Ino80b (INO80 complex subunit B) - Rat Genome Database
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Gene: Ino80b (INO80 complex subunit B) Mus musculus
Analyze
Symbol: Ino80b
Name: INO80 complex subunit B
RGD ID: 1557374
MGI Page MGI
Description: Is expressed in Harderian gland; duodenum; metanephros; oviduct; and uterus. Orthologous to human INO80B (INO80 complex subunit B); PARTICIPATES IN INO80 family mediated chromatin remodeling pathway; INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2510009I23Rik; high mobility group AT-hook 1-like 4; HMG1YL; HMG1YL4; Hmga1; Hmga1l4; P; PAP-1 binding protein; PAP-1-associated protein 1; PAPA-1; Papa1; zinc finger HIT domain-containing protein 4; zinc finger, HIT type 4; Znhi; Znhit4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39683,098,746 - 83,102,100 (-)NCBIGRCm39mm39
GRCm39 Ensembl683,098,746 - 83,102,412 (-)Ensembl
GRCm38683,121,765 - 83,125,119 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl683,121,765 - 83,125,431 (-)EnsemblGRCm38mm10GRCm38
MGSCv37683,071,822 - 83,075,023 (-)NCBIGRCm37mm9NCBIm37
MGSCv36683,087,486 - 83,090,687 (-)NCBImm8
Celera685,104,529 - 85,107,730 (-)NCBICelera
Cytogenetic Map6C3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
Ino80 complex  (IBA,ISO)
nucleolus  (ISO)
nucleoplasm  (ISO)
nucleus  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:15489334   PMID:15556297   PMID:15652350   PMID:15782199   PMID:16141072   PMID:16141073  
PMID:19095771   PMID:21873635   PMID:24194600   PMID:27626380  


Genomics

Comparative Map Data
Ino80b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39683,098,746 - 83,102,100 (-)NCBIGRCm39mm39
GRCm39 Ensembl683,098,746 - 83,102,412 (-)Ensembl
GRCm38683,121,765 - 83,125,119 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl683,121,765 - 83,125,431 (-)EnsemblGRCm38mm10GRCm38
MGSCv37683,071,822 - 83,075,023 (-)NCBIGRCm37mm9NCBIm37
MGSCv36683,087,486 - 83,090,687 (-)NCBImm8
Celera685,104,529 - 85,107,730 (-)NCBICelera
Cytogenetic Map6C3NCBI
INO80B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl274,455,087 - 74,457,944 (+)EnsemblGRCh38hg38GRCh38
GRCh38274,455,087 - 74,457,944 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37274,682,214 - 74,685,071 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36274,535,707 - 74,538,595 (+)NCBINCBI36hg18NCBI36
Build 34274,593,902 - 74,596,726NCBI
Celera274,513,388 - 74,516,276 (+)NCBI
Cytogenetic Map2p13.1NCBI
HuRef274,418,445 - 74,421,382 (+)NCBIHuRef
CHM1_1274,611,567 - 74,614,504 (+)NCBICHM1_1
Ino80b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24115,627,907 - 115,631,069 (-)NCBI
Rnor_6.0 Ensembl4113,954,613 - 113,957,774 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04113,954,612 - 113,957,774 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04178,639,683 - 178,642,845 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44117,333,893 - 117,337,055 (-)NCBIRGSC3.4rn4RGSC3.4
Celera4104,622,106 - 104,625,268 (-)NCBICelera
Cytogenetic Map4q34NCBI
Ino80b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542411,324,741 - 11,327,466 (-)NCBIChiLan1.0ChiLan1.0
INO80B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A76,027,621 - 76,030,549 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v02A74,521,624 - 74,524,578 (+)NCBIMhudiblu_PPA_v0panPan3
INO80B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11748,674,004 - 48,676,869 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Ino80b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936556678,073 - 681,157 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
INO80B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1368,585,038 - 68,588,321 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2371,833,986 - 71,837,274 (+)NCBISscrofa10.2Sscrofa10.2susScr3
INO80B
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11432,819,491 - 32,822,519 (-)NCBI
Ino80b
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474929,048,492 - 29,051,459 (-)NCBI

Position Markers
D6UmiJ27  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38683,123,686 - 83,123,850UniSTSGRCm38
MGSCv37683,073,680 - 83,073,844UniSTSGRCm37
Celera685,106,387 - 85,106,551UniSTS
Cytogenetic Map6D1UniSTS
cM Map634.76UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487426034Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64531405987426034Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1301254Skts11_mskin tumor susceptibility 11 (mouse)Not determined65117915085179300Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5437342788379171Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
4141990Etax6_methanol induced ataxia 6 (mouse)Not determined7132262186275719Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
1301571Arrd1_mage-related retinal degeneration 1 (mouse)Not determined67554435692607450Mouse
1300674Nidd3n_mnon-insulin-dependent diabetes mellitus 3 in NSY (mouse)Not determined67554435694225955Mouse
10412195Efw_mepididymal fat weight (mouse)Not determined67554435694225955Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
14697704Stsl4_mSalmonella typhimurium susceptibility locus 4 (mouse)67710000090000000Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67800000097000000Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681500000102200000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:917
Count of miRNA genes:452
Interacting mature miRNAs:505
Transcripts:ENSMUST00000032109, ENSMUST00000113935, ENSMUST00000143814
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000032109   ⟹   ENSMUSP00000032109
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl683,121,828 - 83,125,029 (-)Ensembl
RefSeq Acc Id: ENSMUST00000113935   ⟹   ENSMUSP00000109568
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl683,121,765 - 83,125,431 (-)Ensembl
RefSeq Acc Id: ENSMUST00000143814   ⟹   ENSMUSP00000117556
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl683,121,765 - 83,125,431 (-)Ensembl
RefSeq Acc Id: ENSMUST00000203085
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl683,124,413 - 83,124,868 (-)Ensembl
RefSeq Acc Id: NM_023547   ⟹   NP_076036
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,098,746 - 83,102,100 (-)NCBI
GRCm38683,121,765 - 83,125,119 (-)NCBI
MGSCv37683,071,822 - 83,075,023 (-)RGD
Celera685,104,529 - 85,107,730 (-)RGD
cM Map6 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_076036   ⟸   NM_023547
- Sequence:
RefSeq Acc Id: ENSMUSP00000032109   ⟸   ENSMUST00000032109
RefSeq Acc Id: ENSMUSP00000117556   ⟸   ENSMUST00000143814
RefSeq Acc Id: ENSMUSP00000109568   ⟸   ENSMUST00000113935
Protein Domains
PAPA-1

Promoters
RGD ID:6839494
Promoter ID:MM_KWN:46579
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000113935,   OTTMUST00000059422
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36683,074,856 - 83,075,356 (-)MPROMDB
RGD ID:6890136
Promoter ID:EPDNEW_M8519
Type:initiation region
Name:Ino80b_1
Description:Mus musculus INO80 complex subunit B , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38683,125,092 - 83,125,152EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1917270 AgrOrtholog
Ensembl Genes ENSMUSG00000030034 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000032109 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000109568 UniProtKB/TrEMBL
  ENSMUSP00000117556 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000032109 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000113935 UniProtKB/TrEMBL
  ENSMUST00000143814 UniProtKB/TrEMBL
InterPro INO80B/Ies2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  INO80B_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_HIT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:70020 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1917270 ENTREZGENE
NCBI Gene 70020 ENTREZGENE
PANTHER PTHR21561 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PAPA-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-HIT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ino80b PhenoGen
SMART PAPA-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0R4J0C7_MOUSE UniProtKB/TrEMBL
  A0A6Q6QAE5_MOUSE UniProtKB/TrEMBL
  D6RES5_MOUSE UniProtKB/TrEMBL
  IN80B_MOUSE UniProtKB/Swiss-Prot
  Q80ZV5_MOUSE UniProtKB/TrEMBL
  Q99PT3 ENTREZGENE
UniProt Secondary Q9CY38 UniProtKB/Swiss-Prot