88UniSTS
RH136244  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38870,597,067 - 70,597,267UniSTSGRCm38
MGSCv37873,120,966 - 73,121,166UniSTSGRCm37
Celera873,153,182 - 73,153,382UniSTS
Cytogenetic Map8B3.3UniSTS
RH129421  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38870,597,104 - 70,597,275UniSTSGRCm38
MGSCv37873,121,003 - 73,121,174UniSTSGRCm37
Celera873,153,219 - 73,153,390UniSTS
Cytogenetic Map8B3.3UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558870Eae36_mexperimental allergic encephalomyelitis susceptibility 36 (mouse)Not determined81472316071045600Mouse
1357811Orq3_movulation rate QTL 3 (mouse)Not determined83201654471287993Mouse
4141437W10q14_mweight 10 weeks QTL 14 (mouse)Not determined3201654471287993Mouse
4141172W6q9_mweight 6 weeks QTL 9 (mouse)Not determined3201654471287993Mouse
4140966Egq12_mearly growth QTL 12 (mouse)Not determined3201654471287993Mouse
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
1301544Iba3_minduction of brown adipocytes 3 (mouse)Not determined84429488078295025Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84763703081637146Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84763703081637146Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84773713481737254Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84879293982793021Mouse
14746987Manh64_mmandible shape 64 (mouse)85005330684053306Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85005330684053306Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
10766466Char12_mP. chabaudi malaria resistance QTL 12 (mouse)86826982782600347Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:244
Count of miRNA genes:218
Interacting mature miRNAs:235
Transcripts:ENSMUST00000049908
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001372468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001372469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001372470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001372471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001372472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001372473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001372475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001372476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001372477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001372478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001372479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_133772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_164176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_164177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_164178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006509784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006509790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA271952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC157774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC002150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX214457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX237617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000049908   ⟹   ENSMUSP00000059039
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,597,490 - 70,608,314 (-)Ensembl
RefSeq Acc Id: ENSMUST00000209430
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,597,978 - 70,598,478 (-)Ensembl
RefSeq Acc Id: ENSMUST00000210006
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,599,129 - 70,599,610 (-)Ensembl
RefSeq Acc Id: ENSMUST00000210305
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,597,512 - 70,597,938 (-)Ensembl
RefSeq Acc Id: ENSMUST00000210369   ⟹   ENSMUSP00000147704
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,597,491 - 70,608,872 (-)Ensembl
RefSeq Acc Id: ENSMUST00000210382
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,598,560 - 70,599,697 (-)Ensembl
RefSeq Acc Id: ENSMUST00000210580   ⟹   ENSMUSP00000148255
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,599,557 - 70,608,302 (-)Ensembl
RefSeq Acc Id: ENSMUST00000210699
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,598,768 - 70,599,909 (-)Ensembl
RefSeq Acc Id: ENSMUST00000210756
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,602,312 - 70,608,246 (-)Ensembl
RefSeq Acc Id: ENSMUST00000211134
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,597,493 - 70,608,302 (-)Ensembl
RefSeq Acc Id: ENSMUST00000211153
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,602,157 - 70,608,041 (-)Ensembl
RefSeq Acc Id: ENSMUST00000211197   ⟹   ENSMUSP00000147638
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,599,430 - 70,608,287 (-)Ensembl
RefSeq Acc Id: ENSMUST00000211268
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,600,438 - 70,608,268 (-)Ensembl
RefSeq Acc Id: ENSMUST00000211488
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,597,988 - 70,599,438 (-)Ensembl
RefSeq Acc Id: ENSMUST00000211608   ⟹   ENSMUSP00000147589
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,599,538 - 70,608,312 (-)Ensembl
RefSeq Acc Id: NM_001372468   ⟹   NP_001359397
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,050,140 - 71,060,964 (-)NCBI
GRCm38870,597,490 - 70,608,314 (-)NCBI
RefSeq Acc Id: NM_001372469   ⟹   NP_001359398
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,050,140 - 71,060,964 (-)NCBI
GRCm38870,597,490 - 70,608,314 (-)NCBI
RefSeq Acc Id: NM_001372470   ⟹   NP_001359399
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,050,140 - 71,060,964 (-)NCBI
GRCm38870,597,490 - 70,608,314 (-)NCBI
RefSeq Acc Id: NM_001372471   ⟹   NP_001359400
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,050,140 - 71,060,964 (-)NCBI
GRCm38870,597,490 - 70,608,314 (-)NCBI
RefSeq Acc Id: NM_001372472   ⟹   NP_001359401
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,050,140 - 71,060,964 (-)NCBI
GRCm38870,597,490 - 70,608,314 (-)NCBI
RefSeq Acc Id: NM_001372473   ⟹   NP_001359402
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,050,140 - 71,060,964 (-)NCBI
GRCm38870,597,490 - 70,608,314 (-)NCBI
RefSeq Acc Id: NM_001372475   ⟹   NP_001359404
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,050,140 - 71,060,964 (-)NCBI
GRCm38870,597,490 - 70,608,314 (-)NCBI
RefSeq Acc Id: NM_001372476   ⟹   NP_001359405
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,050,140 - 71,060,964 (-)NCBI
GRCm38870,597,490 - 70,608,314 (-)NCBI
RefSeq Acc Id: NM_001372477   ⟹   NP_001359406
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,050,140 - 71,060,964 (-)NCBI
GRCm38870,597,490 - 70,608,314 (-)NCBI
RefSeq Acc Id: NM_001372478   ⟹   NP_001359407
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,050,140 - 71,060,964 (-)NCBI
GRCm38870,597,490 - 70,608,314 (-)NCBI
RefSeq Acc Id: NM_001372479   ⟹   NP_001359408
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,050,140 - 71,060,964 (-)NCBI
GRCm38870,597,490 - 70,608,314 (-)NCBI
RefSeq Acc Id: NM_133772   ⟹   NP_598533
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,050,140 - 71,060,964 (-)NCBI
GRCm38870,597,490 - 70,608,314 (-)NCBI
MGSCv37873,121,389 - 73,132,213 (-)RGD
Celera873,153,605 - 73,164,429 (-)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_164176
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,050,140 - 71,060,964 (-)NCBI
GRCm38870,597,490 - 70,608,314 (-)NCBI
RefSeq Acc Id: NR_164177
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,050,140 - 71,060,964 (-)NCBI
GRCm38870,597,490 - 70,608,314 (-)NCBI
RefSeq Acc Id: NR_164178
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,050,140 - 71,060,964 (-)NCBI
GRCm38870,597,490 - 70,608,314 (-)NCBI
RefSeq Acc Id: XM_006509784   ⟹   XP_006509847
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,050,135 - 71,061,053 (-)NCBI
GRCm38870,597,485 - 70,608,387 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006509790   ⟹   XP_006509853
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,050,140 - 71,061,053 (-)NCBI
GRCm38870,597,903 - 70,608,387 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011242336   ⟹   XP_011240638
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,050,140 - 71,061,053 (-)NCBI
GRCm38870,597,903 - 70,608,387 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011242337   ⟹   XP_011240639
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,050,135 - 71,061,053 (-)NCBI
GRCm38870,597,490 - 70,608,387 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011242338   ⟹   XP_011240640
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,050,135 - 71,061,053 (-)NCBI
GRCm38870,597,490 - 70,608,387 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030243848   ⟹   XP_030099708
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,050,140 - 71,061,053 (-)NCBI
GRCm38870,597,903 - 70,608,387 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036154372   ⟹   XP_036010265
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,050,140 - 71,061,053 (-)NCBI
RefSeq Acc Id: XM_036154373   ⟹   XP_036010266
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,050,142 - 71,061,084 (-)NCBI
RefSeq Acc Id: XM_036154374   ⟹   XP_036010267
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,050,135 - 71,061,053 (-)NCBI
RefSeq Acc Id: XM_036154375   ⟹   XP_036010268
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,050,140 - 71,061,053 (-)NCBI
RefSeq Acc Id: XM_036154376   ⟹   XP_036010269
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,050,140 - 71,054,966 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001359397 (Get FASTA)   NCBI Sequence Viewer  
  NP_001359398 (Get FASTA)   NCBI Sequence Viewer  
  NP_001359399 (Get FASTA)   NCBI Sequence Viewer  
  NP_001359400 (Get FASTA)   NCBI Sequence Viewer  
  NP_001359401 (Get FASTA)   NCBI Sequence Viewer  
  NP_001359402 (Get FASTA)   NCBI Sequence Viewer  
  NP_001359404 (Get FASTA)   NCBI Sequence Viewer  
  NP_001359405 (Get FASTA)   NCBI Sequence Viewer  
  NP_001359406 (Get FASTA)   NCBI Sequence Viewer  
  NP_001359407 (Get FASTA)   NCBI Sequence Viewer  
  NP_001359408 (Get FASTA)   NCBI Sequence Viewer  
  NP_598533 (Get FASTA)   NCBI Sequence Viewer  
  XP_006509847 (Get FASTA)   NCBI Sequence Viewer  
  XP_006509853 (Get FASTA)   NCBI Sequence Viewer  
  XP_011240638 (Get FASTA)   NCBI Sequence Viewer  
  XP_011240639 (Get FASTA)   NCBI Sequence Viewer  
  XP_011240640 (Get FASTA)   NCBI Sequence Viewer  
  XP_030099708 (Get FASTA)   NCBI Sequence Viewer  
  XP_036010265 (Get FASTA)   NCBI Sequence Viewer  
  XP_036010266 (Get FASTA)   NCBI Sequence Viewer  
  XP_036010267 (Get FASTA)   NCBI Sequence Viewer  
  XP_036010268 (Get FASTA)   NCBI Sequence Viewer  
  XP_036010269 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH02150 (Get FASTA)   NCBI Sequence Viewer  
  BAE32522 (Get FASTA)   NCBI Sequence Viewer  
  EDL28845 (Get FASTA)   NCBI Sequence Viewer  
  EDL28846 (Get FASTA)   NCBI Sequence Viewer  
  EDL28847 (Get FASTA)   NCBI Sequence Viewer  
  EDL28848 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_598533   ⟸   NM_133772
- Peptide Label: isoform 6
- UniProtKB: Q3U4B1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006509853   ⟸   XM_006509790
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006509847   ⟸   XM_006509784
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011240640   ⟸   XM_011242338
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_011240638   ⟸   XM_011242336
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_011240639   ⟸   XM_011242337
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_030099708   ⟸   XM_030243848
- Peptide Label: isoform X7
RefSeq Acc Id: NP_001359407   ⟸   NM_001372478
- Peptide Label: isoform 9
RefSeq Acc Id: NP_001359406   ⟸   NM_001372477
- Peptide Label: isoform 9
RefSeq Acc Id: NP_001359405   ⟸   NM_001372476
- Peptide Label: isoform 8
RefSeq Acc Id: NP_001359408   ⟸   NM_001372479
- Peptide Label: isoform 9
RefSeq Acc Id: NP_001359404   ⟸   NM_001372475
- Peptide Label: isoform 7
RefSeq Acc Id: NP_001359398   ⟸   NM_001372469
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001359401   ⟸   NM_001372472
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001359400   ⟸   NM_001372471
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001359399   ⟸   NM_001372470
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001359397   ⟸   NM_001372468
- Peptide Label: isoform 1
RefSeq Acc Id: NP_001359402   ⟸   NM_001372473
- Peptide Label: isoform 5
RefSeq Acc Id: ENSMUSP00000147589   ⟸   ENSMUST00000211608
RefSeq Acc Id: ENSMUSP00000147638   ⟸   ENSMUST00000211197
RefSeq Acc Id: ENSMUSP00000147704   ⟸   ENSMUST00000210369
RefSeq Acc Id: ENSMUSP00000148255   ⟸   ENSMUST00000210580
RefSeq Acc Id: ENSMUSP00000059039   ⟸   ENSMUST00000049908
RefSeq Acc Id: XP_036010267   ⟸   XM_036154374
- Peptide Label: isoform X5
RefSeq Acc Id: XP_036010268   ⟸   XM_036154375
- Peptide Label: isoform X7
RefSeq Acc Id: XP_036010265   ⟸   XM_036154372
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036010269   ⟸   XM_036154376
- Peptide Label: isoform X8
RefSeq Acc Id: XP_036010266   ⟸   XM_036154373
- Peptide Label: isoform X2
Protein Domains
LisH

Promoters
RGD ID:8667325
Promoter ID:EPDNEW_M11694
Type:initiation region
Name:Ssbp4_1
Description:Mus musculus single stranded DNA binding protein 4 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38870,608,314 - 70,608,374EPDNEW
RGD ID:6848352
Promoter ID:MM_ACW:47843
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Brain,   ES_Cell,   Kidney,   Lung
Transcripts:SSBP4.ISEP07,   SSBP4.KSEP07,   SSBP4.LSEP07,   SSBP4.OSEP07-UNSPLICED,   SSBP4.PSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36873,122,339 - 73,122,839 (-)MPROMDB
RGD ID:6843773
Promoter ID:MM_KWN:54722
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_133772_SSBP4,   UC009MAY.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36873,132,041 - 73,133,732 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1924150 AgrOrtholog
Ensembl Genes ENSMUSG00000070003 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000059039 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000147589 UniProtKB/TrEMBL
  ENSMUSP00000147638 UniProtKB/TrEMBL
  ENSMUSP00000147704 UniProtKB/TrEMBL
  ENSMUSP00000148255 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000049908 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000210369 UniProtKB/TrEMBL
  ENSMUST00000210580 UniProtKB/TrEMBL
  ENSMUST00000211197 UniProtKB/TrEMBL
  ENSMUST00000211608 UniProtKB/TrEMBL
InterPro LisH_dimerisation UniProtKB/TrEMBL
  SSDP_DNA-bd UniProtKB/TrEMBL
MGD MGI:1924150 ENTREZGENE
NCBI Gene 76900 ENTREZGENE
PhenoGen Ssbp4 PhenoGen
PRINTS SSDNABINDING UniProtKB/TrEMBL
PROSITE LISH UniProtKB/TrEMBL
SMART LisH UniProtKB/TrEMBL
UniGene Mm.6667 ENTREZGENE
UniProt A0A1B0GRM9_MOUSE UniProtKB/TrEMBL
  A0A1B0GRS0_MOUSE UniProtKB/TrEMBL
  A0A1B0GRX5_MOUSE UniProtKB/TrEMBL
  A0A1B0GT95_MOUSE UniProtKB/TrEMBL
  Q3U4B1 ENTREZGENE, UniProtKB/TrEMBL
  Q99LZ8_MOUSE UniProtKB/TrEMBL