Sertad2 (SERTA domain containing 2) - Rat Genome Database

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Gene: Sertad2 (SERTA domain containing 2) Mus musculus
Analyze
Symbol: Sertad2
Name: SERTA domain containing 2
RGD ID: 1557431
MGI Page MGI
Description: Enables transcription coactivator activity. Acts upstream of or within positive regulation of DNA-templated transcription. Predicted to be located in cytosol and nucleoplasm. Predicted to be active in nucleus. Is expressed in several structures, including 1st branchial arch; early conceptus; genitourinary system; nervous system; and sensory organ. Orthologous to human SERTAD2 (SERTA domain containing 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AB041541; AU021878; Kiaa0127; mKIAA0127; MNCb-1504; PHD zinc finger- and bromodomain-interacting protein 2; Se; SEI; SEI-2; Sei2; SERTA domain-containing protein 2; transcriptional regulator interacting with the PHD-bromodomain 2; Trip; TRIP-Br2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391120,493,166 - 20,603,023 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1120,493,253 - 20,603,021 (+)EnsemblGRCm39 Ensembl
GRCm381120,543,166 - 20,653,023 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1120,543,253 - 20,653,021 (+)EnsemblGRCm38mm10GRCm38
MGSCv371120,443,256 - 20,553,026 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361120,443,256 - 20,553,026 (+)NCBIMGSCv36mm8
Celera1122,690,717 - 22,799,179 (+)NCBICelera
Cytogenetic Map11A3.1NCBI
cM Map1113.03NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (EXP)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (EXP,ISO)
1,2-dimethylhydrazine  (EXP,ISO)
14-Deoxy-11,12-didehydroandrographolide  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,6-dinitrotoluene  (ISO)
2-butoxyethanol  (EXP)
2-methylcholine  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
aflatoxin B1  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
bisphenol A  (ISO)
caffeine  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chrysene  (EXP)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (EXP)
cycloheximide  (ISO)
diarsenic trioxide  (ISO)
dicrotophos  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP)
ethyl methanesulfonate  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
glyphosate  (ISO)
hydralazine  (ISO)
leflunomide  (ISO)
methyl methanesulfonate  (ISO)
ozone  (EXP)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (EXP)
phenylmercury acetate  (ISO)
piroxicam  (ISO)
potassium chromate  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (EXP)
silver atom  (ISO)
silver(0)  (ISO)
tetraphene  (EXP)
thioacetamide  (ISO)
trichloroethene  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)
zinc dichloride  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (ISO)
nucleoplasm  (ISO)
nucleus  (IBA,ISA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Prediction of the coding sequences of mouse homologues of KIAA gene: III. the complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, etal., DNA Res 2003 Aug 31;10(4):167-80.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11331592   PMID:12174196   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15489334  
PMID:15782199   PMID:16098148   PMID:16141072   PMID:16141073   PMID:16602821   PMID:16721052   PMID:17967808   PMID:18287559   PMID:18799693   PMID:19521500   PMID:20059953   PMID:20211142  
PMID:20412781   PMID:21267068   PMID:21873635   PMID:22988430   PMID:23291629   PMID:24211589   PMID:24952961   PMID:27109496   PMID:28067333   PMID:29654510  


Genomics

Comparative Map Data
Sertad2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391120,493,166 - 20,603,023 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1120,493,253 - 20,603,021 (+)EnsemblGRCm39 Ensembl
GRCm381120,543,166 - 20,653,023 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1120,543,253 - 20,653,021 (+)EnsemblGRCm38mm10GRCm38
MGSCv371120,443,256 - 20,553,026 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361120,443,256 - 20,553,026 (+)NCBIMGSCv36mm8
Celera1122,690,717 - 22,799,179 (+)NCBICelera
Cytogenetic Map11A3.1NCBI
cM Map1113.03NCBI
SERTAD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38264,631,621 - 64,653,913 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl264,631,621 - 64,751,005 (-)EnsemblGRCh38hg38GRCh38
GRCh37264,858,755 - 64,881,047 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36264,712,260 - 64,734,550 (-)NCBINCBI36Build 36hg18NCBI36
Build 34264,770,406 - 64,792,697NCBI
Celera264,704,952 - 64,727,240 (-)NCBICelera
Cytogenetic Map2p14NCBI
HuRef264,592,325 - 64,614,547 (-)NCBIHuRef
CHM1_1264,790,087 - 64,812,370 (-)NCBICHM1_1
T2T-CHM13v2.0264,641,067 - 64,663,350 (-)NCBIT2T-CHM13v2.0
Sertad2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81498,935,428 - 99,039,536 (+)NCBIGRCr8
mRatBN7.21494,733,637 - 94,838,200 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1494,733,579 - 94,838,313 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1499,115,319 - 99,180,695 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.014100,355,600 - 100,420,982 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01496,823,151 - 96,888,665 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.014104,786,649 - 104,890,022 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14104,821,215 - 104,886,197 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014104,518,157 - 104,620,782 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414101,372,813 - 101,445,258 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1493,783,742 - 93,849,037 (+)NCBICelera
Cytogenetic Map14q22NCBI
Sertad2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542419,792,634 - 19,793,578 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542419,683,745 - 19,797,889 (+)NCBIChiLan1.0ChiLan1.0
SERTAD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21261,645,728 - 61,768,247 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A61,649,768 - 61,772,197 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A64,698,578 - 64,815,453 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A65,821,440 - 65,940,448 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A65,825,740 - 65,826,684 (-)Ensemblpanpan1.1panPan2
LOC612407
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11064,202,004 - 64,210,579 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1064,089,223 - 64,112,138 (-)NCBIDog10K_Boxer_Tasha
Sertad2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629219,004,128 - 19,114,033 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364919,461,624 - 9,462,568 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364919,457,259 - 9,566,966 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SERTAD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl377,293,508 - 77,317,328 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1377,192,570 - 77,317,327 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2381,032,357 - 81,155,707 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SERTAD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11442,264,679 - 42,386,713 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1442,381,395 - 42,382,339 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604569,492,212 - 69,615,309 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sertad2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247628,863,965 - 8,864,909 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247628,755,451 - 8,869,190 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sertad2
3152 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3234
Count of miRNA genes:745
Interacting mature miRNAs:967
Transcripts:ENSMUST00000093292, ENSMUST00000109585, ENSMUST00000109586, ENSMUST00000145328
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
27226735Metcl16_mmetatarsal-calcaneal length 16, 16 week (mouse)11525000035090827Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
10412216Eae44_mexperimental allergic encephalomyelitis susceptibility 44 (mouse)Not determined111226863739950840Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse
13524844Ppiq9_mprepulse inhibition QTL 9 (mouse)11904999735077325Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1300990Bits3_mbitterness sensitivity 3 (mouse)Not determined11837212142372260Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
1357518Tgyl1_mtriglyceride level 1 (mouse)Not determined11688027733916219Mouse
13463479Mchq19_mmean corpuscular hemoglobin QTL 19 (mouse)111095123244951464Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
10053676Eae44a_mexperimental allergic encephalomyelitis susceptibility 44a (mouse)Not determined11450789621379532Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111928257753282715Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1300768Tshp9_mtooth shape 9 (mouse)Not determined11125976374Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11125976374Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
1302171Pgia28_mproteoglycan induced arthritis 28 (mouse)Not determined11890609742906218Mouse
13463472Mcvq15_mmean corpuscular volume QTL 15 (mouse)111095123244951464Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123880487Mouse
4141047Nilac1_mnicotine induced locomotor activity 1 (mouse)Not determined11901178043011942Mouse

Markers in Region
D11Mit80  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381120,577,139 - 20,577,313UniSTSGRCm38
MGSCv371120,477,142 - 20,477,316UniSTSGRCm37
Celera1122,725,907 - 22,726,081UniSTS
Cytogenetic Map11A3.2UniSTS
cM Map1110.0UniSTS
Whitehead Genetic118.7UniSTS
Whitehead_YAC11 UniSTS
MARC_5393-5394:996690344:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Celera1122,723,484 - 22,723,907UniSTS
Cytogenetic Map11A3.2UniSTS
Cytogenetic Map11A3.1UniSTS
AU021878  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381120,652,809 - 20,652,900UniSTSGRCm38
MGSCv371120,552,812 - 20,552,903UniSTSGRCm37
Celera1122,798,965 - 22,799,056UniSTS
Cytogenetic Map11A3.2UniSTS
Whitehead/MRC_RH11374.26UniSTS
RH141668  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381120,648,708 - 20,648,907UniSTSGRCm38
MGSCv371120,548,711 - 20,548,910UniSTSGRCm37
Celera1122,794,864 - 22,795,063UniSTS
Cytogenetic Map11A3.2UniSTS
px-56c9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8C1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map16C3.1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic Map11A3.2UniSTS
Cytogenetic Map11B1.2UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map12D2UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapYA1UniSTS
cM Map520.0UniSTS
cM Map621.0UniSTS
cM Map1238.0UniSTS
RH12683  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381120,652,188 - 20,652,298UniSTSGRCm38
MGSCv371120,552,191 - 20,552,301UniSTSGRCm37
Celera1122,798,344 - 22,798,454UniSTS
Cytogenetic Map11A3.2UniSTS
D11Hjk16  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381120,612,512 - 20,612,815UniSTSGRCm38
MGSCv371120,512,515 - 20,512,818UniSTSGRCm37
Celera1122,758,560 - 22,758,863UniSTS
Cytogenetic Map11A3.2UniSTS
cM Map1111.0UniSTS
D11Hjk6  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381120,607,184 - 20,607,336UniSTSGRCm38
MGSCv371120,507,187 - 20,507,339UniSTSGRCm37
Celera1122,753,476 - 22,753,628UniSTS
Cytogenetic Map11A3.2UniSTS
cM Map1111.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001038625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_021372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB041541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF366403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK076787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK129059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK142018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK142268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL663115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC008257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC014726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000093292   ⟹   ENSMUSP00000090981
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1120,493,334 - 20,603,021 (+)Ensembl
GRCm38.p6 Ensembl1120,543,334 - 20,653,021 (+)Ensembl
RefSeq Acc Id: ENSMUST00000109585   ⟹   ENSMUSP00000105214
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1120,597,155 - 20,599,065 (+)Ensembl
GRCm38.p6 Ensembl1120,647,155 - 20,649,065 (+)Ensembl
RefSeq Acc Id: ENSMUST00000109586   ⟹   ENSMUSP00000105215
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1120,581,979 - 20,603,021 (+)Ensembl
GRCm38.p6 Ensembl1120,631,979 - 20,653,021 (+)Ensembl
RefSeq Acc Id: ENSMUST00000145328
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1120,493,253 - 20,547,020 (+)Ensembl
GRCm38.p6 Ensembl1120,543,253 - 20,597,020 (+)Ensembl
RefSeq Acc Id: NM_001038625   ⟹   NP_001033714
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391120,581,977 - 20,603,023 (+)NCBI
GRCm381120,631,977 - 20,653,023 (+)NCBI
MGSCv371120,443,256 - 20,553,026 (+)RGD
Celera1122,690,717 - 22,799,179 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001362867   ⟹   NP_001349796
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391120,493,166 - 20,603,023 (+)NCBI
GRCm381120,543,166 - 20,653,023 (+)NCBI
Sequence:
RefSeq Acc Id: NM_021372   ⟹   NP_067347
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391120,493,166 - 20,603,023 (+)NCBI
GRCm381120,543,166 - 20,653,023 (+)NCBI
MGSCv371120,443,256 - 20,553,026 (+)RGD
Celera1122,690,717 - 22,799,179 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006514766   ⟹   XP_006514829
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391120,586,925 - 20,603,021 (+)NCBI
GRCm381120,647,047 - 20,653,021 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156871   ⟹   XP_036012764
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391120,582,913 - 20,603,021 (+)NCBI
Sequence:
RefSeq Acc Id: NP_067347   ⟸   NM_021372
- Peptide Label: isoform 1
- UniProtKB: Q91WL3 (UniProtKB/Swiss-Prot),   Q8C609 (UniProtKB/Swiss-Prot),   Q925E5 (UniProtKB/Swiss-Prot),   Q9JJG5 (UniProtKB/Swiss-Prot),   Q3UGZ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001033714   ⟸   NM_001038625
- Peptide Label: isoform 1
- UniProtKB: Q91WL3 (UniProtKB/Swiss-Prot),   Q8C609 (UniProtKB/Swiss-Prot),   Q925E5 (UniProtKB/Swiss-Prot),   Q9JJG5 (UniProtKB/Swiss-Prot),   Q3UGZ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006514829   ⟸   XM_006514766
- Peptide Label: isoform X1
- UniProtKB: Q91WL3 (UniProtKB/Swiss-Prot),   Q8C609 (UniProtKB/Swiss-Prot),   Q925E5 (UniProtKB/Swiss-Prot),   Q9JJG5 (UniProtKB/Swiss-Prot),   Q3UGZ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001349796   ⟸   NM_001362867
- Peptide Label: isoform 2
RefSeq Acc Id: ENSMUSP00000090981   ⟸   ENSMUST00000093292
RefSeq Acc Id: ENSMUSP00000105215   ⟸   ENSMUST00000109586
RefSeq Acc Id: ENSMUSP00000105214   ⟸   ENSMUST00000109585
RefSeq Acc Id: XP_036012764   ⟸   XM_036156871
- Peptide Label: isoform X1
- UniProtKB: Q9JJG5 (UniProtKB/Swiss-Prot),   Q91WL3 (UniProtKB/Swiss-Prot),   Q8C609 (UniProtKB/Swiss-Prot),   Q925E5 (UniProtKB/Swiss-Prot),   Q3UGZ1 (UniProtKB/TrEMBL)
Protein Domains
SERTA

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JJG5-F1-model_v2 AlphaFold Q9JJG5 1-309 view protein structure

Promoters
RGD ID:6822070
Promoter ID:MM_KWN:6574
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_021372,   OTTMUST00000011665,   UC007IDD.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361120,442,386 - 20,443,437 (+)MPROMDB
RGD ID:6822069
Promoter ID:MM_KWN:6576
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_001038625
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361120,531,571 - 20,532,222 (+)MPROMDB
RGD ID:8674054
Promoter ID:EPDNEW_M15057
Type:multiple initiation site
Name:Sertad2_2
Description:Mus musculus SERTA domain containing 2 , transcript variant 2,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15058  EPDNEW_M15059  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381120,543,256 - 20,543,316EPDNEW
RGD ID:8674056
Promoter ID:EPDNEW_M15058
Type:single initiation site
Name:Sertad2_3
Description:Mus musculus SERTA domain containing 2 , transcript variant 2,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15057  EPDNEW_M15059  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381120,589,304 - 20,589,364EPDNEW
RGD ID:8674058
Promoter ID:EPDNEW_M15059
Type:multiple initiation site
Name:Sertad2_1
Description:Mus musculus SERTA domain containing 2 , transcript variant 2,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15057  EPDNEW_M15058  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381120,631,998 - 20,632,058EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1931026 AgrOrtholog
Ensembl Genes ENSMUSG00000049800 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000093292 ENTREZGENE
  ENSMUST00000093292.11 UniProtKB/Swiss-Prot
  ENSMUST00000109585 ENTREZGENE
  ENSMUST00000109585.2 UniProtKB/Swiss-Prot
  ENSMUST00000109586 ENTREZGENE
  ENSMUST00000109586.3 UniProtKB/Swiss-Prot
InterPro SERTA_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:58172 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1931026 ENTREZGENE
NCBI Gene 58172 ENTREZGENE
PANTHER CELL DIVISION CYCLE ASSOCIATED PROTEIN 4/SERTA DOMAIN-CONTAINING PROTEIN 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SERTA DOMAIN-CONTAINING PROTEIN 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SERTA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Sertad2 PhenoGen
PROSITE SERTA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt Q3UGZ1 ENTREZGENE, UniProtKB/TrEMBL
  Q6ZQI8_MOUSE UniProtKB/TrEMBL
  Q8C609 ENTREZGENE
  Q91VV6_MOUSE UniProtKB/TrEMBL
  Q91WL3 ENTREZGENE
  Q925E5 ENTREZGENE
  Q9JJG5 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q8C609 UniProtKB/Swiss-Prot
  Q91WL3 UniProtKB/Swiss-Prot
  Q925E5 UniProtKB/Swiss-Prot