Zzef1 (zinc finger, ZZ-type with EF hand domain 1) - Rat Genome Database

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Gene: Zzef1 (zinc finger, ZZ-type with EF hand domain 1) Mus musculus
Analyze
Symbol: Zzef1
Name: zinc finger, ZZ-type with EF hand domain 1
RGD ID: 1557479
MGI Page MGI
Description: Predicted to have calcium ion binding activity and zinc ion binding activity. Is expressed in several structures, including adipose tissue; alimentary system; genitourinary system; immune system; and nervous system. Orthologous to human ZZEF1 (zinc finger ZZ-type and EF-hand domain containing 1); INTERACTS WITH 1,2-dimethylhydrazine; clobetasol; ethanol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 8430405D05Rik; BC051585; C130099L13Rik; C85424; KIAA0399-like protein human; MGC107545; mKIAA0399; neuronal superface P antigen; NSPA; zinc finger ZZ-type and EF-hand domain-containing protein 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391172,686,976 - 72,817,946 (+)NCBIGRCm39mm39
GRCm39 Ensembl1172,687,052 - 72,817,946 (+)Ensembl
GRCm381172,796,150 - 72,927,120 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1172,796,226 - 72,927,120 (+)EnsemblGRCm38mm10GRCm38
MGSCv371172,609,728 - 72,740,622 (+)NCBIGRCm37mm9NCBIm37
MGSCv361172,612,234 - 72,743,317 (+)NCBImm8
Celera1180,325,089 - 80,455,772 (+)NCBICelera
Cytogenetic Map11B4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12904583   PMID:16141072   PMID:16141073   PMID:21267068   PMID:21677750   PMID:24194600  
PMID:25709106   PMID:27480124   PMID:27626380   PMID:28700664   PMID:33158444  


Genomics

Comparative Map Data
Zzef1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391172,686,976 - 72,817,946 (+)NCBIGRCm39mm39
GRCm39 Ensembl1172,687,052 - 72,817,946 (+)Ensembl
GRCm381172,796,150 - 72,927,120 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1172,796,226 - 72,927,120 (+)EnsemblGRCm38mm10GRCm38
MGSCv371172,609,728 - 72,740,622 (+)NCBIGRCm37mm9NCBIm37
MGSCv361172,612,234 - 72,743,317 (+)NCBImm8
Celera1180,325,089 - 80,455,772 (+)NCBICelera
Cytogenetic Map11B4NCBI
ZZEF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl174,004,445 - 4,143,030 (-)EnsemblGRCh38hg38GRCh38
GRCh38174,004,445 - 4,143,030 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37173,907,739 - 4,046,324 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36173,854,488 - 3,993,002 (-)NCBINCBI36hg18NCBI36
Build 34173,854,488 - 3,993,063NCBI
Celera173,919,547 - 4,057,833 (-)NCBI
Cytogenetic Map17p13.2NCBI
HuRef173,797,502 - 3,935,822 (-)NCBIHuRef
CHM1_1173,916,492 - 4,055,052 (-)NCBICHM1_1
Zzef1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21057,413,265 - 57,550,888 (+)NCBI
Rnor_6.0 Ensembl1059,360,765 - 59,496,422 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01059,360,939 - 59,498,545 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01059,099,067 - 59,237,547 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41059,683,159 - 59,822,123 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11059,697,043 - 59,833,426 (+)NCBI
Celera1056,538,611 - 56,675,910 (+)NCBICelera
Cytogenetic Map10q24NCBI
Zzef1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546712,760,483 - 12,879,636 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546712,760,334 - 12,882,049 (+)NCBIChiLan1.0ChiLan1.0
ZZEF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1174,052,505 - 4,188,546 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl174,054,952 - 4,188,735 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0174,059,659 - 4,197,386 (-)NCBIMhudiblu_PPA_v0panPan3
ZZEF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1530,134,726 - 30,235,865 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl530,135,759 - 30,235,865 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha530,330,515 - 30,431,700 (-)NCBI
ROS_Cfam_1.0530,235,081 - 30,336,291 (-)NCBI
UMICH_Zoey_3.1530,201,172 - 30,302,329 (-)NCBI
UNSW_CanFamBas_1.0530,159,595 - 30,260,720 (-)NCBI
UU_Cfam_GSD_1.0530,332,873 - 30,434,076 (-)NCBI
Zzef1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560255,171,023 - 55,296,351 (+)NCBI
SpeTri2.0NW_004936677602,105 - 729,940 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZZEF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1250,043,115 - 50,155,354 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11250,041,490 - 50,155,258 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21251,957,468 - 51,997,571 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZZEF1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1163,484,128 - 3,621,465 (-)NCBI
ChlSab1.1 Ensembl163,486,545 - 3,621,040 (-)Ensembl
Zzef1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247866,588,632 - 6,729,747 (-)NCBI

Position Markers
RH127191  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381172,918,545 - 72,918,768UniSTSGRCm38
MGSCv371172,732,047 - 72,732,270UniSTSGRCm37
Celera1180,447,200 - 80,447,423UniSTS
Cytogenetic Map11B4UniSTS
D9Mit34.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map2C1.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11B4UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map1E3UniSTS
Cytogenetic Map5E1UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map16B3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map19D3UniSTS
Cytogenetic Map1H5UniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map9DUniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map17DUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map13A1UniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map12A3UniSTS
Cytogenetic Map1H2.1UniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map7B1UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map5C3.1UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map2C2UniSTS
Cytogenetic Map19CUniSTS
Cytogenetic Map17E1.3UniSTS
Cytogenetic Map5A1UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map13A5UniSTS
Cytogenetic MapXA1.1UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map3A3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map8CUniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map1H1UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map1A2UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map5G1.3UniSTS
Cytogenetic Map7D1-E2UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map1H2.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map15F2UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map1H4-H6UniSTS
Cytogenetic Map12D2UniSTS
Cytogenetic Map1G3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map1H3UniSTS
Cytogenetic Map19BUniSTS
cM Map950.0UniSTS
Whitehead Genetic943.7UniSTS
UniSTS:236631  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38935,213,989 - 35,214,883UniSTSGRCm38
GRCm381172,834,453 - 72,834,845UniSTSGRCm38
MGSCv371172,647,955 - 72,648,347UniSTSGRCm37
MGSCv37935,021,574 - 35,022,468UniSTSGRCm37
Celera1180,363,288 - 80,363,680UniSTS
Celera932,450,712 - 32,451,606UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map11B4UniSTS
GDB:197863  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381172,834,421 - 72,834,570UniSTSGRCm38
GRCm38935,213,957 - 35,214,237UniSTSGRCm38
MGSCv37935,021,542 - 35,021,822UniSTSGRCm37
MGSCv371172,647,923 - 72,648,072UniSTSGRCm37
Celera1180,363,256 - 80,363,405UniSTS
Celera932,450,680 - 32,450,960UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map11B4UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11330000072800000Mouse
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114236579176365904Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114236579176365904Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114473921176963931Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4141000Nidd3_mnon-insulin-dependent diabetes mellitus 3 (mouse)Not determined4515120179151308Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115859972974863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5882844085175703Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116179599488808902Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116226517996265327Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116342858181939647Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116342858194173092Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116493951098939647Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116493951098939647Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116493951098939647Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166842594100842826Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166842594100842826Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66842594100842826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166842594100842826Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166842594100842826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166842594100842826Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116718736579923086Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168300000102000000Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170800372104800540Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170800372104800540Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170800372104800540Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170800372104800540Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172128823106128908Mouse
1301078Alcp2_malcohol preference locus 2 (mouse)Not determined117231897084840636Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172835299106835463Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2790
Count of miRNA genes:716
Interacting mature miRNAs:926
Transcripts:ENSMUST00000069395, ENSMUST00000125122, ENSMUST00000145393, ENSMUST00000150551, ENSMUST00000152063, ENSMUST00000152481, ENSMUST00000172220
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001045536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK018382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK129131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL663082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC037463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC051585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU210938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000069395   ⟹   ENSMUSP00000068790
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1172,796,226 - 72,927,120 (+)Ensembl
RefSeq Acc Id: ENSMUST00000125122
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1172,920,843 - 72,927,120 (+)Ensembl
RefSeq Acc Id: ENSMUST00000145393
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1172,842,994 - 72,850,745 (+)Ensembl
RefSeq Acc Id: ENSMUST00000150551
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1172,796,226 - 72,851,380 (+)Ensembl
RefSeq Acc Id: ENSMUST00000152063
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1172,914,943 - 72,918,896 (+)Ensembl
RefSeq Acc Id: ENSMUST00000152481
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1172,912,296 - 72,925,810 (+)Ensembl
RefSeq Acc Id: ENSMUST00000172220   ⟹   ENSMUSP00000130515
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1172,796,226 - 72,927,120 (+)Ensembl
RefSeq Acc Id: ENSMUST00000207107   ⟹   ENSMUSP00000147028
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1172,796,254 - 72,927,118 (+)Ensembl
RefSeq Acc Id: NM_001045536   ⟹   NP_001039001
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391172,687,052 - 72,817,946 (+)NCBI
GRCm381172,796,226 - 72,927,120 (+)NCBI
MGSCv371172,609,728 - 72,740,622 (+)RGD
Celera1180,325,089 - 80,455,772 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006532601   ⟹   XP_006532664
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391172,686,976 - 72,817,946 (+)NCBI
GRCm381172,796,150 - 72,927,120 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006532602   ⟹   XP_006532665
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391172,686,976 - 72,817,938 (+)NCBI
GRCm381172,796,150 - 72,927,112 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006532603   ⟹   XP_006532666
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391172,763,428 - 72,817,938 (+)NCBI
GRCm381172,872,602 - 72,927,112 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011248827   ⟹   XP_011247129
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391172,758,760 - 72,817,938 (+)NCBI
GRCm381172,867,934 - 72,927,112 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030245704   ⟹   XP_030101564
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391172,755,852 - 72,817,938 (+)NCBI
GRCm381172,869,752 - 72,927,112 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001039001   ⟸   NM_001045536
- UniProtKB: Q5SSH7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006532664   ⟸   XM_006532601
- Peptide Label: isoform X1
- UniProtKB: A0A140LJ04 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006532665   ⟸   XM_006532602
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006532666   ⟸   XM_006532603
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_011247129   ⟸   XM_011248827
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_030101564   ⟸   XM_030245704
- Peptide Label: isoform X5
RefSeq Acc Id: ENSMUSP00000130515   ⟸   ENSMUST00000172220
RefSeq Acc Id: ENSMUSP00000147028   ⟸   ENSMUST00000207107
RefSeq Acc Id: ENSMUSP00000068790   ⟸   ENSMUST00000069395
Protein Domains
DOC   EF-hand   ZZ-type

Promoters
RGD ID:6820685
Promoter ID:MM_KWN:8339
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_001045536,   OTTMUST00000013812,   OTTMUST00000013813,   OTTMUST00000013814,   OTTMUST00000072179
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361172,608,946 - 72,609,727 (-)MPROMDB
RGD ID:6822522
Promoter ID:MM_KWN:8346
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Spleen
Transcripts:OTTMUST00000013817
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361172,729,071 - 72,729,571 (+)MPROMDB
RGD ID:8675462
Promoter ID:EPDNEW_M15760
Type:initiation region
Name:Zzef1_1
Description:Mus musculus zinc finger, ZZ-type with EF hand domain 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381172,796,198 - 72,796,258EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2444286 AgrOrtholog
Ensembl Genes ENSMUSG00000055670 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000068790 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000130515 UniProtKB/TrEMBL
  ENSMUSP00000147028 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000069395 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000172220 UniProtKB/TrEMBL
  ENSMUST00000207107 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.260 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.60.90 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro APC_su10/DOC_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Galactose-bd-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_ZZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_ZZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZZEF1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZZEF1_ZZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:195018 UniProtKB/Swiss-Prot
MGD MGI:2444286 ENTREZGENE
NCBI Gene 195018 ENTREZGENE
PANTHER PTHR22772:SF4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ANAPC10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00569 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Zzef1 PhenoGen
PROSITE DOC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_ZZ_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_ZZ_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART APC10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EFh UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_ZZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49785 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A140LJ04 ENTREZGENE, UniProtKB/TrEMBL
  E9Q5W5_MOUSE UniProtKB/TrEMBL
  Q5SSH7 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q499C8 UniProtKB/Swiss-Prot
  Q6ZQC5 UniProtKB/Swiss-Prot
  Q8C710 UniProtKB/Swiss-Prot
  Q8CI54 UniProtKB/Swiss-Prot