Bsx (brain specific homeobox) - Rat Genome Database

Name: Bsx
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Bsx (brain specific homeobox) Mus musculus

Analyze

Symbol:

Bsx

Name:

brain specific homeobox

RGD ID:

1557168

MGI Page

MGI

Description:

Exhibits DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in several processes, including eating behavior; mammary gland involution; and positive regulation of transcription by RNA polymerase II. Localizes to cytoplasm; nucleus; and transcription regulator complex. Is expressed in brain; metanephros; and renal vasculature. Orthologous to human BSX (brain specific homeobox); INTERACTS WITH 1,2-dichloroethane; 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

brain-specific homeobox protein homolog; Bsx1; Bsx1a; Bsx1b; MGC129478; MGC129479

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	BSX (brain specific homeobox)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Bsx (brain specific homeobox)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Bsx (brain specific homeobox)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	BSX (brain specific homeobox)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	BSX (brain specific homeobox)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Bsx (brain specific homeobox)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	BSX (brain specific homeobox)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	BSX (brain specific homeobox)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Bsx (brain specific homeobox)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Bsx (brain specific homeobox)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Homo sapiens (human):	BSX (brain specific homeobox)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Danio rerio (zebrafish):	bsx (brain-specific homeobox)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup)
Drosophila melanogaster (fruit fly):	bsh	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER\|Roundup\|TreeFam)
Caenorhabditis elegans (roundworm):	tab-1	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER\|Roundup\|TreeFam)

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	40,782,994 - 40,790,258 (+)	NCBI	GRCm39		mm39
GRCm38	9	40,874,127 - 40,878,962 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	40,874,127 - 40,880,057 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	40,682,210 - 40,686,055 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	9	40,625,196 - 40,629,041 (+)	NCBI			mm8
Celera	9	38,108,339 - 38,112,231 (+)	NCBI		Celera
Cytogenetic Map	9	A5.1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Dwarfism (ISO)

schizophrenia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,4-methylenedioxymethamphetamine (EXP)

aflatoxin B1 (ISO)

benzo[a]pyrene (ISO)

bisphenol A (ISO)

cyclosporin A (ISO)

lead diacetate (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

eating behavior (IMP)

locomotory behavior (IMP)

mammary gland involution (IMP)

positive regulation of transcription by RNA polymerase II (IDA,IGI)

regulation of transcription by RNA polymerase II (IBA)

regulation of transcription, DNA-templated (IEA)

Cellular Component

cytoplasm (IDA)

nucleus (IDA)

transcription regulator complex (IDA)

Molecular Function

DNA binding (IEA)

DNA-binding transcription activator activity, RNA polymerase II-specific (IDA)

DNA-binding transcription factor activity (IDA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

protein binding (IPI)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA,IDA)

sequence-specific DNA binding (IDA)

sequence-specific double-stranded DNA binding (ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal circadian temperature homeostasis (IAGP)

abnormal food intake (IAGP)

abnormal involution of the mammary gland (IAGP)

abnormal mammary gland growth during lactation (IAGP)

decreased body size (IAGP)

decreased body weight (IAGP)

decreased core body temperature (IAGP)

decreased respiratory quotient (IAGP)

hyperglycemia (IAGP)

hypoactivity (IAGP)

increased circulating insulin level (IAGP)

increased lean body mass (IAGP)

increased mammary gland apoptosis (IAGP)

increased percent body fat/body weight (IAGP)

lactation failure (IAGP)

maternal effect (IAGP)

no abnormal phenotype detected (IAGP)

polyphagia (IAGP)

reduced female fertility (IAGP)

References

References - curated


1.	Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2.	MGD data from the GO Consortium
3.	RGD automated import pipeline
4.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:14678827	PMID:16602821	PMID:17353277	PMID:17485440	PMID:17550780	PMID:17944879	PMID:18287559	PMID:21267068	PMID:21677750	PMID:21873635	PMID:23276958
PMID:23671185	PMID:24952961	PMID:25864637	PMID:27133129	PMID:27209204	PMID:27578785	PMID:29795232	PMID:30063881

Genomics

Comparative Map Data

Bsx
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	40,782,994 - 40,790,258 (+)	NCBI	GRCm39		mm39
GRCm38	9	40,874,127 - 40,878,962 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	40,874,127 - 40,880,057 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	40,682,210 - 40,686,055 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	9	40,625,196 - 40,629,041 (+)	NCBI			mm8
Celera	9	38,108,339 - 38,112,231 (+)	NCBI		Celera
Cytogenetic Map	9	A5.1	NCBI

BSX
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	11	122,977,570 - 122,981,834 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	11	122,977,570 - 122,981,834 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	11	122,848,357 - 122,852,379 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	122,353,567 - 122,357,589 (-)	NCBI	NCBI36		hg18	NCBI36
Celera	11	120,007,843 - 120,011,864 (-)	NCBI
Cytogenetic Map	11	q24.1	NCBI
HuRef	11	118,791,194 - 118,795,215 (-)	NCBI		HuRef
CHM1_1	11	122,734,114 - 122,738,138 (-)	NCBI		CHM1_1

Bsx
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	8	45,061,670 - 45,065,430 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	45,061,670 - 45,065,430 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	43,548,484 - 43,552,239 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	43,855,822 - 43,860,107 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	8	40,853,382 - 40,857,138 (+)	NCBI		Celera
Cytogenetic Map	8	q22	NCBI

Bsx
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955412	23,797,630 - 23,801,479 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955412	23,796,973 - 23,801,479 (-)	NCBI	ChiLan1.0	ChiLan1.0

BSX
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	11	121,731,049 - 121,735,101 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	121,731,049 - 121,735,101 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	11	117,807,856 - 117,815,571 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

BSX
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	5	11,365,805 - 11,369,575 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	5	11,365,635 - 11,369,575 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Bsx
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936542	7,511,760 - 7,515,477 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BSX
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	49,905,428 - 49,909,226 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	49,873,031 - 49,910,581 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	55,249,305 - 55,254,781 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

BSX
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	114,366,225 - 114,373,943 (-)	NCBI
ChlSab1.1 Ensembl	1	114,368,217 - 114,372,282 (-)	Ensembl

Bsx
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624880	2,128,744 - 2,137,465 (+)	NCBI

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
13504833	Bglu19_m	blood glucose level 19 (mouse)					9	9999472	43999472	Mouse
1300532	Tbs2_m	tuberculosis severity 2 (mouse)			Not determined		9	12458674	46458818	Mouse
10043917	Obq37_m	obesity QTL 37 (mouse)			Not determined		9	13479879	47479879	Mouse
1357637	Si5lq2_m	serum IGFBP-5 level QTL 2 (mouse)			Not determined		9	15500455	49500594	Mouse
4141447	Cfmq2_m	cystic fibrosis modifier QTL 2 (mouse)			Not determined		9	15500455	49500594	Mouse
4141591	Cq4_m	cholesterol QTL 4 (mouse)			Not determined		9	15500455	49500594	Mouse
1301421	Lgth4_m	body length 4 (mouse)			Not determined		9	15500455	49500594	Mouse
11354951	Pdcc3_m	plasmacytoid dentritic cell compartment 3 (mouse)					9	15838331	49838331	Mouse
12790993	Adq1_m	aortic diameter QTL 1 (mouse)					9	15838331	49838331	Mouse
12790997	Adq2_m	aortic diameter QTL 2 (mouse)					9	15838331	49838331	Mouse
12880415	V125Dq7_m	vitamin D active form serum level QTL 7 (mouse)					9	16100000	50100000	Mouse
12880416	V125Dq8_m	vitamin D active form serum level QTL 8 (mouse)					9	16100000	50100000	Mouse
13504834	Hdlq109_m	HDL QTL 109 (mouse)					9	16798345	50798345	Mouse
1357465	Vtbt6_m	vertebral trabecular bone trait 6 (mouse)			Not determined		9	17067544	51067647	Mouse
1300643	Pvcan2_m	protection against vaginal candidiasis 2 (mouse)			Not determined		9	20032110	54032229	Mouse
1301439	Morph2_m	morphine antinociception 2 (mouse)			Not determined		9	20242066	54242196	Mouse
1301045	Sluc10_m	susceptibility to lung cancer 10 (mouse)			Not determined		9	20394901	54395074	Mouse
1301883	Skull12_m	skull morphology 12 (mouse)			Not determined		9	20394901	54395074	Mouse
4142352	Lmr17_m	leishmaniasis resistance 17 (mouse)			Not determined		9	20394901	54395074	Mouse
10043950	Pbft5_m	percent body fat 5 (mouse)			Not determined		9	20394901	54395074	Mouse
12904939	Edlmmq8_m	extensor digitorum longus muscle mass QTL 8 (mouse)					9	20941444	54941444	Mouse
13208563	Bmiq8_m	body mass index QTL 8 (mouse)					9	25000000	69000000	Mouse
11532694	Sluc39a_m	susceptibility to lung cancer 39a (mouse)					9	25676189	59676285	Mouse
11532695	Sluc39b_m	susceptibility to lung cancer 39b (mouse)					9	25676189	59676285	Mouse
11532696	Sluc39c_m	susceptibility to lung cancer 39c (mouse)					9	25676189	59676285	Mouse
11532712	Sluc39d_m	susceptibility to lung cancer 39d (mouse)					9	25676189	59676285	Mouse
1300932	Hdlq17_m	HDL QTL 17 (mouse)			Not determined		9	26885124	60885255	Mouse
10043867	Mtbcq9_m	multiple trait body composition QTL 9 (mouse)			Not determined		9	26885124	60885255	Mouse
10043987	Stheal13_m	soft tissue heal 13 (mouse)			Not determined		9	26885124	60885255	Mouse
10043878	Adip20_m	adiposity 20 (mouse)			Not determined		9	27339897	61340026	Mouse
1301000	Obq5_m	obesity QTL 5 (mouse)			Not determined		9	28592037	41888030	Mouse
10043847	Hdlq89_m	HDL QTL 89 (mouse)			Not determined		9	29381631	63381774	Mouse
1301782	Chol11_m	cholesterol 11 (mouse)			Not determined		9	29381631	63381774	Mouse
1301365	Ap5q_m	alcohol preference 5 QTL (mouse)			Not determined		9	30141866	64141979	Mouse
1357746	Vtbt7_m	vertebral trabecular bone trait 7 (mouse)			Not determined		9	30828617	64828723	Mouse
1302180	Actd4_m	activity-distance traveled 4 (mouse)			Not determined		9	32523263	66523557	Mouse
4141148	Cq5_m	cholesterol QTL 5 (mouse)			Not determined		9	32541121	66541246	Mouse
1301692	Hts_m	hypothermia sensitivity (mouse)			Not determined		9	32599872	66600121	Mouse
4141323	Ptnu3_m	proteinuria 3 (mouse)			Not determined		9	32978402	66978536	Mouse
1357709	Si5lq3_m	serum IGFBP-5 level QTL 3 (mouse)			Not determined		9	33199725	67199840	Mouse
1558872	Ibdq1_m	inflammatory bowel disease QTL 1 (mouse)			Not determined		9	34067544	73531973	Mouse
1357682	Phdlc1_m	plasma HDL cholesterol 1 (mouse)			Not determined		9	34193323	42853570	Mouse
1301252	Etohc3_m	ethanol consumption 3 (mouse)			Not determined		9	35123178	69123299	Mouse
1301972	Cocrb8_m	cocaine related behavior 8 (mouse)			Not determined		9	35123178	69123299	Mouse
1558968	Tbdr1_m	body temperature response to dietary restriction, QTL 1 (mouse)			Not determined		9	35123178	69123299	Mouse
10045613	Rapop7_m	radiation-induced apoptosis 6 (mouse)			Not determined		9	36824947	49509211	Mouse
1301501	Lmr2_m	leishmaniasis resistance 2 (mouse)			Not determined		9	37032110	50199840	Mouse
1301007	Pid2_m	prion incubation determinant 2 (mouse)			Not determined		9	37242066	44340026	Mouse
4142042	Alpq3_m	alcohol preference QTL 3 (mouse)			Not determined		9	37394901	98819654	Mouse
10043971	Obq32_m	obesity QTL 32 (mouse)			Not determined		9	37912244	71912244	Mouse
12791002	Arlsq2_m	aortic root lesion size QTL 2 (mouse)					9	38192291	72192291	Mouse
12790986	Pcho9_m	plasma cholesterol 9 (mouse)					9	38192291	72192291	Mouse
12790992	Arlsq1_m	aortic root lesion size QTL 1 (mouse)					9	38192291	72192291	Mouse
12738449	Spcq2_m	sperm count QTL 2 (mouse)					9	39492601	73492601	Mouse
1558993	Tdmq1_m	type 2 diabetes modifying QTL 1 (mouse)			Not determined		9	40508298	51897370	Mouse
4141071	Ath29_m	atherosclerosis 29 (mouse)			Not determined		9	40508298	74700643	Mouse
11532693	Sluc39_m	susceptibility to lung cancer 39 (mouse)					9	40734078	48440176	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	224
Count of miRNA genes:	202
Interacting mature miRNAs:	223
Transcripts:	ENSMUST00000067375
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_178245	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006510306	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_036154982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC158355	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY233396	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC104386	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC104387	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000067375 ⟹ ENSMUSP00000068057

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	9	40,874,127 - 40,880,057 (+)	Ensembl

RefSeq Acc Id:

NM_178245 ⟹ NP_839976

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	9	40,785,423 - 40,789,268 (+)	NCBI
GRCm38	9	40,874,127 - 40,877,972 (+)	NCBI
MGSCv37	9	40,682,210 - 40,686,055 (+)	RGD
Celera	9	38,108,339 - 38,112,231 (+)	RGD
cM Map	9		ENTREZGENE

Sequence:

show sequence

TGCTTCCTGCACTTTGTCCGGGCCCTCGCCCTGTGACAGGCGCTCTGCAAGATGAATCTCAACT
TCACTTCCCCTCTTCATCCAGCATCTTCTCAGAGGCCCACGTCGTTTTTCATCGAGGACATTCT
GCTACACAAGCCCAAGCCGTTGAGGGAAGTGGCCCCTGACCACTTTGCCAGCTCTCTGGCCTCT
AGGGTGCCTTTGCTAGACTATGGCTACCCCCTTATGCCCACACCCACCCTCCTCACCCCTCACG
CTCATCATCCTCTGCATAAGGGAGATCACCACCATCCTTATTTCCTGACCACCTCAGGGATGCC
GGTCCCGGCGCTGTTCCCGCACCCGCAGCACGCGGAGTTGCCCGGGAAGCACTGCCGCCGCCGC
AAAGCTCGCACGGTGTTTTCTGACTCGCAGCTCTCCGGCCTGGAGAAAAGGTTCGAAATCCAGC
GCTACCTGTCGACGCCAGAGCGTGTGGAGCTGGCCACTGCCCTCAGCCTCTCAGAGACTCAGGT
GAAAACGTGGTTCCAGAACCGGCGGATGAAGCATAAAAAGCAGCTGAGGAAAAGCCAAGACGAA
CCGAAAGCGGCAGACGGGCCGGAGAGCCCCGAAGGCAGCCCTCGTGCTCCCGAGGGCGCGCCCG
CCGACGCTCGGCTGAGCCTGCCCGCCGGTGCCTTCGTGCTTACTGAGCCCGAGGACGAAGTGGA
CATTGGGGATGAAGGCGAGCTCAGCTCAGGGCCGCATGTGCTCTGAGTGGCCAGGCTGGGAAGG
GAGACCCGGGCGAGGAGGCCGCGGGGCCAGACCGGGTTCTTCCCGGGTGGGAAGACTCGCGGAG
ACTCCAGACTGCTCCTGCGACCTGGGCTGGAAGAAAGAAAGGC

hide sequence

RefSeq Acc Id:

XM_006510306 ⟹ XP_006510369

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	9	40,785,696 - 40,790,258 (+)	NCBI
GRCm38	9	40,874,400 - 40,878,962 (+)	NCBI

Sequence:

show sequence

AAGGGAGATCACCACCATCCTTATTTCCTGACCACCTCAGATACTGGTGTCTGAGGCCCGGATG
CTTGGGGCGCCTAATATACCAGGGATGCCGGTCCCGGCGCTGTTCCCGCACCCGCAGCACGCGG
AGTTGCCCGGGAAGCACTGCCGCCGCCGCAAAGCTCGCACGGTGTTTTCTGACTCGCAGCTCTC
CGGCCTGGAGAAAAGGTTCGAAATCCAGCGCTACCTGTCGACGCCAGAGCGTGTGGAGCTGGCC
ACTGCCCTCAGCCTCTCAGAGACTCAGGTGAAAACGTGGTTCCAGAACCGGCGGATGAAGCATA
AAAAGCAGCTGAGGAAAAGCCAAGACGAACCGAAAGCGGCAGACGGGCCGGAGAGCCCCGAAGG
CAGCCCTCGTGCTCCCGAGGGCGCGCCCGCCGACGCTCGGCTGAGCCTGCCCGCCGGTGCCTTC
GTGCTTACTGAGCCCGAGGACGAAGTGGACATTGGGGATGAAGGCGAGCTCAGCTCAGGGCCGC
ATGTGCTCTGAGTGGCCAGGCTGGGAAGGGAGACCCGGGCGAGGAGGCCGCGGGGCCAGACCGG
GTTCTTCCCGGGTGGGAAGACTCGCGGAGACTCCAGACTGCTCCTGCGACCTGGGCTGGAAGAA
AGAAAGGCAAGCGCAGTCCACTTAGCAACTTGCAGCCGCCAGCGACTCCTTCCCATGCCTCCAC
CCCGTCCAACGGTTCCCTGTCGGGGATCACTAATGTGATCGCTGGTTCCCGCGCCCCGCGTCTC
CAGCGCCCCGGGACCTGCCGAGTGTCGCTGCTCAAACTAGCAGCTGGGCTCACGGTGGTACAAT
TCAACCGAGCGCCTCCAGCTCCGCGCGCCGCCAATGCAGAACCCCTCCATCCTCATGTCTCAGC
CACTTGTCATCCAGCTCTGTCACTCTGTCCCCGCGGCCTCCCCACCTAGGCGGTCGCTCTCCCT
AAAGCAGTTTAGTTGACCACAGATAAAGGAACCAAGTGTCTGGGGCTATGCCGGGATCCAGGCA
GCGCCCATCGGATTCTCTAAACCTTCAGAGCCCTTACTGTGTTGTTGGCGGCTGTTGACTACTA
CTGCTCACACCCCTACCGGGACCCTACATCTCTTATTGAAATCTTTAGGCGAACCCCTTCTTTT
GACTGCGCTTCCATCCTCGGGTGTCCCAAAAGTCATGGGTGCGCTCGGCGTCATGGGTGCGCTC
GGCGTCCCCGGGGCGCTTGTAGCGCTGAAGGGCTGGAGGCCTCCACAATCCCCTCCCTACAGAA
CTGTGGGCAGAGAACGTCCACAGCGCAATTTCTGCTTCCTGAACTTGTTGCACTCTTGTCCCGC
AACCCTTCCATGTCCCAAAGACTAAAGAGATTTTAAGCGATTGTCCTCGGGTTGTTTGCGGGTG
CGCTCAATTCTGTGCAGTGTTTTAGCAAGGCTTAGCCTCGCGACGAACGCACTCAACTGCCTTC
CGAATTAAAGCCAAGGGGGATGTGGGAGCGCACCTATTGGGGGGCCATTGAAGCTGTCTCTGTC
GCGTCCCTCTTCTCCTTTGCCCCTGGAAGGTCTTCTATTCTCTTACTAGGTCTGCAGTCTATTT
AGATAATAAAGGACTTGTGGGGCAAAAAATGGAAAGGA

hide sequence

RefSeq Acc Id:

XM_036154982 ⟹ XP_036010875

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	9	40,782,994 - 40,790,258 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_839976	(Get FASTA)	NCBI Sequence Viewer
	XP_006510369	(Get FASTA)	NCBI Sequence Viewer
	XP_036010875	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI04387	(Get FASTA)	NCBI Sequence Viewer
	AAI04388	(Get FASTA)	NCBI Sequence Viewer
	AAO84023	(Get FASTA)	NCBI Sequence Viewer
	Q810B3	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_839976 ⟸ NM_178245

- UniProtKB:

Q810B3 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MNLNFTSPLHPASSQRPTSFFIEDILLHKPKPLREVAPDHFASSLASRVPLLDYGYPLMPTPTL
LTPHAHHPLHKGDHHHPYFLTTSGMPVPALFPHPQHAELPGKHCRRRKARTVFSDSQLSGLEKR
FEIQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQLRKSQDEPKAADGPESPEGSPRAP
EGAPADARLSLPAGAFVLTEPEDEVDIGDEGELSSGPHVL

hide sequence

RefSeq Acc Id:	XP_006510369 ⟸ XM_006510306
- Peptide Label:	isoform X2
- Sequence:	show sequence MLGAPNIPGMPVPALFPHPQHAELPGKHCRRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVEL ATALSLSETQVKTWFQNRRMKHKKQLRKSQDEPKAADGPESPEGSPRAPEGAPADARLSLPAGA FVLTEPEDEVDIGDEGELSSGPHVL hide sequence

RefSeq Acc Id:

ENSMUSP00000068057 ⟸ ENSMUST00000067375

RefSeq Acc Id:	XP_036010875 ⟸ XM_036154982
- Peptide Label:	isoform X1

Promoters

RGD ID:

8669296

Promoter ID:

EPDNEW_M12679

Type:

multiple initiation site

Name:

Bsx_1

Description:

Mus musculus brain specific homeobox , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	9	40,874,084 - 40,874,144	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:2669849	AgrOrtholog
Ensembl Genes	ENSMUSG00000054360	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSMUSP00000068057	ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000067375	ENTREZGENE, UniProtKB/Swiss-Prot
InterPro	Homeobox-like_sf	UniProtKB/Swiss-Prot
	Homeobox_CS	UniProtKB/Swiss-Prot
	Homeobox_dom	UniProtKB/Swiss-Prot
	Homeobox_metazoa	UniProtKB/Swiss-Prot
KEGG Report	mmu:244813	UniProtKB/Swiss-Prot
MGD	MGI:2669849	ENTREZGENE
NCBI Gene	244813	ENTREZGENE
Pfam	Homeodomain	UniProtKB/Swiss-Prot
PhenoGen	Bsx	PhenoGen
PRINTS	HOMEOBOX	UniProtKB/Swiss-Prot
PROSITE	HOMEOBOX_1	UniProtKB/Swiss-Prot
	HOMEOBOX_2	UniProtKB/Swiss-Prot
SMART	HOX	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF46689	UniProtKB/Swiss-Prot
UniGene	Mm.261652	ENTREZGENE
UniProt	BSH_MOUSE	UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary	Q3SXB1	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar