Copg2 (coatomer protein complex, subunit gamma 2) - Rat Genome Database

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Gene: Copg2 (coatomer protein complex, subunit gamma 2) Mus musculus
Analyze
Symbol: Copg2
Name: coatomer protein complex, subunit gamma 2
RGD ID: 1556929
MGI Page MGI
Description: Predicted to enable structural molecule activity. Predicted to be involved in Golgi vesicle transport; organelle transport along microtubule; and protein secretion. Predicted to act upstream of or within protein transport. Located in COPI-coated vesicle; Golgi membrane; and growth cone. Is expressed in brain and early conceptus. Orthologous to human COPG2 (COPI coat complex subunit gamma 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AW227625; coatomer subunit gamma-2; gamma-2-coat protein; gamma-2-COP
RGD Orthologs
Human
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39630,747,552 - 30,873,712 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl630,747,553 - 30,873,729 (-)EnsemblGRCm39 Ensembl
GRCm38630,747,554 - 30,896,815 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl630,747,554 - 30,896,794 (-)EnsemblGRCm38mm10GRCm38
MGSCv37630,698,411 - 30,700,638 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv37630,759,559 - 30,846,760 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36630,739,598 - 30,826,921 (-)NCBIMGSCv36mm8
Celera630,758,336 - 30,881,456 (-)NCBICelera
Cytogenetic Map6A3.3NCBI
cM Map612.54NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10788617   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11530856   PMID:11544199   PMID:12477932   PMID:12520002   PMID:12879359  
PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16998848   PMID:21300694   PMID:21677750   PMID:21873635   PMID:22922362   PMID:23139813   PMID:24952961   PMID:25438880  
PMID:26296893   PMID:27113764   PMID:29437892   PMID:30409884   PMID:30457570   PMID:32554809  


Genomics

Comparative Map Data
Copg2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39630,747,552 - 30,873,712 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl630,747,553 - 30,873,729 (-)EnsemblGRCm39 Ensembl
GRCm38630,747,554 - 30,896,815 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl630,747,554 - 30,896,794 (-)EnsemblGRCm38mm10GRCm38
MGSCv37630,698,411 - 30,700,638 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv37630,759,559 - 30,846,760 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36630,739,598 - 30,826,921 (-)NCBIMGSCv36mm8
Celera630,758,336 - 30,881,456 (-)NCBICelera
Cytogenetic Map6A3.3NCBI
cM Map612.54NCBI
COPG2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387130,506,238 - 130,668,748 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7130,506,238 - 130,668,748 (-)EnsemblGRCh38hg38GRCh38
GRCh377130,146,079 - 130,353,588 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367129,933,316 - 130,004,138 (-)NCBINCBI36Build 36hg18NCBI36
Build 347129,740,032 - 129,810,823NCBI
Celera7124,941,854 - 125,101,434 (-)NCBICelera
Cytogenetic Map7q32.2NCBI
HuRef7124,508,567 - 124,669,036 (-)NCBIHuRef
CHM1_17130,079,500 - 130,287,197 (-)NCBICHM1_1
T2T-CHM13v2.07131,819,957 - 131,983,050 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27129,531,485 - 129,690,100 (-)NCBI
Copg2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8460,333,455 - 60,468,953 (-)NCBIGRCr8
mRatBN7.2459,366,086 - 59,501,591 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl459,366,086 - 59,501,618 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx464,344,115 - 64,472,464 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0460,260,299 - 60,388,646 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0458,662,228 - 58,790,583 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0458,064,394 - 58,195,242 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl458,064,833 - 58,195,143 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0457,823,051 - 57,951,204 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4457,859,156 - 57,958,208 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera454,464,559 - 54,595,409 (-)NCBICelera
Cytogenetic Map4q22NCBI
COPG2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26167,325,318 - 167,487,904 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1719,335,764 - 19,498,148 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07122,470,494 - 122,633,223 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17134,988,505 - 135,148,940 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7134,988,505 - 135,149,512 (-)Ensemblpanpan1.1panPan2
COPG2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1146,334,407 - 6,435,789 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl146,336,840 - 6,449,614 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha146,010,826 - 6,125,813 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0146,085,045 - 6,200,061 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl146,085,089 - 6,200,013 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1146,290,387 - 6,405,108 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0146,035,480 - 6,150,362 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0146,179,136 - 6,293,896 (+)NCBIUU_Cfam_GSD_1.0
Copg2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511824,515,387 - 24,650,218 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365794,647,946 - 4,785,336 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365794,648,006 - 4,782,815 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COPG2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1818,209,263 - 18,332,216 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11818,209,378 - 18,331,536 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21819,229,764 - 19,327,957 (+)NCBISscrofa10.2Sscrofa10.2susScr3
COPG2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12199,142,097 - 99,300,386 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2199,138,512 - 99,300,412 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660424,089,527 - 4,258,336 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Copg2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247835,670,115 - 5,797,847 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247835,670,069 - 5,798,150 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Copg2
1559 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:906
Count of miRNA genes:532
Interacting mature miRNAs:622
Transcripts:ENSMUST00000048774, ENSMUST00000122833, ENSMUST00000131256, ENSMUST00000133916, ENSMUST00000134137, ENSMUST00000135230, ENSMUST00000151973, ENSMUST00000166192
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301131Chol2_mcholesterol 2 (mouse)Not determined6132144495Mouse
5491191Mobq2_mmultigenic obesity QTL 2 (mouse)Not determined6132144495Mouse
1302024Skull7_mskull morphology 7 (mouse)Not determined6132144495Mouse
15039372Nmrs22_mNAFLD-associated magnetic resonance shift 22 (mouse)6147633435476334Mouse
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
1300731Smdq3_msegregation of mitochondrial DNA QTL 3 (mouse)Not determined6424920638249325Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487403016Mouse
11353840Bmiq2_mbody mass index QTL 2 (mouse)6450382345291115Mouse
1357520Axtq2_manxiety QTL 2 (mouse)Not determined6450382348703611Mouse
1357481Aaj2_manxiety in A/J 2 (mouse)Not determined6450382348703611Mouse
11353841Bmiq3_mbody mass index QTL 3 (mouse)6450382348703611Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396633110Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396633110Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396633110Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396633110Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080576983Mouse
1302051Sluc7_msusceptibility to lung cancer 7 (mouse)Not determined6929707443297168Mouse
10043869Cia6a_mcollagen induced arthritis QTL 6a (mouse)Not determined61211797146118069Mouse
4141749Obrq2_mobesity resistance QTL 2 (mouse)Not determined1275122146751333Mouse
1301998Bts2_mbladder tumor susceptibility 2 (mouse)Not determined61275122146751333Mouse
27226726Tibmd7_mtibia midshaft diameter 7, 16 week (mouse)61769999953476985Mouse
1301850Fglu_mfasting glucose (mouse)Not determined61771159851711719Mouse
1301724Pcd4ts1_mp-glycoprotein positive CD4 T cell subset 1 (mouse)Not determined61771159851711719Mouse
4140989Spqq2_msperm quality QTL 2 (mouse)Not determined1771159851711719Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414773364675Mouse
12904940Edlmmq5_mextensor digitorum longus muscle mass QTL 5 (mouse)61961634653616346Mouse
12904943Tammq4_mtibialis anterior muscle mass QTL 4 (mouse)61961634653616346Mouse
12904952Gmmq4_mgastrocnemius muscle mass QTL 4 (mouse)61961634653616346Mouse
10412213Sxbq2_mSGC/Knj cross B6 QTL 2 (mouse)Not determined61991268571299759Mouse
10412107Desp4_mdespair 4 (mouse)Not determined62004983054049830Mouse
14700690Ccs6_mcolon cancer susceptibility 6 (mouse)62377693457776934Mouse
13208564Bmiq7_mbody mass index QTL 7 (mouse)62499999979976983Mouse
4141988Obrq3_mobesity resistance QTL 3 (mouse)Not determined2829099362291115Mouse

Markers in Region
RH136088  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38630,747,935 - 30,748,115UniSTSGRCm38
MGSCv37630,697,935 - 30,698,115UniSTSGRCm37
Celera630,757,860 - 30,758,040UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic Map6A3.3UniSTS
cM Map67.5UniSTS
AW227625  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38630,748,485 - 30,748,610UniSTSGRCm38
MGSCv37630,698,485 - 30,698,610UniSTSGRCm37
Celera630,758,410 - 30,758,535UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6B1UniSTS
cM Map67.5UniSTS
Whitehead/MRC_RH6228.75UniSTS
RH124785  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38630,748,204 - 30,748,305UniSTSGRCm38
MGSCv37630,698,204 - 30,698,305UniSTSGRCm37
Celera630,758,129 - 30,758,230UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic Map6A3.3UniSTS
cM Map67.5UniSTS
Copg2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38630,748,659 - 30,749,839UniSTSGRCm38
MGSCv37630,698,659 - 30,699,839UniSTSGRCm37
Celera630,758,584 - 30,759,764UniSTS
Cytogenetic Map6A3.3UniSTS
cM Map6 UniSTS
AW049845  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38630,808,535 - 30,808,633UniSTSGRCm38
MGSCv37630,758,535 - 30,758,633UniSTSGRCm37
Celera630,793,572 - 30,793,670UniSTS
Cytogenetic Map6A3.3UniSTS
Whitehead/MRC_RH6226.53UniSTS
Copg2as1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38630,748,288 - 30,748,727UniSTSGRCm38
MGSCv37630,698,288 - 30,698,727UniSTSGRCm37
Celera630,758,213 - 30,758,652UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic Map6A3.3UniSTS
cM Map6 UniSTS
Copg2as2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38630,808,255 - 30,808,485UniSTSGRCm38
MGSCv37630,758,255 - 30,758,485UniSTSGRCm37
Celera630,793,292 - 30,793,522UniSTS
Cytogenetic Map6A3.3UniSTS
cM Map6 UniSTS
PMC85624P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38630,747,773 - 30,748,134UniSTSGRCm38
MGSCv37630,697,773 - 30,698,134UniSTSGRCm37
Celera630,757,698 - 30,758,059UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6B1UniSTS
cM Map67.5UniSTS
Mest  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38630,748,172 - 30,748,222UniSTSGRCm38
MGSCv37630,698,172 - 30,698,222UniSTSGRCm37
Celera630,758,097 - 30,758,147UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6B1UniSTS
Copg2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6A3.3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001411182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_017478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_149738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_177193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_177194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_183248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001785154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC121800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC183098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AEKQ02054608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AEKQ02054609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AEKQ02054611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AEKQ02054612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AEKQ02054613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AEKQ02054614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AEKQ02054615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF205065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF402597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ251067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK079599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC008136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC049178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM119430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY141049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LXEJ02004924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000048774   ⟹   ENSMUSP00000038368
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl630,747,553 - 30,873,674 (-)Ensembl
GRCm38.p6 Ensembl630,747,554 - 30,896,739 (-)Ensembl
RefSeq Acc Id: ENSMUST00000122833
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl630,835,738 - 30,873,361 (-)Ensembl
GRCm38.p6 Ensembl630,858,803 - 30,896,426 (-)Ensembl
RefSeq Acc Id: ENSMUST00000131256
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl630,835,362 - 30,873,665 (-)Ensembl
GRCm38.p6 Ensembl630,858,427 - 30,896,730 (-)Ensembl
RefSeq Acc Id: ENSMUST00000133916
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl630,800,638 - 30,873,645 (-)Ensembl
GRCm38.p6 Ensembl630,823,703 - 30,896,710 (-)Ensembl
RefSeq Acc Id: ENSMUST00000134137
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl630,873,050 - 30,873,683 (-)Ensembl
GRCm38.p6 Ensembl630,896,115 - 30,896,748 (-)Ensembl
RefSeq Acc Id: ENSMUST00000135230
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl630,801,128 - 30,873,699 (-)Ensembl
GRCm38.p6 Ensembl630,824,193 - 30,896,764 (-)Ensembl
RefSeq Acc Id: ENSMUST00000151973
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl630,871,832 - 30,873,372 (-)Ensembl
GRCm38.p6 Ensembl630,894,897 - 30,896,437 (-)Ensembl
RefSeq Acc Id: ENSMUST00000166192   ⟹   ENSMUSP00000126726
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl630,748,411 - 30,873,729 (-)Ensembl
GRCm38.p6 Ensembl630,748,412 - 30,896,794 (-)Ensembl
RefSeq Acc Id: NM_001411182   ⟹   NP_001398111
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39630,747,552 - 30,873,712 (-)NCBI
RefSeq Acc Id: NM_001411184   ⟹   NP_001398113
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39630,835,346 - 30,873,712 (-)NCBI
RefSeq Acc Id: NM_017478   ⟹   NP_059506
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39630,747,552 - 30,873,712 (-)NCBI
GRCm38630,747,554 - 30,896,794 (-)NCBI
MGSCv37630,759,559 - 30,846,760 (-)RGD
Celera630,757,479 - 30,881,490 (-)NCBI
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_149738
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39630,747,552 - 30,873,712 (-)NCBI
GRCm38630,747,554 - 30,896,794 (-)NCBI
Sequence:
RefSeq Acc Id: NR_177193
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39630,747,552 - 30,873,712 (-)NCBI
RefSeq Acc Id: NR_177194
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39630,747,552 - 30,873,712 (-)NCBI
RefSeq Acc Id: NR_183248
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39630,747,552 - 30,873,712 (-)NCBI
RefSeq Acc Id: XM_036166293   ⟹   XP_036022186
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39630,747,552 - 30,873,403 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001785154
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39630,748,410 - 30,873,403 (-)NCBI
GRCm38630,748,411 - 30,896,815 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_059506   ⟸   NM_017478
- Peptide Label: isoform 1
- UniProtKB: Q3UEL6 (UniProtKB/Swiss-Prot),   Q3TQD5 (UniProtKB/Swiss-Prot),   A6H6J5 (UniProtKB/Swiss-Prot),   Q8C2J6 (UniProtKB/Swiss-Prot),   Q9QXK3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000126726   ⟸   ENSMUST00000166192
RefSeq Acc Id: ENSMUSP00000038368   ⟸   ENSMUST00000048774
RefSeq Acc Id: XP_036022186   ⟸   XM_036166293
- Peptide Label: isoform X1
RefSeq Acc Id: NP_001398111   ⟸   NM_001411182
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001398113   ⟸   NM_001411184
- Peptide Label: isoform 4
Protein Domains
Clathrin/coatomer adaptor adaptin-like N-terminal   Coatomer gamma subunit appendage Ig-like subdomain   Coatomer subunit gamma C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9QXK3-F1-model_v2 AlphaFold Q9QXK3 1-871 view protein structure

Promoters
RGD ID:6889248
Promoter ID:EPDNEW_M8075
Type:initiation region
Name:Copg2_1
Description:Mus musculus coatomer protein complex, subunit gamma 2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38630,896,752 - 30,896,812EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1858683 AgrOrtholog
Ensembl Genes ENSMUSG00000025607 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000048774 ENTREZGENE
  ENSMUST00000048774.13 UniProtKB/Swiss-Prot
  ENSMUST00000131256 ENTREZGENE
  ENSMUST00000166192 ENTREZGENE
  ENSMUST00000166192.7 UniProtKB/Swiss-Prot
Gene3D-CATH 1.25.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.40.1480 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.310.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Clathrin/coatomer_adapt-like_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Clathrin_app_Ig-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Coatomer/calthrin_app_sub_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Coatomer_g_Cpla UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Coatomer_gsu UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Coatomer_gsu_app_Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Coatomer_gsu_app_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TBP_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:54160 UniProtKB/Swiss-Prot
MGD MGI:1858683 ENTREZGENE
NCBI Gene 54160 ENTREZGENE
PANTHER COATOMER SUBUNIT GAMMA-2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10261 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Adaptin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Coatomer_g_Cpla UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  COP-gamma_platf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Copg2 PhenoGen
PIRSF Coatomer_gamma_subunit UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48371 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49348 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF55711 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A6H6J5 ENTREZGENE
  COPG2_MOUSE UniProtKB/Swiss-Prot
  Q3TQD5 ENTREZGENE
  Q3UEL6 ENTREZGENE
  Q8C2J6 ENTREZGENE
  Q922G9_MOUSE UniProtKB/TrEMBL
  Q9QXK3 ENTREZGENE
UniProt Secondary A6H6J5 UniProtKB/Swiss-Prot
  Q3TQD5 UniProtKB/Swiss-Prot
  Q3UEL6 UniProtKB/Swiss-Prot
  Q8C2J6 UniProtKB/Swiss-Prot