Ptcd3 (pentatricopeptide repeat domain 3) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Ptcd3 (pentatricopeptide repeat domain 3) Mus musculus
Analyze
Symbol: Ptcd3
Name: pentatricopeptide repeat domain 3
RGD ID: 1557081
MGI Page MGI
Description: Predicted to have rRNA binding activity and ribosomal small subunit binding activity. Predicted to be involved in mitochondrial translation. Localizes to mitochondrion. Orthologous to human PTCD3 (pentatricopeptide repeat domain 3); INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2610034F17Rik; 2810422B04Rik; 28S ribosomal protein S39, mitochondrial; AA589622; AU045708; EST AA589622; MRP-S39; pentatricopeptide repeat domain-containing protein 3, mitochondrial; pentatricopeptide repeat-containing protein 3, mitochondrial
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm16044  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39671,857,622 - 71,886,080 (-)NCBIGRCm39mm39
GRCm38671,880,638 - 71,908,773 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl671,880,638 - 71,908,750 (-)EnsemblGRCm38mm10GRCm38
MGSCv37671,830,632 - 71,858,756 (-)NCBIGRCm37mm9NCBIm37
MGSCv36671,810,143 - 71,838,271 (-)NCBImm8
Celera673,964,270 - 73,992,389 (-)NCBICelera
Cytogenetic Map6C1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (ISO)
mitochondrion  (HDA,IBA,ISO)
nucleoplasm  (ISO)
plasma membrane  (ISO)
ribosome  (IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12904583   PMID:14610273   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18614015   PMID:18799693  
PMID:21267068   PMID:21873635   PMID:27480124   PMID:28378742   PMID:32325033   PMID:32581705  


Genomics

Comparative Map Data
Ptcd3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39671,857,622 - 71,886,080 (-)NCBIGRCm39mm39
GRCm38671,880,638 - 71,908,773 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl671,880,638 - 71,908,750 (-)EnsemblGRCm38mm10GRCm38
MGSCv37671,830,632 - 71,858,756 (-)NCBIGRCm37mm9NCBIm37
MGSCv36671,810,143 - 71,838,271 (-)NCBImm8
Celera673,964,270 - 73,992,389 (-)NCBICelera
Cytogenetic Map6C1NCBI
PTCD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl286,106,223 - 86,142,157 (+)EnsemblGRCh38hg38GRCh38
GRCh38286,106,235 - 86,142,157 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37286,333,305 - 86,369,280 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh37286,333,358 - 86,369,280 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36286,186,849 - 86,222,791 (+)NCBINCBI36hg18NCBI36
Celera286,161,451 - 86,197,422 (+)NCBI
Cytogenetic Map2p11.2NCBI
HuRef286,230,802 - 86,266,770 (+)NCBIHuRef
CHM1_1286,262,762 - 86,298,735 (+)NCBICHM1_1
Ptcd3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24103,922,440 - 103,957,445 (-)NCBI
Rnor_6.0 Ensembl499,795,656 - 99,822,992 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0499,795,646 - 99,822,960 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04164,570,737 - 164,600,868 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44105,159,834 - 105,187,103 (-)NCBIRGSC3.4rn4RGSC3.4
Celera493,078,738 - 93,106,021 (-)NCBICelera
Cytogenetic Map4q31NCBI
Ptcd3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554241,481,393 - 1,508,495 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554241,480,934 - 1,507,621 (-)NCBIChiLan1.0ChiLan1.0
PTCD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A87,705,389 - 87,740,432 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A87,705,389 - 87,740,432 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A86,157,741 - 86,192,227 (+)NCBIMhudiblu_PPA_v0panPan3
PTCD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1738,970,340 - 39,000,329 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11738,970,385 - 39,000,370 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Ptcd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049367121,305,085 - 1,330,705 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTCD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl358,628,614 - 58,670,788 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1358,632,214 - 58,670,785 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2361,492,646 - 61,530,066 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PTCD3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11421,019,249 - 21,050,453 (-)NCBI
ChlSab1.1 Ensembl1421,015,333 - 21,050,453 (-)Ensembl
Ptcd3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474917,107,169 - 17,138,112 (-)NCBI

Position Markers
AU045708  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv372119,780,971 - 119,781,237UniSTSGRCm37
MGSCv37671,830,751 - 71,831,017UniSTSGRCm37
Celera673,964,389 - 73,964,655UniSTS
Celera659,658,071 - 59,658,337UniSTS
Celera2121,112,734 - 121,112,987UniSTS
Cytogenetic Map6C1UniSTS
RH125021  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38671,882,305 - 71,882,565UniSTSGRCm38
MGSCv37671,832,299 - 71,832,559UniSTSGRCm37
Celera673,965,937 - 73,966,197UniSTS
Cytogenetic Map6C1UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487426034Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080600000Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414873387692Mouse
13208564Bmiq7_mbody mass index QTL 7 (mouse)62500000080000000Mouse
4141782Mrdq5_mmodifier of retinal degeneration QTL 5 (mouse)Not determined3285065078238974Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
12880424V25Dq4_mvitamin D inactive form serum level QTL 4 (mouse)64160000075600000Mouse
1301266Lmr4_mleishmaniasis resistance 4 (mouse)Not determined64211637376116515Mouse
11040600Lmr4c_mleishmaniasis resistance 4c (mouse)64211637376116515Mouse
11040601Lmr4a_mleishmaniasis resistance 4a (mouse)64211637376116515Mouse
11533915Mts4_mmammary tumor susceptibility 4 (mouse)64211637376116515Mouse
12910785Pwgrq16_mpost-weaning growth rate QTL 16 (mouse)64382681377811523Mouse
12910798Pwgrq5_mpre-weaning growth rate QTL 5 (mouse)64382681377811523Mouse
12910802Pwbwq12_mpost-weaning body weight QTL 12 (mouse)64382681377811523Mouse
12910807Pwbwq11_mpost-weaning body weight QTL 11 (mouse)64382681377811523Mouse
12910809Pwbwq10_mpost-weaning body weight QTL 10 (mouse)64382681377811523Mouse
12910820Ogrq3_moverall growth rate QTL 3 (mouse)64382681377811523Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64531405987426034Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
4140983Srilp_msleep response to influenza, light phase (mouse)Not determined4872655675447710Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1301254Skts11_mskin tumor susceptibility 11 (mouse)Not determined65117915085179300Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5437342788379171Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
4141990Etax6_methanol induced ataxia 6 (mouse)Not determined7132262186275719Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:120
Count of miRNA genes:107
Interacting mature miRNAs:117
Transcripts:ENSMUST00000082094
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001362068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_027275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_155284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_155285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006506574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011241461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001785164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001785166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001785167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_868886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_868888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC122200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB844000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC055844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC068263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC084595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC115434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF020753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000082094   ⟹   ENSMUSP00000080743
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl671,880,640 - 71,908,750 (-)Ensembl
RefSeq Acc Id: ENSMUST00000205269
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl671,880,638 - 71,882,595 (-)Ensembl
RefSeq Acc Id: ENSMUST00000205293
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl671,895,293 - 71,898,436 (-)Ensembl
RefSeq Acc Id: ENSMUST00000205420
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl671,902,687 - 71,903,471 (-)Ensembl
RefSeq Acc Id: ENSMUST00000205556   ⟹   ENSMUSP00000145813
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl671,888,608 - 71,897,152 (-)Ensembl
RefSeq Acc Id: ENSMUST00000205691
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl671,880,643 - 71,889,679 (-)Ensembl
RefSeq Acc Id: ENSMUST00000205761
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl671,887,254 - 71,908,744 (-)Ensembl
RefSeq Acc Id: ENSMUST00000206284   ⟹   ENSMUSP00000145566
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl671,898,393 - 71,908,718 (-)Ensembl
RefSeq Acc Id: ENSMUST00000206631
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl671,892,978 - 71,895,134 (-)Ensembl
RefSeq Acc Id: ENSMUST00000206762
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl671,885,105 - 71,889,604 (-)Ensembl
RefSeq Acc Id: ENSMUST00000206879   ⟹   ENSMUSP00000146260
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl671,880,641 - 71,908,750 (-)Ensembl
RefSeq Acc Id: NM_001362068   ⟹   NP_001348997
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39671,857,622 - 71,885,746 (-)NCBI
GRCm38671,880,638 - 71,908,762 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001362069   ⟹   NP_001348998
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39671,857,622 - 71,885,746 (-)NCBI
GRCm38671,880,638 - 71,908,762 (-)NCBI
Sequence:
RefSeq Acc Id: NM_027275   ⟹   NP_081551
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39671,857,622 - 71,885,746 (-)NCBI
GRCm38671,880,638 - 71,908,762 (-)NCBI
MGSCv37671,830,632 - 71,858,756 (-)RGD
Celera673,964,270 - 73,992,389 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_155284
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39671,857,622 - 71,885,746 (-)NCBI
GRCm38671,880,638 - 71,908,762 (-)NCBI
Sequence:
RefSeq Acc Id: NR_155285
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39671,857,622 - 71,885,746 (-)NCBI
GRCm38671,880,638 - 71,908,762 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006506574   ⟹   XP_006506637
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39671,857,622 - 71,885,755 (-)NCBI
GRCm38671,880,638 - 71,908,762 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011241461   ⟹   XP_011239763
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39671,872,004 - 71,886,080 (-)NCBI
GRCm38671,895,020 - 71,908,773 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001785164
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39671,857,622 - 71,886,080 (-)NCBI
GRCm38671,880,638 - 71,908,773 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001785166
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39671,857,622 - 71,886,080 (-)NCBI
GRCm38671,880,638 - 71,908,773 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001785167
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39671,857,622 - 71,886,080 (-)NCBI
GRCm38671,880,638 - 71,908,773 (-)NCBI
Sequence:
RefSeq Acc Id: XR_868886
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39671,857,622 - 71,886,080 (-)NCBI
GRCm38671,880,638 - 71,908,773 (-)NCBI
Sequence:
RefSeq Acc Id: XR_868888
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39671,858,628 - 71,886,080 (-)NCBI
GRCm38671,880,638 - 71,908,773 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_081551   ⟸   NM_027275
- Peptide Label: isoform 1 precursor
- UniProtKB: Q14C51 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006506637   ⟸   XM_006506574
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011239763   ⟸   XM_011241461
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: NP_001348998   ⟸   NM_001362069
- Peptide Label: isoform 3 precursor
RefSeq Acc Id: NP_001348997   ⟸   NM_001362068
- Peptide Label: isoform 2 precursor
RefSeq Acc Id: ENSMUSP00000146260   ⟸   ENSMUST00000206879
RefSeq Acc Id: ENSMUSP00000145566   ⟸   ENSMUST00000206284
RefSeq Acc Id: ENSMUSP00000145813   ⟸   ENSMUST00000205556
RefSeq Acc Id: ENSMUSP00000080743   ⟸   ENSMUST00000082094

Promoters
RGD ID:6839828
Promoter ID:MM_KWN:46438
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   Brain,   Kidney,   Lung,   MEF_B6
Transcripts:ENSMUST00000116815,   UC009CHP.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36671,832,281 - 71,833,432 (-)MPROMDB
RGD ID:6839819
Promoter ID:MM_KWN:46439
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000082094,   NM_027275,   UC009CHR.1,   UC009CHS.1,   UC009CHT.1,   UC009CHU.1,   UC009CHV.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36671,858,081 - 71,859,442 (-)MPROMDB
RGD ID:6889990
Promoter ID:EPDNEW_M8446
Type:single initiation site
Name:Ptcd3_2
Description:Mus musculus pentatricopeptide repeat domain 3 , transcript variant4, non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8447  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38671,881,170 - 71,881,230EPDNEW
RGD ID:6889992
Promoter ID:EPDNEW_M8447
Type:multiple initiation site
Name:Ptcd3_1
Description:Mus musculus pentatricopeptide repeat domain 3 , transcript variant4, non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8446  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38671,908,750 - 71,908,810EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1917206 AgrOrtholog
Ensembl Genes ENSMUSG00000063884 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000080743 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000145566 UniProtKB/TrEMBL
  ENSMUSP00000145813 UniProtKB/TrEMBL
  ENSMUSP00000146260 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000082094 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000205556 UniProtKB/TrEMBL
  ENSMUST00000206284 UniProtKB/TrEMBL
  ENSMUST00000206879 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Pentatricopeptide_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTCD3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:69956 UniProtKB/Swiss-Prot
MGD MGI:1917206 ENTREZGENE
NCBI Gene 69956 ENTREZGENE
PANTHER PTHR16276 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PPR_2 UniProtKB/TrEMBL
  PPR_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ptcd3 PhenoGen
PROSITE PPR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0U1RNH5_MOUSE UniProtKB/TrEMBL
  A0A0U1RP36_MOUSE UniProtKB/TrEMBL
  A0A0U1RQ61_MOUSE UniProtKB/TrEMBL
  PTCD3_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3UK51_MOUSE UniProtKB/TrEMBL
  Q6NV85_MOUSE UniProtKB/TrEMBL
  Q8BSI7_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q3UKH5 UniProtKB/Swiss-Prot
  Q5XG65 UniProtKB/Swiss-Prot
  Q6P9N5 UniProtKB/Swiss-Prot
  Q9CZ12 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 Ptcd3  pentatricopeptide repeat domain 3  AA589622  EST AA589622  Data Merged 737654 PROVISIONAL