Sestd1 (SEC14 and spectrin domains 1) - Rat Genome Database

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Gene: Sestd1 (SEC14 and spectrin domains 1) Mus musculus
Analyze
Symbol: Sestd1
Name: SEC14 and spectrin domains 1
RGD ID: 1557021
MGI Page MGI
Description: Predicted to enable phosphatidylinositol-3,4-bisphosphate binding activity and phospholipid binding activity. Predicted to be involved in negative regulation of calcium ion transmembrane transport via high voltage-gated calcium channel. Predicted to be located in intermediate filament cytoskeleton. Predicted to be part of calcium channel complex. Is expressed in cranial ganglion and dorsal root ganglion. Orthologous to human SESTD1 (SEC14 and spectrin domain containing 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1500031J16Rik; A930010O20; huntingtin-interacting protein-like protein; MGC51459; SEC14 domain and spectrin repeat-containing protein 1; Solo/Trio8
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm9165  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39277,010,684 - 77,111,160 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl277,010,684 - 77,110,936 (-)EnsemblGRCm39 Ensembl
GRCm38277,180,340 - 77,280,627 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl277,180,340 - 77,280,592 (-)EnsemblGRCm38mm10GRCm38
MGSCv37277,024,132 - 77,083,146 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36276,987,394 - 77,081,431 (-)NCBIMGSCv36mm8
Celera278,847,166 - 78,901,099 (-)NCBICelera
Cytogenetic Map2C3NCBI
cM Map245.92NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11544199   PMID:12837271   PMID:14610273   PMID:14691545   PMID:15102471   PMID:16141072   PMID:16141073  
PMID:16943433   PMID:18685082   PMID:18799693   PMID:21267068   PMID:21873635   PMID:23696638   PMID:26496610   PMID:28671696   PMID:28706196   PMID:29293918   PMID:32554809   PMID:36604605  


Genomics

Comparative Map Data
Sestd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39277,010,684 - 77,111,160 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl277,010,684 - 77,110,936 (-)EnsemblGRCm39 Ensembl
GRCm38277,180,340 - 77,280,627 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl277,180,340 - 77,280,592 (-)EnsemblGRCm38mm10GRCm38
MGSCv37277,024,132 - 77,083,146 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36276,987,394 - 77,081,431 (-)NCBIMGSCv36mm8
Celera278,847,166 - 78,901,099 (-)NCBICelera
Cytogenetic Map2C3NCBI
cM Map245.92NCBI
SESTD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382179,101,678 - 179,264,832 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2179,101,678 - 179,264,832 (-)EnsemblGRCh38hg38GRCh38
GRCh372179,966,405 - 180,129,559 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362179,681,776 - 179,764,838 (-)NCBINCBI36Build 36hg18NCBI36
Build 342179,799,036 - 179,954,752NCBI
Celera2173,560,816 - 173,723,730 (-)NCBICelera
Cytogenetic Map2q31.2NCBI
HuRef2171,835,120 - 171,981,416 (-)NCBIHuRef
CHM1_12179,972,587 - 180,135,211 (-)NCBICHM1_1
T2T-CHM13v2.02179,584,873 - 179,748,044 (-)NCBIT2T-CHM13v2.0
Sestd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8382,530,796 - 82,627,960 (-)NCBIGRCr8
mRatBN7.2362,123,590 - 62,220,759 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl362,129,887 - 62,220,546 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx365,485,187 - 65,553,738 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0374,068,858 - 74,137,413 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0371,837,190 - 71,905,634 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0364,037,814 - 64,134,973 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl364,044,112 - 64,095,120 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0370,613,828 - 70,702,994 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4359,872,507 - 59,875,174 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera361,613,696 - 61,682,509 (-)NCBICelera
Cytogenetic Map3q24NCBI
Sestd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540317,729,344 - 17,828,278 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540317,761,404 - 17,835,528 (+)NCBIChiLan1.0ChiLan1.0
SESTD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21381,749,834 - 81,912,123 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B81,764,808 - 81,927,093 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B66,359,668 - 66,522,271 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B184,062,164 - 184,151,657 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B184,062,164 - 184,151,657 (-)Ensemblpanpan1.1panPan2
SESTD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13622,648,732 - 22,742,009 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3622,651,570 - 22,741,997 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3622,670,052 - 22,812,345 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03622,808,081 - 22,950,717 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3622,809,040 - 22,950,903 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13622,903,707 - 23,045,993 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03622,867,186 - 23,009,396 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03622,989,893 - 23,132,276 (-)NCBIUU_Cfam_GSD_1.0
Sestd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303139,670,921 - 139,749,332 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365098,225,245 - 8,303,279 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365098,225,252 - 8,303,257 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SESTD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1584,760,451 - 84,849,319 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11584,762,923 - 84,892,580 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21594,262,733 - 94,388,673 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SESTD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11064,628,812 - 64,779,775 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1064,629,913 - 64,779,543 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040134,771,715 - 134,922,468 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sestd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248441,029,054 - 1,133,060 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248441,029,054 - 1,133,268 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sestd1
3228 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2250
Count of miRNA genes:832
Interacting mature miRNAs:1078
Transcripts:ENSMUST00000102659, ENSMUST00000102660, ENSMUST00000139021, ENSMUST00000145366
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
1300577Capsq1_mcapsaicin sensitivity related QTL 1 (mouse)Not determined22760206084013384Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
1301109Dntcs2_mdental caries susceptibility 2 (mouse)Not determined240885493114910165Mouse
4141069Pbwg1.5_mpostnatal body weight growth 1.5 (mouse)Not determined4352061277520756Mouse
1300788Cia2_mcollagen induced arthritis QTL 2 (mouse)Not determined24352061277520756Mouse
1300671Cia4_mcollagen induced arthritis QTL 4 (mouse)Not determined24352061277520756Mouse
1301402Ap2q_malcohol preference 2 QTL (mouse)Not determined24352061277520756Mouse
1301411Pitm1_mprion incubation time 1 (mouse)Not determined24352061277520756Mouse
10755532Lymph5_mlymphocyte differential 5 (mouse)24419901778199017Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
11532740Pbwg1.10_mpostnatal body weight growth 1.10 (mouse)24813241282132495Mouse
1558820Moo1_mmodifier of Odc1 (mouse)Not determined174826974682269934Mouse
1301747Eae21_mexperimental allergic encephalomyelitis 21 (mouse)Not determined24826974682269934Mouse
1301235Alcw4_malcohol withdrawal 4 (mouse)Not determined24826974682269934Mouse
1300568Hdl1_mhigh density lipoprotein (HDL) level 1 (mouse)Not determined24826974682269934Mouse
10755526Lymph1_mlymphocyte differential 1 (mouse)25081931484819314Mouse
1300875Taste1_mtaste-saccharin preference 1 (mouse)Not determined25092317584923278Mouse
1300761Lgth1_mbody length 1 (mouse)Not determined25170327685703425Mouse
13464141Hbbcq3_mhemoglobin concentration QTL 3 (mouse)25244801986448136Mouse
13463471Hctq6_mhematocrit QTL 6 (mouse)25244801986448136Mouse
4141406Alpq2_malcohol preference QTL 2 (mouse)Not determined25752411791524288Mouse
12738429Lfibq18_mliver fibrosis QTL 18 (mouse)25791999191919991Mouse
1357577Trmq3_mT cell ratio modifier QTL 3 (mouse)Not determined260520612119355518Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
10044002Hdl7_mHDL level 7 (mouse)Not determined26300595497006113Mouse
10053681Lith24_mlithogenic gene 24 (mouse)Not determined26300595497006113Mouse
1301405Etohr_methanol response acute (mouse)Not determined26300595497006113Mouse
1301703Bomd3_mbone mineral density 3 (mouse)Not determined26300595497006113Mouse
1300662Etohila_methanol induced locomotor activity (mouse)Not determined26300595497006113Mouse
1301048Actre2_mactivity response to ethanol 2 (mouse)Not determined26300595497006113Mouse
1301873Hsl1_mhyperoxia susceptibility locus 1 (mouse)Not determined26357015497570301Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
1301660Iba1_minduction of brown adipocytes 1 (mouse)Not determined267647887101648142Mouse
13463482Mchq17_mmean corpuscular hemoglobin QTL 17 (mouse)267647887101648142Mouse
1301882Etohc2_methanol consumption 2 (mouse)Not determined268724269102724407Mouse
1301948Elsgp3_melevated serum gp70 3 (mouse)Not determined268724269102724407Mouse
4142088Parms1_mpatched associated RMS 1 (mouse)Not determined74524117114123532Mouse
11528549Sluc31_msusceptibility to lung cancer 31 (mouse)274524117129213005Mouse
1301374Cplaq7_mcircadian period of locomotor activity 7 (mouse)Not determined276421483110421651Mouse
4141657Mohg1_mmodifier of hg 1 (mouse)Not determined276678758103095823Mouse

Markers in Region
UniSTS:234435  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38277,180,839 - 77,181,107UniSTSGRCm38
MGSCv37277,018,896 - 77,019,164UniSTSGRCm37
Celera278,841,930 - 78,842,198UniSTS
Cytogenetic Map2C3UniSTS
D2Mit299  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38277,200,891 - 77,200,990UniSTSGRCm38
MGSCv37277,038,948 - 77,039,047UniSTSGRCm37
Celera278,861,983 - 78,862,082UniSTS
Cytogenetic Map2C3UniSTS
cM Map247.0UniSTS
Whitehead Genetic244.8UniSTS
AW208992  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387120,513,940 - 120,514,020UniSTSGRCm38
GRCm38277,186,892 - 77,186,972UniSTSGRCm38
MGSCv377127,657,454 - 127,657,534UniSTSGRCm37
MGSCv37277,024,949 - 77,025,029UniSTSGRCm37
Celera7120,430,099 - 120,430,179UniSTS
Celera278,847,983 - 78,848,063UniSTS
Cytogenetic Map7F2UniSTS
Cytogenetic Map2C3UniSTS
Whitehead/MRC_RH21206.13UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_175465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006499200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006499201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011239447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017317597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004939853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004939856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AI848264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK005322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK047939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL772242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB647911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC011970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC038005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC044853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC048356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC048358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG082832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY106142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF175139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN664477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO425092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000102659   ⟹   ENSMUSP00000099720
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl277,016,899 - 77,110,936 (-)Ensembl
GRCm38.p6 Ensembl277,186,555 - 77,280,592 (-)Ensembl
RefSeq Acc Id: ENSMUST00000102660   ⟹   ENSMUSP00000099721
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl277,010,684 - 77,096,112 (-)Ensembl
GRCm38.p6 Ensembl277,180,340 - 77,265,768 (-)Ensembl
RefSeq Acc Id: ENSMUST00000139021
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl277,027,231 - 77,110,933 (-)Ensembl
GRCm38.p6 Ensembl277,196,887 - 77,280,589 (-)Ensembl
RefSeq Acc Id: ENSMUST00000145366
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl277,027,229 - 77,029,771 (-)Ensembl
GRCm38.p6 Ensembl277,196,885 - 77,199,427 (-)Ensembl
RefSeq Acc Id: NM_175465   ⟹   NP_780674
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39277,010,684 - 77,110,936 (-)NCBI
GRCm38277,180,340 - 77,280,592 (-)NCBI
MGSCv37277,024,132 - 77,083,146 (-)RGD
Celera278,841,431 - 78,936,600 (-)ENTREZGENE
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006499200   ⟹   XP_006499263
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39277,010,684 - 77,111,160 (-)NCBI
GRCm38277,180,340 - 77,246,344 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006499201   ⟹   XP_006499264
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39277,010,684 - 77,076,688 (-)NCBI
GRCm38277,180,340 - 77,246,344 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011239447   ⟹   XP_011237749
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39277,010,684 - 77,111,160 (-)NCBI
GRCm38277,180,340 - 77,280,591 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017317597   ⟹   XP_017173086
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39277,010,684 - 77,111,160 (-)NCBI
GRCm38277,180,340 - 77,280,605 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030250180   ⟹   XP_030106040
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39277,010,684 - 77,111,160 (-)NCBI
GRCm38277,180,340 - 77,280,627 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030250181   ⟹   XP_030106041
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39277,010,684 - 77,111,160 (-)NCBI
GRCm38277,180,340 - 77,280,600 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036161141   ⟹   XP_036017034
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39277,010,684 - 77,111,160 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004939853
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39277,010,684 - 77,111,160 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004939856
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39277,010,684 - 77,111,160 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_780674   ⟸   NM_175465
- UniProtKB: Q810W3 (UniProtKB/Swiss-Prot),   Q3TLJ1 (UniProtKB/Swiss-Prot),   Q8CI09 (UniProtKB/Swiss-Prot),   Q80UK0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006499263   ⟸   XM_006499200
- Peptide Label: isoform X1
- UniProtKB: Q810W3 (UniProtKB/Swiss-Prot),   Q3TLJ1 (UniProtKB/Swiss-Prot),   Q8CI09 (UniProtKB/Swiss-Prot),   Q80UK0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006499264   ⟸   XM_006499201
- Peptide Label: isoform X1
- UniProtKB: Q810W3 (UniProtKB/Swiss-Prot),   Q3TLJ1 (UniProtKB/Swiss-Prot),   Q8CI09 (UniProtKB/Swiss-Prot),   Q80UK0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011237749   ⟸   XM_011239447
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017173086   ⟸   XM_017317597
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_030106040   ⟸   XM_030250180
- Peptide Label: isoform X1
- UniProtKB: Q810W3 (UniProtKB/Swiss-Prot),   Q80UK0 (UniProtKB/Swiss-Prot),   Q3TLJ1 (UniProtKB/Swiss-Prot),   Q8CI09 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030106041   ⟸   XM_030250181
- Peptide Label: isoform X1
- UniProtKB: Q810W3 (UniProtKB/Swiss-Prot),   Q80UK0 (UniProtKB/Swiss-Prot),   Q3TLJ1 (UniProtKB/Swiss-Prot),   Q8CI09 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000099721   ⟸   ENSMUST00000102660
RefSeq Acc Id: ENSMUSP00000099720   ⟸   ENSMUST00000102659
RefSeq Acc Id: XP_036017034   ⟸   XM_036161141
- Peptide Label: isoform X1
- UniProtKB: Q810W3 (UniProtKB/Swiss-Prot),   Q80UK0 (UniProtKB/Swiss-Prot),   Q3TLJ1 (UniProtKB/Swiss-Prot),   Q8CI09 (UniProtKB/Swiss-Prot)
Protein Domains
CRAL-TRIO

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q80UK0-F1-model_v2 AlphaFold Q80UK0 1-696 view protein structure

Promoters
RGD ID:6832680
Promoter ID:MM_KWN:29838
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:OTTMUST00000031972
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36277,037,501 - 77,038,001 (-)MPROMDB
RGD ID:6877722
Promoter ID:EPDNEW_M2309
Type:initiation region
Name:Sestd1_1
Description:Mus musculus SEC14 and spectrin domains 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38277,280,634 - 77,280,694EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1916262 AgrOrtholog
Ensembl Genes ENSMUSG00000042272 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000102659 ENTREZGENE
  ENSMUST00000102659.2 UniProtKB/Swiss-Prot
  ENSMUST00000102660 ENTREZGENE
  ENSMUST00000102660.8 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.58.60 UniProtKB/Swiss-Prot
InterPro CRAL-TRIO_dom UniProtKB/Swiss-Prot
KEGG Report mmu:228071 UniProtKB/Swiss-Prot
MGD MGI:1916262 ENTREZGENE
NCBI Gene 228071 ENTREZGENE
PANTHER SEC14 DOMAIN AND SPECTRIN REPEAT-CONTAINING PROTEIN 1 UniProtKB/Swiss-Prot
  SEC14 DOMAIN AND SPECTRIN REPEAT-CONTAINING PROTEIN 1 UniProtKB/Swiss-Prot
Pfam CRAL_TRIO_2 UniProtKB/Swiss-Prot
PhenoGen Sestd1 PhenoGen
PROSITE CRAL_TRIO UniProtKB/Swiss-Prot
Superfamily-SCOP Spectrin repeat UniProtKB/Swiss-Prot
UniProt Q3TLJ1 ENTREZGENE
  Q80UK0 ENTREZGENE
  Q810W3 ENTREZGENE
  Q8CI09 ENTREZGENE
  SESD1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q3TLJ1 UniProtKB/Swiss-Prot
  Q810W3 UniProtKB/Swiss-Prot
  Q8CI09 UniProtKB/Swiss-Prot