Rpl39l (ribosomal protein L39-like) - Rat Genome Database

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Gene: Rpl39l (ribosomal protein L39-like) Mus musculus
Analyze
Symbol: Rpl39l
Name: ribosomal protein L39-like
RGD ID: 1556943
MGI Page MGI
Description: A structural constituent of ribosome. Involved in cytoplasmic translation and spermatogenesis. Part of cytosolic large ribosomal subunit. Is expressed in 2-cell stage embryo; 4-cell stage embryo; forelimb; and humerus cartilage condensation. Orthologous to human RPL39L (ribosomal protein L39 like).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4930517K11Rik; 60S ribosomal protein L39-like; large ribosomal subunit protein eL39-like; ribosomal protein L39-like protein
RGD Orthologs
Human
Rat
Bonobo
Dog
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39169,988,061 - 9,992,775 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl169,988,090 - 9,992,775 (+)EnsemblGRCm39 Ensembl
GRCm381610,170,197 - 10,174,911 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1610,170,226 - 10,174,911 (+)EnsemblGRCm38mm10GRCm38
MGSCv371610,170,321 - 10,175,004 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361610,083,806 - 10,088,489 (+)NCBIMGSCv36mm8
Celera1610,803,453 - 10,808,136 (+)NCBICelera
Cytogenetic Map16A1NCBI
cM Map165.49NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:16829211   PMID:17660561   PMID:18287559   PMID:21731673  
PMID:21873635   PMID:24452241   PMID:34428590   PMID:34825148   PMID:36517592  


Genomics

Comparative Map Data
Rpl39l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39169,988,061 - 9,992,775 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl169,988,090 - 9,992,775 (+)EnsemblGRCm39 Ensembl
GRCm381610,170,197 - 10,174,911 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1610,170,226 - 10,174,911 (+)EnsemblGRCm38mm10GRCm38
MGSCv371610,170,321 - 10,175,004 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361610,083,806 - 10,088,489 (+)NCBIMGSCv36mm8
Celera1610,803,453 - 10,808,136 (+)NCBICelera
Cytogenetic Map16A1NCBI
cM Map165.49NCBI
RPL39L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383187,120,948 - 187,139,496 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3187,120,948 - 187,180,908 (-)EnsemblGRCh38hg38GRCh38
GRCh373186,838,736 - 186,857,284 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363188,321,435 - 188,339,957 (-)NCBINCBI36Build 36hg18NCBI36
Build 343188,321,442 - 188,339,965NCBI
Celera3185,270,573 - 185,289,095 (-)NCBICelera
Cytogenetic Map3q27.3NCBI
HuRef3184,243,217 - 184,261,742 (-)NCBIHuRef
CHM1_13186,802,108 - 186,820,629 (-)NCBICHM1_1
T2T-CHM13v2.03189,938,378 - 189,956,928 (-)NCBIT2T-CHM13v2.0
Rpl39l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8105,962,506 - 5,966,621 (-)NCBIGRCr8
mRatBN7.2105,455,712 - 5,459,828 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl105,454,559 - 5,462,029 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1010,151,694 - 10,155,820 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0109,673,153 - 9,677,269 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0105,311,187 - 5,315,326 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0105,529,580 - 5,533,695 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl105,529,589 - 5,533,695 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0104,350,262 - 4,354,377 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4105,409,437 - 5,413,552 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera104,471,705 - 4,475,820 (-)NCBICelera
Cytogenetic Map10q11NCBI
RPL39L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22184,990,800 - 185,009,429 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13184,995,517 - 185,014,111 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03184,146,722 - 184,165,326 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13192,612,140 - 192,630,507 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3192,612,337 - 192,612,492 (-)Ensemblpanpan1.1panPan2
LOC100682542
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11049,680,765 - 49,681,175 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1049,535,774 - 49,536,185 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01050,554,149 - 50,554,547 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11050,261,380 - 50,261,791 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01050,548,040 - 50,548,451 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01050,735,942 - 50,736,353 (-)NCBIUU_Cfam_GSD_1.0
LOC100525679
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX98,178,150 - 98,181,332 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1214,814,759 - 14,815,155 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2216,026,697 - 16,027,096 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPL39L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl1581,390,733 - 81,390,885 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604154,880,086 - 54,899,943 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Rpl39l
147 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:172
Count of miRNA genes:114
Interacting mature miRNAs:127
Transcripts:ENSMUST00000044103, ENSMUST00000121292
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141060Pbwg19_mpostnatal body weight growth 19 (mouse)Not determined16120780888Mouse
1300632Loca2_mlocomotor activity 2 (mouse)Not determined16122500574Mouse
10043879Adip25_madiposity 25 (mouse)Not determined16122520318Mouse
1301575Tanidd3_mtally ho associated non-insulin dependednt diabetes mellitus 3 (mouse)Not determined16122897739Mouse
4141468Nhdlq10_mnon-HDL QTL 10 (mouse)Not determined16124263853Mouse
1301970Heal11_mwound healing/regeneration 11 (mouse)Not determined16124263853Mouse
1301384Dice1_mdetermination of interleukin 4 commitment 1 (mouse)Not determined16128434358Mouse
10402497Lmr23_mleishmaniasis resistance 23 (mouse)Not determined16129674200Mouse
1301559Bbaa19_mB.burgdorferi-associated arthritis 19 (mouse)Not determined16130066977Mouse
10412289Ppsl_mplasma P-selectin levels (mouse)Not determined16130814572Mouse
27095908Scvln7_msacral vertebrae length 2, 5 week (mouse)16331786439820362Mouse
27226768Tibl9_mtibia length 9, 5 week (mouse)16331786451420363Mouse
27226785Feml12_mfemur length 12, 5 week (mouse)16331786464620363Mouse
1302106Rapop1_mradiation-induced apoptosis 1 (mouse)Not determined16378077915731053Mouse
26884432Zlq7_mzygomatic length QTL 7, 10 week (mouse)16381786464620363Mouse
38501069Tip4_mtuberculosis immunophenotype 4, IFN-g level (mouse)16431786444520363Mouse
1301443Mopkd2_mmodifier of polycystic kidney disease progression 2 (mouse)Not determined16464631438646414Mouse
1300656Bgeq15_mbody growth early QTL 15 (mouse)Not determined16577525239775440Mouse
1301945Skl7_mskeletal size (tail length) 7 (mouse)Not determined16577525239775440Mouse
1300943Skts9_mskin tumor susceptibility 9 (mouse)Not determined16577525239775440Mouse
1300987Skull23_mskull morphology 23 (mouse)Not determined16577525239775440Mouse
4141010Bbq1_mbrain and behavior QTL 1 (mouse)Not determined16647700935021216Mouse
1357763Lp1_mlymphocyte proliferation 1 (mouse)Not determined16654297965466552Mouse
4142460Nilac10_mnicotine induced locomotor activity 10 (mouse)Not determined16713690629225471Mouse
1357658Dice1a_mdetermination of interleukin 4 commitment 1a (mouse)Not determined16780110010957706Mouse
11251724Ewc6_methanol withdrawal and consumption 6 (mouse)16822605242226052Mouse
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16841786490896888Mouse
10043978Obq35_mobesity QTL 35 (mouse)Not determined16988163143881631Mouse
13432183Rotse3_mrotarod training saline/ethanol 3 (mouse)16991777110617771Mouse

Markers in Region
UniSTS:237427  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381610,173,900 - 10,174,213UniSTSGRCm38
MGSCv371610,173,993 - 10,174,306UniSTSGRCm37
Celera1610,807,125 - 10,807,438UniSTS
Cytogenetic Map16A1UniSTS
Rpl39l  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371610,174,376 - 10,174,445UniSTSGRCm37
MGSCv371610,174,377 - 10,174,688UniSTSGRCm37
Celera1610,807,509 - 10,807,820UniSTS
Celera1610,807,508 - 10,807,577UniSTS
cM Map16 UniSTS
Rpl39l  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381610,174,284 - 10,174,595UniSTSGRCm38
MGSCv371610,174,377 - 10,174,688UniSTSGRCm37
Celera1610,807,509 - 10,807,820UniSTS
Cytogenetic Map16A1UniSTS
cM Map16 UniSTS
Rpl39l  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381610,174,283 - 10,174,352UniSTSGRCm38
MGSCv371610,174,376 - 10,174,445UniSTSGRCm37
Celera1610,807,508 - 10,807,577UniSTS
Cytogenetic Map16A1UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000044103   ⟹   ENSMUSP00000041794
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl169,988,092 - 9,992,775 (+)Ensembl
GRCm38.p6 Ensembl1610,170,228 - 10,174,911 (+)Ensembl
RefSeq Acc Id: ENSMUST00000121292   ⟹   ENSMUSP00000112791
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl169,988,090 - 9,992,494 (+)Ensembl
GRCm38.p6 Ensembl1610,170,226 - 10,174,630 (+)Ensembl
RefSeq Acc Id: NM_026594   ⟹   NP_080870
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39169,988,092 - 9,992,775 (+)NCBI
GRCm381610,170,228 - 10,174,911 (+)NCBI
MGSCv371610,170,321 - 10,175,004 (+)RGD
Celera1610,803,453 - 10,808,136 (+)RGD
cM Map16 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006522506   ⟹   XP_006522569
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39169,988,061 - 9,992,709 (+)NCBI
GRCm381610,170,197 - 10,174,633 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_080870   ⟸   NM_026594
- UniProtKB: Q9CQD0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006522569   ⟸   XM_006522506
- Peptide Label: isoform X1
- UniProtKB: Q9CQD0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000112791   ⟸   ENSMUST00000121292
RefSeq Acc Id: ENSMUSP00000041794   ⟸   ENSMUST00000044103

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9CQD0-F1-model_v2 AlphaFold Q9CQD0 1-51 view protein structure

Promoters
RGD ID:6827475
Promoter ID:MM_KWN:20069
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:ENSMUST00000121292,   NM_026594
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361610,170,091 - 10,170,591 (+)MPROMDB
RGD ID:8685406
Promoter ID:EPDNEW_M20734
Type:multiple initiation site
Name:Rpl39l_1
Description:Mus musculus ribosomal protein L39-like , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381610,170,249 - 10,170,309EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1915422 AgrOrtholog
Ensembl Genes ENSMUSG00000039209 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000044103 ENTREZGENE
  ENSMUST00000044103.6 UniProtKB/Swiss-Prot
  ENSMUST00000121292 ENTREZGENE
  ENSMUST00000121292.8 UniProtKB/Swiss-Prot
Gene3D-CATH Ribosomal protein L39e UniProtKB/Swiss-Prot
InterPro Ribosomal_L39 UniProtKB/Swiss-Prot
  Ribosomal_L39_CS UniProtKB/Swiss-Prot
  Ribosomal_L39e_dom_sf UniProtKB/Swiss-Prot
KEGG Report mmu:68172 UniProtKB/Swiss-Prot
MGD MGI:1915422 ENTREZGENE
NCBI Gene 68172 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L39-LIKE UniProtKB/Swiss-Prot
  RIBOSOMAL PROTEIN L39E UniProtKB/Swiss-Prot
Pfam Ribosomal_L39 UniProtKB/Swiss-Prot
PhenoGen Rpl39l PhenoGen
PROSITE RIBOSOMAL_L39E UniProtKB/Swiss-Prot
Superfamily-SCOP Ribosomal protein L39e UniProtKB/Swiss-Prot
UniProt Q9CQD0 ENTREZGENE, UniProtKB/Swiss-Prot