Tpm2 (tropomyosin 2, beta) - Rat Genome Database

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Gene: Tpm2 (tropomyosin 2, beta) Mus musculus
Analyze
Symbol: Tpm2
Name: tropomyosin 2, beta
RGD ID: 1557001
MGI Page MGI
Description: Predicted to enable actin filament binding activity; protein heterodimerization activity; and protein homodimerization activity. Predicted to be involved in actin filament organization and muscle contraction. Predicted to be located in actin cytoskeleton. Predicted to be part of muscle thin filament tropomyosin. Predicted to be active in actin filament. Is expressed in several structures, including cochlea; lateral plate mesoderm; musculature; retina; and urinary system. Human ortholog(s) of this gene implicated in distal arthrogryposis type 1A and nemaline myopathy 4. Orthologous to human TPM2 (tropomyosin 2).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: beta-tropomyosin; Tpm-; Tpm-2; Tro; Trop-2; tropomyosin beta chain; tropomyosin-2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm35575  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39443,513,726 - 43,523,583 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl443,514,711 - 43,523,765 (-)EnsemblGRCm39 Ensembl
GRCm38443,513,726 - 43,523,583 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl443,514,711 - 43,523,765 (-)EnsemblGRCm38mm10GRCm38
MGSCv37443,527,584 - 43,536,260 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36443,535,812 - 43,544,488 (-)NCBIMGSCv36mm8
Celera443,548,571 - 43,557,214 (-)NCBICelera
Cytogenetic Map4A5NCBI
cM Map423.05NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (EXP)
5-aza-2'-deoxycytidine  (ISO)
5-azacytidine  (ISO)
6-propyl-2-thiouracil  (ISO)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (EXP,ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzatropine  (ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
cadmium dichloride  (ISO)
carbon nanotube  (EXP)
chloropicrin  (ISO)
cisplatin  (ISO)
clofibrate  (EXP)
clotrimazole  (ISO)
clozapine  (ISO)
copper(II) sulfate  (ISO)
Cuprizon  (ISO)
cyclosporin A  (EXP,ISO)
DDT  (ISO)
decabromodiphenyl ether  (ISO)
dexamethasone  (EXP)
dextran sulfate  (EXP)
dibutyl phthalate  (EXP,ISO)
diethyl maleate  (ISO)
diethylstilbestrol  (ISO)
dioxygen  (EXP)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
entinostat  (ISO)
furan  (ISO)
graphene oxide  (EXP)
graphite  (EXP)
hyaluronic acid  (ISO)
hydralazine  (ISO)
hydrogen peroxide  (ISO)
inulin  (EXP)
ivermectin  (ISO)
ketoconazole  (ISO)
lipopolysaccharide  (ISO)
mercury atom  (ISO)
mercury(0)  (ISO)
methimazole  (ISO)
methylmercury chloride  (ISO)
oxaliplatin  (ISO)
ozone  (EXP)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (ISO)
phenobarbital  (EXP,ISO)
phenylephrine  (ISO)
PhIP  (ISO)
pirinixic acid  (EXP,ISO)
potassium dichromate  (ISO)
resveratrol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (EXP,ISO)
sodium dichromate  (ISO)
sodium fluoride  (EXP)
Soman  (ISO)
spermine  (EXP)
sulfadimethoxine  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
valproic acid  (EXP,ISO)
vancomycin  (EXP)
vinclozolin  (ISO)
vitamin E  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
acebutolol pharmacodynamics pathway   (ISO)
adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway  (ISO)
amiodarone pharmacodynamics pathway  (ISO)
amlodipine pharmacodynamics pathway  (ISO)
atenolol pharmacodynamics pathway  (ISO)
betaxolol pharmacodynamics pathway  (ISO)
bisoprolol pharmacodynamics pathway  (ISO)
bupranolol drug pathway  (ISO)
bupranolol pharmacodynamics pathway  (ISO)
carvedilol pharmacodynamics pathway  (ISO)
dilated cardiomyopathy pathway  (IEA)
diltiazem pharmacodynamics pathway  (ISO)
disopyramide pharmacodynamics pathway  (ISO)
dobutamine pharmacodynamics pathway  (ISO)
esmolol pharmacodynamics pathway  (ISO)
flecainde pharmacodynamics pathway  (ISO)
fosphenytoin pharmacodynamics pathway  (ISO)
hypertrophic cardiomyopathy pathway  (IEA)
ibutilide pharmacodynamics pathway  (ISO)
isoprenaline pharmacodynamics pathway  (ISO)
isradipine pharmacodynamics pathway  (ISO)
levobunolol pharmacodynamics pathway  (ISO)
lidocaine pharmacodynamics pathway  (ISO)
metoprolol pharmacodynamics pathway  (ISO)
mexiletine pharmacodynamics pathway  (ISO)
nadolol pharmacodynamics pathway  (ISO)
nebivolol pharmacodynamics pathway  (ISO)
nifedipine pharmacodynamics pathway  (ISO)
nimodipine pharmacodynamics pathway  (ISO)
nisoldipine pharmacodynamics pathway  (ISO)
nitrendipine pharmacodynamics pathway  (ISO)
penbutolol pharmacodynamics pathway  (ISO)
phenytoin pharmacodynamics pathway  (ISO)
pindolol pharmacodynamics pathway  (ISO)
procainamide pharmacodynamics pathway  (ISO)
propranolol pharmacodynamics pathway  (ISO)
quinidine pharmacodynamics pathway  (ISO)
sotalol pharmacodynamics pathway  (ISO)
timolol pharmacodynamics pathway  (ISO)
verapamil pharmacodynamics pathway  (ISO)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Cloning of the murine TROP2 gene: conservation of a PIP2-binding sequence in the cytoplasmic domain of TROP-2. El Sewedy T, etal., Int J Cancer 1998 Jan 19;75(2):324-30.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Large-scale screen for genes controlling mammalian embryogenesis, using high-throughput gene expression analysis in mouse embryos. Neidhardt L, etal., Mech Dev 2000 Nov;98(1-2):77-94.
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1601870   PMID:1631061   PMID:1733968   PMID:2461223   PMID:3244365   PMID:7522680   PMID:7613033   PMID:7684495   PMID:8530495   PMID:8557685   PMID:8618961   PMID:8760295  
PMID:9400381   PMID:9589353   PMID:10349636   PMID:10833443   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11356630   PMID:11437454   PMID:11563548   PMID:11591653   PMID:11752298  
PMID:12477932   PMID:12819125   PMID:15226265   PMID:15226823   PMID:15513965   PMID:16141072   PMID:16141073   PMID:16494860   PMID:16501024   PMID:16602821   PMID:16765662   PMID:17416600  
PMID:18076376   PMID:18287559   PMID:18674650   PMID:19118250   PMID:19209811   PMID:19209820   PMID:20487527   PMID:21267068   PMID:21386911   PMID:21873635   PMID:22282597   PMID:23563569  
PMID:23783522   PMID:23893297   PMID:24614889   PMID:24703692   PMID:25369766   PMID:26015409   PMID:26989172   PMID:27976512   PMID:29510160   PMID:29518331   PMID:30008230   PMID:30409884  
PMID:30833597   PMID:31162944   PMID:32325033   PMID:32376900   PMID:35103284   PMID:35472321   PMID:36102257  


Genomics

Comparative Map Data
Tpm2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39443,513,726 - 43,523,583 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl443,514,711 - 43,523,765 (-)EnsemblGRCm39 Ensembl
GRCm38443,513,726 - 43,523,583 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl443,514,711 - 43,523,765 (-)EnsemblGRCm38mm10GRCm38
MGSCv37443,527,584 - 43,536,260 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36443,535,812 - 43,544,488 (-)NCBIMGSCv36mm8
Celera443,548,571 - 43,557,214 (-)NCBICelera
Cytogenetic Map4A5NCBI
cM Map423.05NCBI
TPM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38935,681,993 - 35,690,056 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl935,681,992 - 35,690,056 (-)EnsemblGRCh38hg38GRCh38
GRCh37935,681,990 - 35,690,053 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36935,671,990 - 35,680,053 (-)NCBINCBI36Build 36hg18NCBI36
Celera935,615,536 - 35,623,601 (-)NCBICelera
Cytogenetic Map9p13.3NCBI
HuRef935,637,598 - 35,645,663 (-)NCBIHuRef
CHM1_1935,681,818 - 35,689,882 (-)NCBICHM1_1
T2T-CHM13v2.0935,702,645 - 35,710,710 (-)NCBIT2T-CHM13v2.0
Tpm2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8562,566,712 - 62,576,066 (-)NCBIGRCr8
mRatBN7.2557,770,919 - 57,780,278 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl557,770,864 - 57,779,992 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx559,750,807 - 59,759,817 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0561,569,623 - 61,578,633 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0561,540,839 - 61,549,996 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0559,016,616 - 59,025,971 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl559,016,622 - 59,025,631 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0563,541,215 - 63,550,146 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4559,994,101 - 60,003,261 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera556,351,476 - 56,360,486 (-)NCBICelera
Cytogenetic Map5q22NCBI
Tpm2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955472611,028 - 617,821 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955472611,079 - 617,823 (+)NCBIChiLan1.0ChiLan1.0
TPM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21188,896,692 - 88,905,357 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1988,903,269 - 88,911,296 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0935,533,982 - 35,542,033 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1936,336,307 - 36,345,394 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl936,336,307 - 36,345,394 (-)Ensemblpanpan1.1panPan2
TPM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11152,212,372 - 52,219,947 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1152,212,401 - 52,219,923 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1150,779,956 - 50,787,531 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01153,277,326 - 53,284,901 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1153,277,355 - 53,284,866 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11151,821,901 - 51,829,478 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01151,805,386 - 51,812,960 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01152,507,526 - 52,515,101 (-)NCBIUU_Cfam_GSD_1.0
Tpm2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947167,132,139 - 167,140,168 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365243,679,560 - 3,688,308 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365243,679,719 - 3,687,828 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TPM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1236,402,251 - 236,410,905 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11236,402,249 - 236,410,390 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21264,127,284 - 264,135,301 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap1q23-q27NCBI
TPM2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11244,912,250 - 44,920,615 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1244,912,223 - 44,919,456 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603842,015,821 - 42,025,459 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tpm2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248685,101,090 - 5,109,820 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248685,101,713 - 5,109,560 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tpm2
216 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2300
Count of miRNA genes:660
Interacting mature miRNAs:824
Transcripts:ENSMUST00000030184, ENSMUST00000107913, ENSMUST00000107914, ENSMUST00000133355, ENSMUST00000150262, ENSMUST00000150592
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
10401905Sicd3_mseizure-induced cell death 3 (mouse)Not determined4939552543760862Mouse
10401115Pgia35_mproteoglycan induced arthritis 35 (mouse)Not determined41256237746562509Mouse
12880405Jcdq1_mjoint cartilage degeneration QTL 1 (mouse)41256237746562509Mouse
4142318Lyr2_mlymphoma resistance 2 (mouse)Not determined1401045763283678Mouse
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117072206Mouse
1301203Alcp8_malcohol preference locus 8 (mouse)Not determined41739516051395290Mouse
1301237Alcp7_malcohol preference locus 7 (mouse)Not determined41739516051395290Mouse
4141555Nbwa2_mNZB and NZW autoimmunity 2 (mouse)Not determined41789251551892635Mouse
4141911W6q15_mweight 6 weeks QTL 15 (mouse)Not determined1789261688982216Mouse
39128211Lwq22_mliver weight QTL 22 (mouse)41789261688982216Mouse
1357453Kidq4_mkidney weight QTL 4 (mouse)Not determined41789261688982216Mouse
25440481Moaq1_mmodifier of alien QTL 1 (mouse)41950000046000000Mouse
1302058Hrtfm3_mheart failure modifier 3 (mouse)Not determined42211194456112145Mouse
1300769Pcyts2_mplasmacytoma susceptibility 2 (mouse)Not determined42211194456112145Mouse
1301437Scon1_msucrose consumption 1 (mouse)Not determined42237344856373612Mouse
1302075Bdln6_mbody length 6 (mouse)Not determined42237344856373612Mouse
1301697Sluc18_msusceptibility to lung cancer 18 (mouse)Not determined42237344856373612Mouse
1302184Aaom1_mautoimmune aoritis in MRL mice 1 (mouse)Not determined42432229946332776Mouse
1300574Im2_mimmunoregulatory 2 (mouse)Not determined42807768262077816Mouse
1301586Stheal3_msoft tissue heal 3 (mouse)Not determined42865844262658566Mouse
1357877Synch1_msynechia 1 (mouse)Not determined42870992562710107Mouse
1301990Arvm1_mautoimmune renal vasculitis 1 (mouse)Not determined42933264663332776Mouse
4142290Ssrq9_mstress response QTL 9 (mouse)Not determined3439516046332776Mouse
1301792Hdlq10_mHDL QTL 10 (mouse)Not determined43585970769859853Mouse
1300977Mopkd1_mmodifier of polycystic kidney disease progression 1 (mouse)Not determined43655083970550967Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000128993793Mouse
1302116Bbaa1_mB.burgdorferi-associated arthritis 1 (mouse)Not determined43825093072251078Mouse
10412178Habiir2_mhyperoxic acute lung injury imprinted region 2 (mouse)Not determined43945212663283678Mouse
1301786Bpq3_mblood pressure QTL 3 (mouse)Not determined44240224076402381Mouse
27226724Tibw2_mtibia width 2, proximal, 10 week (mouse)443000000108357197Mouse

Markers in Region
M81086  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38443,515,589 - 43,515,770UniSTSGRCm38
MGSCv37443,528,461 - 43,528,642UniSTSGRCm37
Celera443,549,448 - 43,549,629UniSTS
Cytogenetic Map4B1UniSTS
Whitehead_YAC4 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001277875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001277876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006537780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA208641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL732506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC014809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY439632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY786644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CV560790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV049735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M81086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M87635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X12650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X58381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000030184   ⟹   ENSMUSP00000030184
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl443,514,711 - 43,523,464 (-)Ensembl
GRCm38.p6 Ensembl443,514,711 - 43,523,464 (-)Ensembl
RefSeq Acc Id: ENSMUST00000107913   ⟹   ENSMUSP00000103546
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl443,514,712 - 43,523,388 (-)Ensembl
GRCm38.p6 Ensembl443,514,712 - 43,523,388 (-)Ensembl
RefSeq Acc Id: ENSMUST00000107914   ⟹   ENSMUSP00000103547
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl443,514,711 - 43,523,595 (-)Ensembl
GRCm38.p6 Ensembl443,514,711 - 43,523,595 (-)Ensembl
RefSeq Acc Id: ENSMUST00000133355
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl443,515,682 - 43,519,669 (-)Ensembl
GRCm38.p6 Ensembl443,515,682 - 43,519,669 (-)Ensembl
RefSeq Acc Id: ENSMUST00000150262
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl443,514,711 - 43,523,438 (-)Ensembl
GRCm38.p6 Ensembl443,514,711 - 43,523,438 (-)Ensembl
RefSeq Acc Id: ENSMUST00000150592   ⟹   ENSMUSP00000119908
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl443,519,668 - 43,523,765 (-)Ensembl
GRCm38.p6 Ensembl443,519,668 - 43,523,765 (-)Ensembl
RefSeq Acc Id: NM_001277875   ⟹   NP_001264804
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39443,513,726 - 43,523,554 (-)NCBI
GRCm38443,513,726 - 43,523,554 (-)NCBI
Celera443,547,585 - 43,557,380 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001277876   ⟹   NP_001264805
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39443,513,726 - 43,523,554 (-)NCBI
GRCm38443,513,726 - 43,523,554 (-)NCBI
Celera443,547,585 - 43,557,380 (-)NCBI
Sequence:
RefSeq Acc Id: NM_009416   ⟹   NP_033442
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39443,513,726 - 43,523,554 (-)NCBI
GRCm38443,513,726 - 43,523,554 (-)NCBI
MGSCv37443,527,584 - 43,536,260 (-)RGD
Celera443,547,585 - 43,557,380 (-)NCBI
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006537780   ⟹   XP_006537843
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39443,515,672 - 43,523,583 (-)NCBI
GRCm38443,515,672 - 43,523,583 (-)NCBI
Sequence:
RefSeq Acc Id: NP_033442   ⟸   NM_009416
- Peptide Label: isoform Tpm2.2st
- UniProtKB: P46901 (UniProtKB/Swiss-Prot),   P58774 (UniProtKB/Swiss-Prot),   Q9D1R6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001264804   ⟸   NM_001277875
- Peptide Label: isoform Tpm2.3
- UniProtKB: Q61344 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001264805   ⟸   NM_001277876
- Peptide Label: isoform Tpm2.1sm/cy
- UniProtKB: Q6PJ18 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006537843   ⟸   XM_006537780
- Peptide Label: isoform X1
- UniProtKB: A2AIM4 (UniProtKB/TrEMBL),   Q9D1R6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000119908   ⟸   ENSMUST00000150592
RefSeq Acc Id: ENSMUSP00000103547   ⟸   ENSMUST00000107914
RefSeq Acc Id: ENSMUSP00000103546   ⟸   ENSMUST00000107913
RefSeq Acc Id: ENSMUSP00000030184   ⟸   ENSMUST00000030184

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P58774-F1-model_v2 AlphaFold P58774 1-284 view protein structure

Promoters
RGD ID:6883228
Promoter ID:EPDNEW_M5065
Type:initiation region
Name:Tpm2_1
Description:Mus musculus tropomyosin 2, beta , transcript variant Tpm2.1,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38443,523,464 - 43,523,524EPDNEW
RGD ID:6836561
Promoter ID:MM_KWN:37351
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:MEF_B4,   MEF_B6
Transcripts:OTTMUST00000016121
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36443,532,281 - 43,533,002 (-)MPROMDB
RGD ID:6836560
Promoter ID:MM_KWN:37352
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   ES_Cell,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000030184,   ENSMUST00000034926,   ENSMUST00000107913,   OTTMUST00000016117,   OTTMUST00000016119,   OTTMUST00000016120,   UC008SQB.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36443,536,221 - 43,537,402 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:98810 AgrOrtholog
Ensembl Genes ENSMUSG00000028464 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000030184 ENTREZGENE
  ENSMUST00000030184.12 UniProtKB/TrEMBL
  ENSMUST00000107913 ENTREZGENE
  ENSMUST00000107913.10 UniProtKB/Swiss-Prot
  ENSMUST00000107914 ENTREZGENE
  ENSMUST00000107914.10 UniProtKB/Swiss-Prot
  ENSMUST00000150592.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.170 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.5.340 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.5.370 UniProtKB/TrEMBL
InterPro Tropomyosin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  XRCC4-like_C UniProtKB/TrEMBL
KEGG Report mmu:22004 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:98810 ENTREZGENE
NCBI Gene 22004 ENTREZGENE
PANTHER TROPOMYOSIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TROPOMYOSIN BETA CHAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Tropomyosin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tpm2 PhenoGen
PRINTS TROPOMYOSIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE TROPOMYOSIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Tropomyosin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2AIM4 ENTREZGENE, UniProtKB/TrEMBL
  A2AIM5_MOUSE UniProtKB/TrEMBL
  P46901 ENTREZGENE
  P58774 ENTREZGENE
  Q61344 ENTREZGENE, UniProtKB/TrEMBL
  Q6PJ18 ENTREZGENE, UniProtKB/TrEMBL
  Q91VH3_MOUSE UniProtKB/TrEMBL
  Q9D1R6 ENTREZGENE, UniProtKB/TrEMBL
  TPM2_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary P02560 UniProtKB/Swiss-Prot
  P46901 UniProtKB/Swiss-Prot