Shd (src homology 2 domain-containing transforming protein D) - Rat Genome Database

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Gene: Shd (src homology 2 domain-containing transforming protein D) Mus musculus
Analyze
Symbol: Shd
Name: src homology 2 domain-containing transforming protein D
RGD ID: 1557201
MGI Page MGI
Description: Predicted to enable phosphotyrosine residue binding activity. Orthologous to human SHD (Src homology 2 domain containing transforming protein D).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI413439; MGC118480; SH2 domain-containing adapter protein D
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391756,276,828 - 56,283,624 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1756,277,467 - 56,283,625 (+)EnsemblGRCm39 Ensembl
GRCm381755,969,828 - 55,976,620 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1755,970,467 - 55,976,625 (+)EnsemblGRCm38mm10GRCm38
MGSCv371756,109,905 - 56,116,043 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361755,563,776 - 55,569,910 (+)NCBIMGSCv36mm8
Celera1759,389,009 - 59,395,147 (+)NCBICelera
Cytogenetic Map17DNCBI
cM Map1729.09NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:9315092   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:15489334   PMID:16141072   PMID:16141073   PMID:16602821  
PMID:21267068   PMID:21873635   PMID:31422919   PMID:35013307  


Genomics

Comparative Map Data
Shd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391756,276,828 - 56,283,624 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1756,277,467 - 56,283,625 (+)EnsemblGRCm39 Ensembl
GRCm381755,969,828 - 55,976,620 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1755,970,467 - 55,976,625 (+)EnsemblGRCm38mm10GRCm38
MGSCv371756,109,905 - 56,116,043 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361755,563,776 - 55,569,910 (+)NCBIMGSCv36mm8
Celera1759,389,009 - 59,395,147 (+)NCBICelera
Cytogenetic Map17DNCBI
cM Map1729.09NCBI
SHD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38194,279,069 - 4,290,722 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl194,279,266 - 4,290,722 (+)EnsemblGRCh38hg38GRCh38
GRCh37194,279,066 - 4,290,719 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36194,230,659 - 4,241,720 (+)NCBINCBI36Build 36hg18NCBI36
Celera194,217,984 - 4,230,101 (+)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef194,041,763 - 4,053,879 (+)NCBIHuRef
CHM1_1194,278,213 - 4,290,327 (+)NCBICHM1_1
T2T-CHM13v2.0194,262,345 - 4,273,993 (+)NCBIT2T-CHM13v2.0
Shd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89888,865 - 895,557 (+)NCBIGRCr8
mRatBN7.29799,652 - 809,769 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl9795,674 - 808,371 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx91,248,790 - 1,255,476 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.096,595,976 - 6,602,670 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.095,553,828 - 5,560,514 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0911,090,048 - 11,098,813 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl911,089,106 - 11,096,704 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0910,075,316 - 10,083,990 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera97,698,081 - 7,704,778 (-)NCBICelera
Cytogenetic Map9q11NCBI
Shd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554954,577,178 - 4,586,955 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554954,579,252 - 4,587,192 (-)NCBIChiLan1.0ChiLan1.0
SHD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2208,676,614 - 8,687,690 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1197,906,663 - 7,917,916 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0193,301,944 - 3,313,769 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1194,250,630 - 4,261,038 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl194,250,630 - 4,261,038 (+)Ensemblpanpan1.1panPan2
SHD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12055,356,407 - 55,361,675 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2055,356,169 - 55,361,681 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2055,084,340 - 55,089,970 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02056,015,524 - 56,021,165 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2056,015,513 - 56,020,937 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12055,075,479 - 55,081,100 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02055,556,686 - 55,562,330 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02055,755,327 - 55,760,970 (-)NCBIUU_Cfam_GSD_1.0
Shd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118215,380,272 - 215,388,721 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365882,447,947 - 2,454,591 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365882,447,133 - 2,454,511 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SHD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl274,497,351 - 74,504,659 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1274,496,771 - 74,506,855 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2274,990,300 - 74,997,236 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SHD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.164,021,013 - 4,030,904 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl64,022,494 - 4,030,812 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660814,182,012 - 4,193,091 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Shd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248285,368,029 - 5,375,702 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248285,368,153 - 5,376,086 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Shd
216 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:131
Count of miRNA genes:123
Interacting mature miRNAs:128
Transcripts:ENSMUST00000044216
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172461275058612864Mouse
10412204Bbaa29_mB.burgdorferi-associated arthritis 29 (mouse)Not determined172605118560051352Mouse
1302005Loco2_mlocomotor activity 2 (mouse)Not determined172688497260885114Mouse
15039348Nmrs37_mNAFLD-associated magnetic resonance shift 37 (mouse)172781520961815209Mouse
1300703Uvbi2_mUVB induced immunosuppression 2 (mouse)Not determined172862240662622654Mouse
1300589Myaa2_mmodifier of Yaa 2 (mouse)Not determined173013255564132666Mouse
4140955Plgr1_mplague resistance locus 1 (mouse)Not determined3103350065033630Mouse
1300885Mbis4_mMycobacterium bovis-induced systemic lupus erythematosus 4 (mouse)Not determined173517581770165926Mouse
10755514Amzn2_manatomical modifier of Zfp423 2 (mouse)173596629469966424Mouse
12904951Smmq2_msoleus muscle mass QTL 2 (mouse)173678974370789743Mouse
1300592Pcyts5_mplasmacytoma susceptibility 5 (mouse)Not determined173871288772712970Mouse
10755525Lymph2_mlymphocyte differential 2 (mouse)173880562672805626Mouse
10755534Lymph4_mlymphocyte differential 4 (mouse)173880562672805626Mouse
4141319Hmtb8_mhemostasis and thrombosis rebleeding time 8 (mouse)Not determined4053444774534623Mouse
15039324Nmrs48_mNAFLD-associated magnetic resonance shift 48 (mouse)174093918774939187Mouse
26884390Skwq9_mskull length QTL 9, 10 week (mouse)174371089167806995Mouse
26884428Cvht3_mcranial vault height 3, 5 week (mouse)174651092682407429Mouse
14700692Cihvtq1_mcoxsackieviral infection heart viral titre QTL 1 (mouse)175000702870006995Mouse
1357754Ahl3_mage related hearing loss 3 (mouse)Not determined175020395784204103Mouse
4142243Lfnq5_mlung function QTL 5 (mouse)Not determined5173897957534623Mouse
4141879Chlq9_mcirculating hormone level QTL 9 (mouse)Not determined175175842585758612Mouse
1357532Bmch7_mbone mechanical trait 7 (mouse)Not determined175175842585758612Mouse

Markers in Region
AI413439  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381755,976,319 - 55,976,437UniSTSGRCm38
MGSCv371756,115,742 - 56,115,860UniSTSGRCm37
Celera1759,394,846 - 59,394,964UniSTS
Cytogenetic Map17DUniSTS
Whitehead/MRC_RH17722.31UniSTS
AB018423  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381755,976,428 - 55,976,561UniSTSGRCm38
MGSCv371756,115,851 - 56,115,984UniSTSGRCm37
Celera1759,394,955 - 59,395,088UniSTS
Cytogenetic Map17DUniSTS
Whitehead/MRC_RH17718.68UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001159523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_177106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011246334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB018423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC154235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK142491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW493186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC052026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC079574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC103798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT009719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000044216   ⟹   ENSMUSP00000047656
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1756,277,467 - 56,283,617 (+)Ensembl
GRCm38.p6 Ensembl1755,970,467 - 55,976,617 (+)Ensembl
RefSeq Acc Id: ENSMUST00000223629   ⟹   ENSMUSP00000153605
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1756,277,589 - 56,283,620 (+)Ensembl
GRCm38.p6 Ensembl1755,970,589 - 55,976,620 (+)Ensembl
RefSeq Acc Id: ENSMUST00000223687
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1756,280,058 - 56,281,820 (+)Ensembl
GRCm38.p6 Ensembl1755,973,058 - 55,974,820 (+)Ensembl
RefSeq Acc Id: ENSMUST00000223841
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1756,283,090 - 56,283,625 (+)Ensembl
GRCm38.p6 Ensembl1755,976,090 - 55,976,625 (+)Ensembl
RefSeq Acc Id: ENSMUST00000224021
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1756,277,541 - 56,279,921 (+)Ensembl
GRCm38.p6 Ensembl1755,970,541 - 55,972,921 (+)Ensembl
RefSeq Acc Id: ENSMUST00000225145   ⟹   ENSMUSP00000153663
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1756,277,488 - 56,279,156 (+)Ensembl
GRCm38.p6 Ensembl1755,970,488 - 55,972,156 (+)Ensembl
RefSeq Acc Id: ENSMUST00000233858
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1756,278,434 - 56,279,930 (+)Ensembl
GRCm38.p6 Ensembl1755,971,434 - 55,972,930 (+)Ensembl
RefSeq Acc Id: NM_001159523   ⟹   NP_001152995
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391756,277,477 - 56,283,620 (+)NCBI
GRCm381755,970,482 - 55,976,620 (+)NCBI
MGSCv371756,109,905 - 56,116,043 (+)RGD
Celera1759,389,009 - 59,395,147 (+)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001410665   ⟹   NP_001397594
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391756,277,792 - 56,283,620 (+)NCBI
RefSeq Acc Id: NM_001410666   ⟹   NP_001397595
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391756,277,477 - 56,283,620 (+)NCBI
RefSeq Acc Id: NM_001410667   ⟹   NP_001397596
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391756,277,477 - 56,283,620 (+)NCBI
RefSeq Acc Id: NM_001410668   ⟹   NP_001397597
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391756,277,477 - 56,283,620 (+)NCBI
RefSeq Acc Id: NM_001410669   ⟹   NP_001397598
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391756,277,477 - 56,283,620 (+)NCBI
RefSeq Acc Id: NM_001410670   ⟹   NP_001397599
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391756,277,477 - 56,283,620 (+)NCBI
RefSeq Acc Id: NM_001410671   ⟹   NP_001397600
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391756,277,477 - 56,283,620 (+)NCBI
RefSeq Acc Id: NM_001410672   ⟹   NP_001397601
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391756,277,477 - 56,283,620 (+)NCBI
RefSeq Acc Id: NM_001410673   ⟹   NP_001397602
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391756,277,477 - 56,283,620 (+)NCBI
RefSeq Acc Id: NM_009168   ⟹   NP_033194
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391756,277,477 - 56,283,620 (+)NCBI
GRCm381755,970,482 - 55,976,620 (+)NCBI
MGSCv371756,109,905 - 56,116,043 (+)RGD
Celera1759,389,009 - 59,395,147 (+)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_177106
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391756,277,477 - 56,283,620 (+)NCBI
RefSeq Acc Id: XM_011246334   ⟹   XP_011244636
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391756,276,838 - 56,283,624 (+)NCBI
GRCm381755,969,838 - 55,976,620 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249612   ⟹   XP_030105472
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391756,276,828 - 56,283,620 (+)NCBI
GRCm381755,969,828 - 55,976,620 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_033194   ⟸   NM_009168
- Peptide Label: isoform 2
- UniProtKB: Q3SYI7 (UniProtKB/Swiss-Prot),   O88834 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001152995   ⟸   NM_001159523
- Peptide Label: isoform 1
- UniProtKB: O88834 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011244636   ⟸   XM_011246334
- Peptide Label: isoform X1
- UniProtKB: O88834 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030105472   ⟸   XM_030249612
- Peptide Label: isoform X2
- UniProtKB: O88834 (UniProtKB/Swiss-Prot),   Q3SYI7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000153605   ⟸   ENSMUST00000223629
RefSeq Acc Id: ENSMUSP00000153663   ⟸   ENSMUST00000225145
RefSeq Acc Id: ENSMUSP00000047656   ⟸   ENSMUST00000044216
RefSeq Acc Id: NP_001397602   ⟸   NM_001410673
- Peptide Label: isoform 6
RefSeq Acc Id: NP_001397601   ⟸   NM_001410672
- Peptide Label: isoform 6
RefSeq Acc Id: NP_001397600   ⟸   NM_001410671
- Peptide Label: isoform 6
RefSeq Acc Id: NP_001397599   ⟸   NM_001410670
- Peptide Label: isoform 6
RefSeq Acc Id: NP_001397598   ⟸   NM_001410669
- Peptide Label: isoform 6
RefSeq Acc Id: NP_001397595   ⟸   NM_001410666
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001397596   ⟸   NM_001410667
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001397597   ⟸   NM_001410668
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001397594   ⟸   NM_001410665
- Peptide Label: isoform 1
Protein Domains
SH2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O88834-F1-model_v2 AlphaFold O88834 1-343 view protein structure

Promoters
RGD ID:13676462
Promoter ID:EPDNEW_M22379
Type:initiation region
Name:Shd_1
Description:Mus musculus src homology 2 domain-containing transforming proteinD , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381755,970,506 - 55,970,566EPDNEW
RGD ID:6828675
Promoter ID:MM_KWN:23850
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung
Transcripts:ENSMUST00000044216,   NM_009168
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361756,109,061 - 56,109,857 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1099461 AgrOrtholog
Ensembl Genes ENSMUSG00000039154 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000044216 ENTREZGENE
  ENSMUST00000044216.8 UniProtKB/Swiss-Prot
  ENSMUST00000223629 ENTREZGENE
  ENSMUST00000223629.2 UniProtKB/Swiss-Prot
  ENSMUST00000225145.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.505.10 UniProtKB/Swiss-Prot
InterPro SH2 UniProtKB/Swiss-Prot
  SH2_dom_sf UniProtKB/Swiss-Prot
  SHD_SH2 UniProtKB/Swiss-Prot
KEGG Report mmu:20420 UniProtKB/Swiss-Prot
MGD MGI:1099461 ENTREZGENE
NCBI Gene 20420 ENTREZGENE
PANTHER HEAVYWEIGHT, ISOFORM A UniProtKB/Swiss-Prot
  PTHR15127:SF33 UniProtKB/Swiss-Prot
Pfam SH2 UniProtKB/Swiss-Prot
PhenoGen Shd PhenoGen
PRINTS SH2DOMAIN UniProtKB/Swiss-Prot
PROSITE SH2 UniProtKB/Swiss-Prot
SMART SH2 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF55550 UniProtKB/Swiss-Prot
UniProt A0A286YE05_MOUSE UniProtKB/TrEMBL
  O88834 ENTREZGENE
  Q3SYI7 ENTREZGENE
  SHD_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q3SYI7 UniProtKB/Swiss-Prot