Ptcd3 (pentatricopeptide repeat domain 3) - Rat Genome Database

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Gene: Ptcd3 (pentatricopeptide repeat domain 3) Mus musculus
Analyze
Symbol: Ptcd3
Name: pentatricopeptide repeat domain 3
RGD ID: 1557081
MGI Page MGI
Description: Predicted to enable rRNA binding activity and ribosomal small subunit binding activity. Predicted to be involved in mitochondrial translation. Predicted to act upstream of or within regulation of translation. Located in mitochondrion. Is expressed in several structures, including alimentary system; brain; cardiovascular system; genitourinary system; and hemolymphoid system. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 51. Orthologous to human PTCD3 (pentatricopeptide repeat domain 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2610034F17Rik; 2810422B04Rik; 28S ribosomal protein S39, mitochondrial; AA589622; AU045708; EST AA589622; MRP-S39; pentatricopeptide repeat domain-containing protein 3, mitochondrial; pentatricopeptide repeat-containing protein 3, mitochondrial; small ribosomal subunit protein mS39
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm16044  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39671,857,622 - 71,886,080 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl671,857,622 - 71,885,734 (-)EnsemblGRCm39 Ensembl
GRCm38671,880,638 - 71,908,773 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl671,880,638 - 71,908,750 (-)EnsemblGRCm38mm10GRCm38
MGSCv37671,830,632 - 71,858,756 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36671,810,143 - 71,838,271 (-)NCBIMGSCv36mm8
Celera673,964,270 - 73,992,389 (-)NCBICelera
Cytogenetic Map6C1NCBI
cM Map632.21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12904583   PMID:14610273   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18614015   PMID:18799693  
PMID:21267068   PMID:21873635   PMID:24194600   PMID:25838379   PMID:27023846   PMID:27480124   PMID:28378742   PMID:30550785   PMID:32325033   PMID:32554809   PMID:32581705   PMID:34133714  
PMID:36114006   PMID:36417873  


Genomics

Comparative Map Data
Ptcd3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39671,857,622 - 71,886,080 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl671,857,622 - 71,885,734 (-)EnsemblGRCm39 Ensembl
GRCm38671,880,638 - 71,908,773 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl671,880,638 - 71,908,750 (-)EnsemblGRCm38mm10GRCm38
MGSCv37671,830,632 - 71,858,756 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36671,810,143 - 71,838,271 (-)NCBIMGSCv36mm8
Celera673,964,270 - 73,992,389 (-)NCBICelera
Cytogenetic Map6C1NCBI
cM Map632.21NCBI
PTCD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38286,106,235 - 86,142,157 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl286,106,223 - 86,142,157 (+)EnsemblGRCh38hg38GRCh38
GRCh37286,333,358 - 86,369,280 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36286,186,849 - 86,222,791 (+)NCBINCBI36Build 36hg18NCBI36
Celera286,161,451 - 86,197,422 (+)NCBICelera
Cytogenetic Map2p11.2NCBI
HuRef286,230,802 - 86,266,770 (+)NCBIHuRef
CHM1_1286,262,762 - 86,298,735 (+)NCBICHM1_1
T2T-CHM13v2.0286,108,305 - 86,144,223 (+)NCBIT2T-CHM13v2.0
Ptcd3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84105,480,699 - 105,508,007 (-)NCBIGRCr8
mRatBN7.24103,922,440 - 103,957,445 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4103,920,566 - 103,957,538 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4109,302,272 - 109,329,594 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04105,077,394 - 105,104,710 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04103,692,346 - 103,719,632 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0499,795,646 - 99,822,960 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl499,795,656 - 99,822,992 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04164,570,737 - 164,600,868 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44105,159,834 - 105,187,103 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera493,078,738 - 93,106,021 (-)NCBICelera
Cytogenetic Map4q32NCBI
Ptcd3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554241,481,393 - 1,508,495 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554241,480,934 - 1,507,621 (-)NCBIChiLan1.0ChiLan1.0
PTCD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21240,243,089 - 40,277,626 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A40,245,850 - 40,280,387 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A86,157,741 - 86,192,227 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A87,705,389 - 87,740,432 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A87,705,389 - 87,740,432 (+)Ensemblpanpan1.1panPan2
PTCD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11738,970,385 - 39,000,370 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1738,970,340 - 39,000,329 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1738,656,056 - 38,686,034 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01739,703,585 - 39,733,559 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1739,702,814 - 39,733,516 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11738,872,110 - 38,902,087 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01738,907,905 - 38,937,849 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01739,294,174 - 39,324,153 (-)NCBIUU_Cfam_GSD_1.0
Ptcd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629279,527,715 - 79,553,363 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367121,305,054 - 1,330,757 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367121,305,085 - 1,330,705 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTCD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl358,628,614 - 58,670,760 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1358,632,214 - 58,670,785 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2361,492,646 - 61,530,066 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PTCD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11421,019,249 - 21,050,453 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1421,015,333 - 21,050,453 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604591,437,521 - 91,468,764 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ptcd3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474917,108,669 - 17,138,692 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474917,107,169 - 17,138,112 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ptcd3
940 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:120
Count of miRNA genes:107
Interacting mature miRNAs:117
Transcripts:ENSMUST00000082094
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487403016Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396633110Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396633110Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396633110Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396633110Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080576983Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414773364675Mouse
13208564Bmiq7_mbody mass index QTL 7 (mouse)62499999979976983Mouse
4141782Mrdq5_mmodifier of retinal degeneration QTL 5 (mouse)Not determined3282758578215957Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63864656092584431Mouse
12880424V25Dq4_mvitamin D inactive form serum level QTL 4 (mouse)64157698575576985Mouse
11040600Lmr4c_mleishmaniasis resistance 4c (mouse)64209335876093500Mouse
11040601Lmr4a_mleishmaniasis resistance 4a (mouse)64209335876093500Mouse
11533915Mts4_mmammary tumor susceptibility 4 (mouse)64209335876093500Mouse
1301266Lmr4_mleishmaniasis resistance 4 (mouse)Not determined64209335876093500Mouse
12910785Pwgrq16_mpost-weaning growth rate QTL 16 (mouse)64380374777788506Mouse
12910798Pwgrq5_mpre-weaning growth rate QTL 5 (mouse)64380374777788506Mouse
12910802Pwbwq12_mpost-weaning body weight QTL 12 (mouse)64380374777788506Mouse
12910807Pwbwq11_mpost-weaning body weight QTL 11 (mouse)64380374777788506Mouse
12910809Pwbwq10_mpost-weaning body weight QTL 10 (mouse)64380374777788506Mouse
12910820Ogrq3_moverall growth rate QTL 3 (mouse)64380374777788506Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64529099387403016Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645290993128811995Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46912919136400690Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648696934125336963Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648696934148351498Mouse
4140983Srilp_msleep response to influenza, light phase (mouse)Not determined4870349075424693Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648703490125333748Mouse
1301254Skts11_mskin tumor susceptibility 11 (mouse)Not determined65115613485156284Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652138693116132228Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5435041188356155Mouse
15039373Adip28_madiposity 28 (mouse)65628519490285194Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65628519490285194Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65842456692424693Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65851741692517416Mouse
10412119Stv_mstriatal volumne (mouse)Not determined660026991100026967Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66003466394034782Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66346172197461888Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666690851100691013Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670402880104403016Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670402880104403016Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670402880104403016Mouse
4141990Etax6_methanol induced ataxia 6 (mouse)Not determined7129960586252701Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67129960593441074Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671552042105552160Mouse

Markers in Region
AU045708  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv372119,780,971 - 119,781,237UniSTSGRCm37
MGSCv37671,830,751 - 71,831,017UniSTSGRCm37
Celera673,964,389 - 73,964,655UniSTS
Celera659,658,071 - 59,658,337UniSTS
Celera2121,112,734 - 121,112,987UniSTS
Cytogenetic Map6C1UniSTS
RH125021  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38671,882,305 - 71,882,565UniSTSGRCm38
MGSCv37671,832,299 - 71,832,559UniSTSGRCm37
Celera673,965,937 - 73,966,197UniSTS
Cytogenetic Map6C1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001362068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_027275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_155284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_155285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006506574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011241461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001785164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001785166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001785167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_868886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_868888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC122200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB844000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC055844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC068263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC084595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC115434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF020753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000082094   ⟹   ENSMUSP00000080743
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl671,857,624 - 71,885,734 (-)Ensembl
GRCm38.p6 Ensembl671,880,640 - 71,908,750 (-)Ensembl
RefSeq Acc Id: ENSMUST00000205269
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl671,857,622 - 71,859,579 (-)Ensembl
GRCm38.p6 Ensembl671,880,638 - 71,882,595 (-)Ensembl
RefSeq Acc Id: ENSMUST00000205293
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl671,872,277 - 71,875,420 (-)Ensembl
GRCm38.p6 Ensembl671,895,293 - 71,898,436 (-)Ensembl
RefSeq Acc Id: ENSMUST00000205420
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl671,879,671 - 71,880,455 (-)Ensembl
GRCm38.p6 Ensembl671,902,687 - 71,903,471 (-)Ensembl
RefSeq Acc Id: ENSMUST00000205556   ⟹   ENSMUSP00000145813
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl671,865,592 - 71,874,136 (-)Ensembl
GRCm38.p6 Ensembl671,888,608 - 71,897,152 (-)Ensembl
RefSeq Acc Id: ENSMUST00000205691
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl671,857,627 - 71,866,663 (-)Ensembl
GRCm38.p6 Ensembl671,880,643 - 71,889,679 (-)Ensembl
RefSeq Acc Id: ENSMUST00000205761
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl671,864,238 - 71,885,728 (-)Ensembl
GRCm38.p6 Ensembl671,887,254 - 71,908,744 (-)Ensembl
RefSeq Acc Id: ENSMUST00000206284   ⟹   ENSMUSP00000145566
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl671,875,377 - 71,885,702 (-)Ensembl
GRCm38.p6 Ensembl671,898,393 - 71,908,718 (-)Ensembl
RefSeq Acc Id: ENSMUST00000206631
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl671,869,962 - 71,872,118 (-)Ensembl
GRCm38.p6 Ensembl671,892,978 - 71,895,134 (-)Ensembl
RefSeq Acc Id: ENSMUST00000206762
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl671,862,089 - 71,866,588 (-)Ensembl
GRCm38.p6 Ensembl671,885,105 - 71,889,604 (-)Ensembl
RefSeq Acc Id: ENSMUST00000206879   ⟹   ENSMUSP00000146260
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl671,857,625 - 71,885,734 (-)Ensembl
GRCm38.p6 Ensembl671,880,641 - 71,908,750 (-)Ensembl
RefSeq Acc Id: NM_001362068   ⟹   NP_001348997
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39671,857,622 - 71,885,746 (-)NCBI
GRCm38671,880,638 - 71,908,762 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001362069   ⟹   NP_001348998
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39671,857,622 - 71,885,746 (-)NCBI
GRCm38671,880,638 - 71,908,762 (-)NCBI
Sequence:
RefSeq Acc Id: NM_027275   ⟹   NP_081551
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39671,857,622 - 71,885,746 (-)NCBI
GRCm38671,880,638 - 71,908,762 (-)NCBI
MGSCv37671,830,632 - 71,858,756 (-)RGD
Celera673,964,270 - 73,992,389 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_155284
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39671,857,622 - 71,885,746 (-)NCBI
GRCm38671,880,638 - 71,908,762 (-)NCBI
Sequence:
RefSeq Acc Id: NR_155285
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39671,857,622 - 71,885,746 (-)NCBI
GRCm38671,880,638 - 71,908,762 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006506574   ⟹   XP_006506637
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39671,857,622 - 71,885,755 (-)NCBI
GRCm38671,880,638 - 71,908,762 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011241461   ⟹   XP_011239763
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39671,872,004 - 71,886,080 (-)NCBI
GRCm38671,895,020 - 71,908,773 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001785164
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39671,857,622 - 71,886,080 (-)NCBI
GRCm38671,880,638 - 71,908,773 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001785166
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39671,857,622 - 71,886,080 (-)NCBI
GRCm38671,880,638 - 71,908,773 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001785167
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39671,857,622 - 71,886,080 (-)NCBI
GRCm38671,880,638 - 71,908,773 (-)NCBI
Sequence:
RefSeq Acc Id: XR_868886
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39671,857,622 - 71,886,080 (-)NCBI
GRCm38671,880,638 - 71,908,773 (-)NCBI
Sequence:
RefSeq Acc Id: XR_868888
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39671,858,628 - 71,886,080 (-)NCBI
GRCm38671,880,638 - 71,908,773 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_081551   ⟸   NM_027275
- Peptide Label: isoform 1 precursor
- UniProtKB: Q6P9N5 (UniProtKB/Swiss-Prot),   Q5XG65 (UniProtKB/Swiss-Prot),   Q3UKH5 (UniProtKB/Swiss-Prot),   Q9CZ12 (UniProtKB/Swiss-Prot),   Q14C51 (UniProtKB/Swiss-Prot),   Q3UK51 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006506637   ⟸   XM_006506574
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011239763   ⟸   XM_011241461
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: NP_001348998   ⟸   NM_001362069
- Peptide Label: isoform 3 precursor
- UniProtKB: Q3UK51 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001348997   ⟸   NM_001362068
- Peptide Label: isoform 2 precursor
- UniProtKB: Q3UK51 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000146260   ⟸   ENSMUST00000206879
RefSeq Acc Id: ENSMUSP00000145566   ⟸   ENSMUST00000206284
RefSeq Acc Id: ENSMUSP00000145813   ⟸   ENSMUST00000205556
RefSeq Acc Id: ENSMUSP00000080743   ⟸   ENSMUST00000082094

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q14C51-F1-model_v2 AlphaFold Q14C51 1-685 view protein structure

Promoters
RGD ID:6839828
Promoter ID:MM_KWN:46438
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   Brain,   Kidney,   Lung,   MEF_B6
Transcripts:ENSMUST00000116815,   UC009CHP.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36671,832,281 - 71,833,432 (-)MPROMDB
RGD ID:6839819
Promoter ID:MM_KWN:46439
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000082094,   NM_027275,   UC009CHR.1,   UC009CHS.1,   UC009CHT.1,   UC009CHU.1,   UC009CHV.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36671,858,081 - 71,859,442 (-)MPROMDB
RGD ID:6889990
Promoter ID:EPDNEW_M8446
Type:single initiation site
Name:Ptcd3_2
Description:Mus musculus pentatricopeptide repeat domain 3 , transcript variant4, non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8447  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38671,881,170 - 71,881,230EPDNEW
RGD ID:6889992
Promoter ID:EPDNEW_M8447
Type:multiple initiation site
Name:Ptcd3_1
Description:Mus musculus pentatricopeptide repeat domain 3 , transcript variant4, non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8446  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38671,908,750 - 71,908,810EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1917206 AgrOrtholog
Ensembl Genes ENSMUSG00000063884 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000082094 ENTREZGENE
  ENSMUST00000082094.5 UniProtKB/Swiss-Prot
  ENSMUST00000205556.2 UniProtKB/TrEMBL
  ENSMUST00000206284.2 UniProtKB/TrEMBL
  ENSMUST00000206879 ENTREZGENE
  ENSMUST00000206879.2 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Pentatricopeptide_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTCD3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:69956 UniProtKB/Swiss-Prot
MGD MGI:1917206 ENTREZGENE
NCBI Gene 69956 ENTREZGENE
PANTHER PENTATRICOPEPTIDE REPEAT DOMAIN-CONTAINING PROTEIN 3, MITOCHONDRIAL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR16276 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PPR_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ptcd3 PhenoGen
PROSITE PPR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0U1RNH5_MOUSE UniProtKB/TrEMBL
  A0A0U1RP36_MOUSE UniProtKB/TrEMBL
  A0A0U1RQ61_MOUSE UniProtKB/TrEMBL
  PTCD3_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3UK51 ENTREZGENE, UniProtKB/TrEMBL
  Q3UKH5 ENTREZGENE
  Q5XG65 ENTREZGENE
  Q6NV85_MOUSE UniProtKB/TrEMBL
  Q6P9N5 ENTREZGENE
  Q8BSI7_MOUSE UniProtKB/TrEMBL
  Q9CZ12 ENTREZGENE
UniProt Secondary Q3UKH5 UniProtKB/Swiss-Prot
  Q5XG65 UniProtKB/Swiss-Prot
  Q6P9N5 UniProtKB/Swiss-Prot
  Q9CZ12 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 Ptcd3  pentatricopeptide repeat domain 3  AA589622  EST AA589622  Data merged from RGD:1610912 737654 PROVISIONAL