Efcab11 (EF-hand calcium binding domain 11)

Gene: Efcab11 (EF-hand calcium binding domain 11) Mus musculus

Analyze

Symbol:

Efcab11

Name:

EF-hand calcium binding domain 11

RGD ID:

1556951

MGI Page

MGI

Description:

Predicted to enable calcium ion binding activity. Is expressed in central nervous system; lung; and reproductive system. Orthologous to human EFCAB11 (EF-hand calcium binding domain 11).

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

2610021K21Rik; 2610110A13Rik; EF-hand calcium-binding domain-containing protein 11; EF-hand domain-containing protein C14orf143 homolog

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	99,683,790 - 99,849,701 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	99,659,304 - 99,850,698 (-)	Ensembl		GRCm39 Ensembl
GRCm38	12	99,692,195 - 99,884,442 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	99,693,045 - 99,884,439 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	100,955,741 - 101,121,652 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	100,118,581 - 100,284,492 (-)	NCBI		MGSCv36	mm8
Celera	12	100,940,390 - 101,105,944 (-)	NCBI		Celera
Cytogenetic Map	12	E	NCBI
cM Map	12	50.25	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1-naphthyl isothiocyanate (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (EXP)

2,2',5,5'-tetrachlorobiphenyl (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

3,3',4,4',5-pentachlorobiphenyl (ISO)

acetamide (ISO)

aflatoxin B1 (ISO)

atrazine (ISO)

azathioprine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

C60 fullerene (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dicrotophos (ISO)

epoxiconazole (EXP)

fulvestrant (ISO)

lidocaine (ISO)

methoxychlor (ISO)

methyl methanesulfonate (ISO)

N-Nitrosopyrrolidine (ISO)

O-methyleugenol (ISO)

ozone (EXP)

paracetamol (ISO)

PCB138 (EXP)

pentanal (ISO)

propanal (ISO)

quercetin (ISO)

silicon dioxide (ISO)

sodium arsenite (EXP)

sunitinib (ISO)

temozolomide (ISO)

trovafloxacin (EXP)

tungsten (EXP)

vinclozolin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

calcium ion binding (IBA)

metal ion binding (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Functional annotation of a full-length mouse cDNA collection.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2.	MGDs mouse GO annotations	MGD data from the GO Consortium
3.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:12477932	PMID:14610273	PMID:16141072	PMID:16141073	PMID:18799693	PMID:21873635	PMID:24194600	PMID:27626380

Genomics

Comparative Map Data

Efcab11
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	99,683,790 - 99,849,701 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	99,659,304 - 99,850,698 (-)	Ensembl		GRCm39 Ensembl
GRCm38	12	99,692,195 - 99,884,442 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	99,693,045 - 99,884,439 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	100,955,741 - 101,121,652 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	100,118,581 - 100,284,492 (-)	NCBI		MGSCv36	mm8
Celera	12	100,940,390 - 101,105,944 (-)	NCBI		Celera
Cytogenetic Map	12	E	NCBI
cM Map	12	50.25	NCBI

EFCAB11
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	89,794,669 - 89,954,777 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	89,794,669 - 89,954,777 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	90,261,013 - 90,421,121 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	89,333,222 - 89,490,842 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	89,331,093 - 89,490,786	NCBI
Celera	14	70,310,740 - 70,468,290 (-)	NCBI		Celera
Cytogenetic Map	14	q32.11	NCBI
HuRef	14	70,437,426 - 70,595,017 (-)	NCBI		HuRef
CHM1_1	14	90,201,442 - 90,358,992 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	84,018,846 - 84,178,973 (-)	NCBI		T2T-CHM13v2.0

Efcab11
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	124,738,531 - 124,892,623 (-)	NCBI		GRCr8
mRatBN7.2	6	119,008,908 - 119,162,994 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	119,008,919 - 119,162,046 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	119,155,004 - 119,313,090 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	119,451,823 - 119,609,895 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	118,786,680 - 118,944,754 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	123,742,971 - 123,894,714 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	123,743,064 - 123,894,826 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	132,968,485 - 133,119,982 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	123,936,251 - 124,094,113 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	6	116,542,993 - 116,695,699 (-)	NCBI		Celera
Cytogenetic Map	6	q32	NCBI

Efcab11
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955438	12,267,722 - 12,420,869 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955438	12,269,610 - 12,420,775 (-)	NCBI	ChiLan1.0	ChiLan1.0

EFCAB11
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	90,933,594 - 91,099,591 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	90,159,438 - 90,316,097 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	70,414,351 - 70,573,039 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	89,766,772 - 89,925,341 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	89,769,013 - 89,925,224 (-)	Ensembl	panpan1.1		panPan2

EFCAB11
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	60,876,210 - 61,021,581 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	60,876,646 - 61,023,977 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	60,456,854 - 60,601,254 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	61,148,335 - 61,293,327 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	61,148,767 - 61,295,778 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	60,830,096 - 60,975,099 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	60,878,814 - 61,023,887 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	61,206,729 - 61,351,908 (-)	NCBI		UU_Cfam_GSD_1.0

Efcab11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	14,840,745 - 14,994,771 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936488	17,074,126 - 17,228,263 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936488	17,075,493 - 17,228,234 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

EFCAB11
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	111,600,717 - 111,766,205 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	111,574,771 - 111,766,267 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	118,137,693 - 118,330,930 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

EFCAB11
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	67,507,804 - 67,672,991 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	67,507,047 - 67,671,627 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666053	54,817,472 - 54,975,455 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Efcab11
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	12,416,030 - 12,601,310 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624734	12,414,914 - 12,601,221 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Efcab11
5788 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	475
Count of miRNA genes:	326
Interacting mature miRNAs:	385
Transcripts:	ENSMUST00000046485
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4142002	Tbqt3_m	tibia bone quality traits 3 (mouse)			Not determined		12	35285496	109936243	Mouse
14746976	Manh73_m	mandible shape 73 (mouse)					12	65857131	99857131	Mouse
27226793	Feml10_m	femur length 10, 5 week (mouse)					12	68346774	113363620	Mouse
4141738	Tgq23_m	triglyceride QTL 23 (mouse)			Not determined			72112877	106112877	Mouse
1301926	Adip6_m	adiposity 6 (mouse)			Not determined		12	73887422	107887526	Mouse
1301689	Skull18_m	skull morphology 18 (mouse)			Not determined		12	73887422	107887526	Mouse
13524842	Ppiq10a_m	prepulse inhibition QTL 10a (mouse)					12	77512220	111512220	Mouse
4141610	Tailaq1_m	tail length adjusted QTL 1 (mouse)			Not determined			80956708	113383533	Mouse
4142401	Egq10_m	early growth QTL 10 (mouse)			Not determined			80956708	113383533	Mouse
4141335	W6q10_m	weight 6 weeks QTL 10 (mouse)			Not determined			80956708	113383533	Mouse
39128213	Lwq23_m	liver weight QTL 10 (mouse)					12	80956708	113383533	Mouse
13524849	Ppiq11a_m	prepulse inhibition QTL 11a (mouse)					12	80989143	114989143	Mouse
25823169	Hrsq8_m	host response to SARS QTL 8, log titer (mouse)					12	81696245	108495368	Mouse
13524846	Ppiq11_m	prepulse inhibition QTL 11 (mouse)					12	82666396	116666396	Mouse
1301492	Dbsty3_m	diabesity 3 (mouse)			Not determined		12	83532075	117532224	Mouse
1301879	Insq10_m	insulin QTL 10 (mouse)			Not determined		12	83532075	117532224	Mouse
1300883	Ath21_m	atherosclerosis 21 (mouse)			Not determined		12	85961579	119961683	Mouse
10412156	Nociq3_m	nociceptive sensitivity inflammatory QTL 3 (mouse)			Not determined		12	86396075	114831653	Mouse
4142007	Chlq17_m	circulating hormone level QTL 17 (mouse)			Not determined		12	88052874	120092757	Mouse
1300545	Lifespan3_m	life span 3 (mouse)			Not determined		12	88052874	120092757	Mouse
1301308	Prdt4_m	prion disease incubation time 4 (mouse)			Not determined		12	88308354	120092757	Mouse
5491194	Mobq3_m	multigenic obesity QTL 3 (mouse)			Not determined		12	89664071	120092757	Mouse
1301836	Heal5_m	wound healing/regeneration 5 (mouse)			Not determined		12	89939031	120092757	Mouse
1301922	Bbaa6_m	B.burgdorferi-associated arthritis 6 (mouse)			Not determined		12	90308268	120092757	Mouse
4142402	Ccs1_m	colon cancer susceptibility 1 (mouse)			Not determined			90887422	100023109	Mouse
12910790	Pwgrq7_m	pre-weaning growth rate QTL 7 (mouse)					12	90937367	108645308	Mouse
10402491	Dipa4_m	drug induced psychomotor activation 4 (mouse)			Not determined		12	91222515	120092757	Mouse
10412192	Bbaa27_m	B.burgdorferi-associated arthritis 27 (mouse)			Not determined		12	91254220	107308393	Mouse
12910532	Nrq10a_m	noise-induced hearing loss resistant QTL 10a (mouse)					12	92750025	120092757	Mouse
12910533	Nrq10_m	noise-induced hearing loss resistant QTL 10 (mouse)					12	92750025	120092757	Mouse
1357463	Vtbt14_m	vertebral trabecular bone trait 14 (mouse)			Not determined		12	92936097	120092757	Mouse
1300973	Abmm_m	antibody mediated myocarditis (mouse)			Not determined		12	93264461	120092757	Mouse
11039526	Ccc1_m	colitis susceptibility in the Collaborative Cross 1 (mouse)					12	93528334	111028223	Mouse
1302177	Dps2_m	delta power in slow-wave sleep 2 (mouse)			Not determined		12	94146064	120092757	Mouse
1302138	Im6_m	immunoregulatory 6 (mouse)			Not determined		12	96860337	120092757	Mouse
1301269	Sluc12_m	susceptibility to lung cancer 12 (mouse)			Not determined		12	96860337	120092757	Mouse

Markers in Region

C80678

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	12	99,747,284 - 99,747,379	UniSTS	GRCm38
MGSCv37	12	100,985,494 - 100,985,589	UniSTS	GRCm37
Celera	12	100,970,166 - 100,970,261	UniSTS
Cytogenetic Map	12	F1	UniSTS

UniSTS:236922

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	12	99,717,848 - 99,718,069	UniSTS	GRCm38
MGSCv37	12	100,956,058 - 100,956,279	UniSTS	GRCm37
Celera	12	100,940,707 - 100,940,928	UniSTS
Cytogenetic Map	12	F1	UniSTS

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_030172	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC155266	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC160931	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK011507	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK011836	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK035051	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK132473	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC049109	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466549	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000046485 ⟹ ENSMUSP00000044808

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	99,683,791 - 99,849,701 (-)	Ensembl
GRCm38.p6 Ensembl	12	99,717,532 - 99,883,442 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000220875 ⟹ ENSMUSP00000152256

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	99,684,981 - 99,849,116 (-)	Ensembl
GRCm38.p6 Ensembl	12	99,718,722 - 99,882,857 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000221197

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	99,844,594 - 99,850,698 (-)	Ensembl
GRCm38.p6 Ensembl	12	99,878,335 - 99,884,439 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000221801

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	99,841,849 - 99,849,762 (-)	Ensembl
GRCm38.p6 Ensembl	12	99,875,590 - 99,883,503 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000221929 ⟹ ENSMUSP00000152099

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	99,659,304 - 99,849,682 (-)	Ensembl
GRCm38.p6 Ensembl	12	99,693,045 - 99,883,423 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000223108

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	99,842,597 - 99,849,680 (-)	Ensembl
GRCm38.p6 Ensembl	12	99,876,338 - 99,883,421 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000223114 ⟹ ENSMUSP00000152734

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	99,684,935 - 99,850,671 (-)	Ensembl
GRCm38.p6 Ensembl	12	99,718,676 - 99,884,412 (-)	Ensembl

RefSeq Acc Id:

NM_030172 ⟹ NP_084448

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	12	99,683,790 - 99,849,701 (-)	NCBI
GRCm38	12	99,717,531 - 99,883,442 (-)	NCBI
MGSCv37	12	100,955,741 - 101,121,652 (-)	RGD
Celera	12	100,940,390 - 101,105,944 (-)	RGD
cM Map	12		ENTREZGENE

Sequence:

show sequence

AGCGGTGGTGGGCGAGGCCGCAGTGGCTGGTCTGTGTTCTCGCTGCAGCGGAGGAGACGCCTGG
CTTGGTCTCCGTGTCGGTGGCGATGTTCTTGTCAGAGGCAGGCGCAAGGCCCCGAGCAGGCGAA
GCCAGCGCCTCAGAACGCAGGAAATGGGTGAAAGTATTTAAAGCATGCGATGAAGACAACAAAG
GCTACCTAAGCCGAGAGGACTTTAAGGTTGCGATTGTAATGCTGTTTGGGTACAAACCCTCCAA
GATAGAAGCGGATGCTGTGATGTCTTCAGTAAATCCCAACACTTCTGGTGTTTCACTTGAGGGG
TTTTTGAGTGCCGTAAAGAGAAAGAAGGAAGCGCGACTCTATCGGAATGAGATAAGGCAGATCT
TCACAGCTTTCGACGTGCACTATCGTGGATTTTTAACTCTAGAAGATTTCAAGAGGGCGTTTAG
TCGAGTGGCTCCCAAGCTACCAGCGAGGACAGTGCTGGAGGTGTTCAGGGAGGCAGATCAAGAC
TCAGATGGTCACGTCAGCTTCCGAGACTTTGAATACGCCATGAACCATGGGCAGTCAAAATGAG
CCGGGTGCTTGTGAACTACTTGGACAGCTCGATGGATTGTAATCTAGTTGAAGGTCTCACAGAC
CTCAATCTAGGAAGGGTATGAAACTGTGTACTTGTGAGTAAACTCTTAGTTAGAGCTTTTGAAT
GCTGATATTGGACCTAGAGATGGGAATCTCCTGTGTGTGTCTCCAGCAGCCCTGAGTCAGGCTG
CTACTGCTGGCCCTGCCACCCAGTGGGTTTGGAGTTTTTCCCCCTCTCTGCTCTTGTCAGCTTT
CTGTCCTCTATCCTGTGGGTTGGAGGCTCTGCTAACTCCGCATGAGTCCCTCACTCTTGTCAGC
TCCGGGAAAAGTTACCTTTGCTCTGCTAGCAGTGTCATTGCCATTCACTTGCTCCACCTCGGCT
GAACATCAAGCTTACTGTGTCCAAGCAATGAGCTAGTGCTAGGAAAACAAAGACTCTGAGATGA
TGCGCCTGGGGTACAGAGAGGTGCACAGGGCACCTGTGTACAAAGCCTAGGAGGAAGCAGCTCT
GGCTAGGCCATCAGCCATTCTTTATACAGAGAAGTCCAGGATGTAACTGGGGTCTTAATGGGCA
GAAGGGTGTGGTCTTTGGTTCCCTTTAGGATAGCCTGGACCTGAGCCTGGGCTTCTTTCTTCAG
AGAAGCTAGCTAGAGAAGCTGGCCGGCAGCCCTCTGCCACACACTTCTGGTTCTAGGTAGTTCT
GCCCTGGACCTGAAGCTCCAGCCATCCTAGAGTTAGGAGTCTCCACTCCCTGCCATGCCCCTGG
GCGCCAGTGATCACATCAAGTCACAACATACAGCTCAGCATCTACTAAAGATAACTCTGAAATA
CCAACATTGTCCTTGTAAGTGTTTCACAACATTAACATTTGTGGTATAATTAATGCAATTTATG
TTTTTAAAGTGTTAAACATTAAACGATCAAGTAGAAATATAAATTTGTATAGCCAACATTCAAC
AAGCTTCATGCTCATATAAATTATTAGTAGATAGCCTTAAGAAAAATAAAGTTTTTAGCTATGC
TAAACCAGAGGAACCTAAGAGATGGGATAACTAAATGTAATTTGACTGAAATGTAATTTGGTCT
CCTAACGGGCCCCTAGGGACCATACGGTAGAGATGAACCAAGCCTGGACTTCCTCTGCTACTTG
TGATAGTGTGGGAGACTGGGTGATGGATAGATAGGATTTCTACTGTTTTCATGATTTTTCTATA
AATCTAAAATTATCCTCAAACGGAGTTTGTTAAAAATTAAAGGCTTAGTCAAACATTCATAAAC
TAAATGAAGAAGCAATGAAAATAATTTCTCAACATGAATGAAATATTATTTCAGAGGCAGAAAT
GAATTACTGGTATCATTGAGAAGTGTGTATGACTTTGTGCACAGTAGTCCAGTTTCTGACTTTG
TTCAGCAAGTGTTTTCATTATAAGACAAACCAAATCATTGATCCTGATCTCAAAATATTAAAGA
GATATTTTTGATTTCTTAAAT

hide sequence

Protein Sequences


Protein RefSeqs	NP_084448	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH49109	(Get FASTA)	NCBI Sequence Viewer
	BAB27665	(Get FASTA)	NCBI Sequence Viewer
	BAB27869	(Get FASTA)	NCBI Sequence Viewer
	BAC28925	(Get FASTA)	NCBI Sequence Viewer
	EDL18911	(Get FASTA)	NCBI Sequence Viewer
	EDL18912	(Get FASTA)	NCBI Sequence Viewer
	EDL18913	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000044808
	ENSMUSP00000044808.4
	ENSMUSP00000152099.2
	ENSMUSP00000152256.2
	ENSMUSP00000152734.2
GenBank Protein	Q9D0E5	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_084448 ⟸ NM_030172
- UniProtKB:	Q9D041 (UniProtKB/Swiss-Prot), Q9D0E5 (UniProtKB/Swiss-Prot), A0A1Y7VKR2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFLSEAGARPRAGEASASERRKWVKVFKACDEDNKGYLSREDFKVAIVMLFGYKPSKIEADAVM SSVNPNTSGVSLEGFLSAVKRKKEARLYRNEIRQIFTAFDVHYRGFLTLEDFKRAFSRVAPKLP ARTVLEVFREADQDSDGHVSFRDFEYAMNHGQSK hide sequence

RefSeq Acc Id:

ENSMUSP00000044808 ⟸ ENSMUST00000046485

RefSeq Acc Id:

ENSMUSP00000152734 ⟸ ENSMUST00000223114

RefSeq Acc Id:

ENSMUSP00000152099 ⟸ ENSMUST00000221929

RefSeq Acc Id:

ENSMUSP00000152256 ⟸ ENSMUST00000220875

Protein Domains

EF-hand

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9D0E5-F1-model_v2	AlphaFold	Q9D0E5	1-162	view protein structure

Promoters

RGD ID:

8678986

Promoter ID:

EPDNEW_M17524

Type:

multiple initiation site

Name:

Efcab11_1

Description:

Mus musculus EF-hand calcium binding domain 11 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	12	99,883,421 - 99,883,481	EPDNEW

RGD ID:

6822553

Promoter ID:

MM_KWN:12464

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day1, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, ES_Cell, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

NM_030172, UC007OSB.1, UC007OSD.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	12	101,121,556 - 101,122,457 (-)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1926017	AgrOrtholog
Ensembl Genes	ENSMUSG00000021176	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000046485	ENTREZGENE
	ENSMUST00000046485.5	UniProtKB/Swiss-Prot
	ENSMUST00000220875.2	UniProtKB/TrEMBL
	ENSMUST00000221929.2	UniProtKB/TrEMBL
	ENSMUST00000223114.2	UniProtKB/Swiss-Prot
Gene3D-CATH	EF-hand	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	EF-hand-dom_pair	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	EF_Hand_1_Ca_BS	UniProtKB/Swiss-Prot
	EF_hand_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:78767	UniProtKB/Swiss-Prot
MGD	MGI:1926017	ENTREZGENE
NCBI Gene	78767	ENTREZGENE
PANTHER	CALCIUM BINDING PROTEIN	UniProtKB/Swiss-Prot
	EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 11	UniProtKB/Swiss-Prot
Pfam	EF-hand_7	UniProtKB/Swiss-Prot
	EF-hand_8	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Efcab11	PhenoGen
PROSITE	EF_HAND_1	UniProtKB/Swiss-Prot
	EF_HAND_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	EFh	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF47473	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A1Y7VKR2	ENTREZGENE, UniProtKB/TrEMBL
	A0A1Y7VLL7_MOUSE	UniProtKB/TrEMBL
	EFC11_MOUSE	UniProtKB/Swiss-Prot
	Q9D041	ENTREZGENE
	Q9D0E5	ENTREZGENE
UniProt Secondary	Q9D041	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-09-19	Efcab11	EF-hand calcium binding domain 11	2610021K21Rik	RIKEN cDNA 2610021K21 gene	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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