Unkl (unkempt family like zinc finger) - Rat Genome Database

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Gene: Unkl (unkempt family like zinc finger) Mus musculus
Analyze
Symbol: Unkl
Name: unkempt family like zinc finger
RGD ID: 1556888
MGI Page MGI
Description: Predicted to enable metal ion binding activity and transferase activity. Predicted to be located in cytosol. Is expressed in ganglia and liver lobe. Orthologous to human UNKL (unk like zinc finger).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1300004G08Rik; Grailexp; Grailexp predicted; MGC102273; putative E3 ubiquitin-protein ligase UNKL; RING finger protein unkempt-like; unkempt-like
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391725,407,336 - 25,453,417 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1725,407,371 - 25,453,417 (+)EnsemblGRCm39 Ensembl
GRCm381725,188,361 - 25,234,443 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1725,188,397 - 25,234,443 (+)EnsemblGRCm38mm10GRCm38
MGSCv371725,359,527 - 25,371,387 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361724,950,182 - 24,962,042 (+)NCBIMGSCv36mm8
Celera1725,752,118 - 25,771,255 (+)NCBICelera
Celera1722,569,874 - 22,572,555 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.53NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (ISO)
nucleus  (IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18799693  
PMID:21267068   PMID:21873635   PMID:25210733   PMID:31138677   PMID:34381067  


Genomics

Comparative Map Data
Unkl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391725,407,336 - 25,453,417 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1725,407,371 - 25,453,417 (+)EnsemblGRCm39 Ensembl
GRCm381725,188,361 - 25,234,443 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1725,188,397 - 25,234,443 (+)EnsemblGRCm38mm10GRCm38
MGSCv371725,359,527 - 25,371,387 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361724,950,182 - 24,962,042 (+)NCBIMGSCv36mm8
Celera1725,752,118 - 25,771,255 (+)NCBICelera
Celera1722,569,874 - 22,572,555 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.53NCBI
UNKL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38161,363,205 - 1,414,704 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl161,363,205 - 1,414,751 (-)EnsemblGRCh38hg38GRCh38
GRCh37161,413,206 - 1,464,705 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36161,353,207 - 1,404,701 (-)NCBINCBI36Build 36hg18NCBI36
Celera161,627,320 - 1,677,303 (-)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef161,341,601 - 1,391,408 (-)NCBIHuRef
CHM1_1161,413,102 - 1,464,651 (-)NCBICHM1_1
T2T-CHM13v2.0161,379,337 - 1,429,329 (-)NCBIT2T-CHM13v2.0
Unkl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81014,710,627 - 14,756,725 (+)NCBIGRCr8
mRatBN7.21014,206,125 - 14,252,226 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1014,206,189 - 14,252,225 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01014,547,126 - 14,593,090 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1014,547,172 - 14,590,762 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01014,362,268 - 14,410,685 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41014,434,117 - 14,480,497 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1013,878,739 - 13,924,650 (+)NCBICelera
Cytogenetic Map10q12NCBI
Unkl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544215,827,350 - 15,870,561 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544215,827,352 - 15,870,561 (+)NCBIChiLan1.0ChiLan1.0
UNKL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2181,626,825 - 1,676,774 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1165,414,094 - 5,469,218 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01611,145 - 39,682 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1161,418,377 - 1,433,175 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl161,418,377 - 1,457,134 (-)Ensemblpanpan1.1panPan2
UNKL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1639,382,858 - 39,405,954 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl639,376,488 - 39,404,885 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha640,644,236 - 40,673,896 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0639,722,519 - 39,752,188 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl639,722,571 - 39,752,187 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1639,399,493 - 39,429,140 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0639,371,965 - 39,401,580 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0639,850,390 - 39,880,071 (+)NCBIUU_Cfam_GSD_1.0
Unkl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344104,179,801 - 104,217,621 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366942,492,102 - 2,527,305 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366942,492,102 - 2,529,662 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UNKL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl340,445,034 - 40,513,047 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1340,444,997 - 40,513,050 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2342,010,437 - 42,078,463 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UNKL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.151,279,429 - 1,303,996 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl51,253,941 - 1,303,950 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606829,782,557 - 29,832,809 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Unkl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249132,071,629 - 2,114,718 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249132,071,512 - 2,114,712 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Unkl
1275 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3202
Count of miRNA genes:739
Interacting mature miRNAs:924
Transcripts:ENSMUST00000015271, ENSMUST00000039734, ENSMUST00000160785, ENSMUST00000160896, ENSMUST00000161679, ENSMUST00000162498, ENSMUST00000162838
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357902Obq19_mobesity QTL 19 (mouse)Not determined17125662076Mouse
12910982Pifs2_mpeptide-induced fatal syndrome 2 (mouse)17126189355Mouse
1357743Lith3_mlithogenic gene 3 (mouse)Not determined17126194456Mouse
1301615Cfld3_mcystic fibrosis lung disease 3 (mouse)Not determined17127081639Mouse
1300613Pcyts4_mplasmacytoma susceptibility 4 (mouse)Not determined17127081639Mouse
1302100Circp2_mcircadian photosensitivity 2 (mouse)Not determined17129198453Mouse
12910527Nrq1a_mnoise-induced hearing loss resistant QTL 1a (mouse)17129198453Mouse
12910528Nrq1_mnoise-induced hearing loss resistant QTL 1 (mouse)17129198453Mouse
13524851Asrq8_macoustic startle response 8 (mouse)17131030170Mouse
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17334817537348299Mouse
1357680Idd23_minsulin dependent diabetes susceptibility 23 (mouse)Not determined17397489026401133Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17397489048866091Mouse
1301327Lmr7_mleishmaniasis resistance 7 (mouse)Not determined17485475227715939Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined485475245670266Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17485475246469702Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17485475247885665Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17689393640893936Mouse
4141608Phl1_mprogressive hearing loss 1 (mouse)Not determined17787584329487423Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17858491442585149Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17858491442585149Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171087811944878219Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1120648439364059Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1188597145886119Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171199818445998184Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171245178746451787Mouse
1558807Ceat1_mchronic experimental autoimmune thyroiditis 1 (mouse)Not determined171263668226401133Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171264696146646961Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171412337248123496Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171506165249061760Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171506165249061760Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171506165249061760Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171506165249061760Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171681972150819843Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171681972150819843Mouse
1302038Radpf1_mradiation pulmonary fibrosis 1 (mouse)Not determined171683545533819843Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171702994351030078Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171746220851462345Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171746220851462345Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171746220851462345Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171746220851462345Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171817541252178214Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171841835752420983Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171842214152424327Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171914502553145025Mouse
12910769Rtmq1_mrenal tumor modifier QTL 1 (mouse)172290003625721472Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172461275058612864Mouse
10412198Sst5_msusceptibility to tuberculosis 5 (mouse)Not determined172507658355712970Mouse

Markers in Region
RH126905  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371725,371,356 - 25,371,555UniSTSGRCm37
Celera1723,126,379 - 23,126,578UniSTS
Celera1722,572,524 - 22,572,723UniSTS
Celera1722,851,850 - 22,852,049UniSTS
Cytogenetic Map17A3.3UniSTS
Whitehead/MRC_RH17312.44UniSTS
UniSTS:237593  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381725,186,402 - 25,186,615UniSTSGRCm38
MGSCv371725,323,347 - 25,323,560UniSTSGRCm37
Celera1725,715,898 - 25,716,111UniSTS
Cytogenetic Map17A3.3UniSTS
AU067744  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371725,371,466 - 25,371,587UniSTSGRCm37
Celera1723,126,489 - 23,126,610UniSTS
Celera1722,572,634 - 22,572,755UniSTS
Celera1722,851,960 - 22,852,081UniSTS
Cytogenetic Map17A3.3UniSTS
Whitehead/MRC_RH17315.25UniSTS
UniSTS:224932  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381725,187,423 - 25,187,616UniSTSGRCm38
MGSCv371725,324,368 - 25,324,561UniSTSGRCm37
Celera1725,716,921 - 25,717,114UniSTS
Cytogenetic Map17A3.3UniSTS
D17Jcs43  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381725,189,209 - 25,189,395UniSTSGRCm38
MGSCv371725,326,154 - 25,326,340UniSTSGRCm37
Celera1725,718,734 - 25,718,929UniSTS
Cytogenetic Map17A3.3UniSTS
cM Map17 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001197024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001290736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_028789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006525022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006525024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011246684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017317696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017317697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017317698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003952197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003952198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004939592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC130711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK054549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY491413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC059910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC089378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC150842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ068427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000015271   ⟹   ENSMUSP00000015271
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1725,441,556 - 25,453,416 (+)Ensembl
GRCm38.p6 Ensembl1725,222,582 - 25,234,442 (+)Ensembl
RefSeq Acc Id: ENSMUST00000039734   ⟹   ENSMUSP00000039670
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1725,407,371 - 25,453,417 (+)Ensembl
GRCm38.p6 Ensembl1725,188,397 - 25,234,443 (+)Ensembl
RefSeq Acc Id: ENSMUST00000160785   ⟹   ENSMUSP00000124121
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1725,408,438 - 25,424,708 (+)Ensembl
GRCm38.p6 Ensembl1725,189,464 - 25,205,734 (+)Ensembl
RefSeq Acc Id: ENSMUST00000160896   ⟹   ENSMUSP00000124276
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1725,407,888 - 25,453,417 (+)Ensembl
GRCm38.p6 Ensembl1725,188,914 - 25,234,443 (+)Ensembl
RefSeq Acc Id: ENSMUST00000161679
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1725,441,753 - 25,450,841 (+)Ensembl
GRCm38.p6 Ensembl1725,222,779 - 25,231,867 (+)Ensembl
RefSeq Acc Id: ENSMUST00000162498   ⟹   ENSMUSP00000124530
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1725,441,513 - 25,448,431 (+)Ensembl
GRCm38.p6 Ensembl1725,222,539 - 25,229,457 (+)Ensembl
RefSeq Acc Id: ENSMUST00000162838
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1725,429,659 - 25,432,352 (+)Ensembl
GRCm38.p6 Ensembl1725,210,685 - 25,213,378 (+)Ensembl
RefSeq Acc Id: NM_001197024   ⟹   NP_001183953
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391725,407,374 - 25,453,416 (+)NCBI
GRCm381725,188,400 - 25,234,442 (+)NCBI
Celera1722,569,874 - 22,572,556 (+)NCBI
Celera1725,718,439 - 25,771,255 (+)NCBI
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001290736   ⟹   NP_001277665
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391725,407,888 - 25,453,417 (+)NCBI
GRCm381725,188,914 - 25,234,443 (+)NCBI
Celera1722,569,874 - 22,572,556 (+)NCBI
Celera1725,718,439 - 25,771,255 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001357876   ⟹   NP_001344805
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391725,407,371 - 25,453,417 (+)NCBI
GRCm381725,188,397 - 25,234,443 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001357877   ⟹   NP_001344806
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391725,407,371 - 25,453,417 (+)NCBI
GRCm381725,188,397 - 25,234,443 (+)NCBI
Sequence:
RefSeq Acc Id: NM_028789   ⟹   NP_083065
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391725,441,556 - 25,453,416 (+)NCBI
GRCm381725,222,582 - 25,234,442 (+)NCBI
MGSCv371725,359,527 - 25,371,387 (+)RGD
Celera1725,718,439 - 25,771,255 (+)NCBI
Celera1722,569,874 - 22,572,556 (+)NCBI
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006525022   ⟹   XP_006525085
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391725,407,336 - 25,453,417 (+)NCBI
GRCm381725,188,368 - 25,234,443 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006525024   ⟹   XP_006525087
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391725,441,374 - 25,453,417 (+)NCBI
GRCm381725,220,410 - 25,234,443 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011246684   ⟹   XP_011244986
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391725,407,345 - 25,453,417 (+)NCBI
GRCm381725,188,371 - 25,234,443 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017317696   ⟹   XP_017173185
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391725,407,920 - 25,453,417 (+)NCBI
GRCm381725,188,946 - 25,234,443 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017317697   ⟹   XP_017173186
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391725,441,770 - 25,453,417 (+)NCBI
GRCm381725,222,796 - 25,234,443 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017317698   ⟹   XP_017173187
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391725,443,849 - 25,453,417 (+)NCBI
GRCm381725,224,877 - 25,234,443 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250111   ⟹   XP_030105971
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391725,407,491 - 25,453,417 (+)NCBI
GRCm381725,188,823 - 25,234,443 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250112   ⟹   XP_030105972
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391725,407,471 - 25,453,417 (+)NCBI
GRCm381725,188,497 - 25,234,443 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250113   ⟹   XP_030105973
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391725,407,489 - 25,453,417 (+)NCBI
GRCm381725,188,513 - 25,234,443 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250114   ⟹   XP_030105974
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391725,407,460 - 25,453,417 (+)NCBI
GRCm381725,188,486 - 25,234,443 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250115   ⟹   XP_030105975
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391725,439,346 - 25,453,417 (+)NCBI
GRCm381725,220,401 - 25,234,443 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250116   ⟹   XP_030105976
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391725,407,460 - 25,453,417 (+)NCBI
GRCm381725,188,486 - 25,234,443 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250117   ⟹   XP_030105977
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391725,407,350 - 25,453,417 (+)NCBI
GRCm381725,188,376 - 25,234,443 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036160816   ⟹   XP_036016709
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391725,441,296 - 25,453,417 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003952197
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391725,407,336 - 25,453,417 (+)NCBI
GRCm381725,188,362 - 25,234,443 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003952198
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391725,407,336 - 25,453,417 (+)NCBI
GRCm381725,188,361 - 25,234,443 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004939592
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391725,407,336 - 25,453,417 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001183953 (Get FASTA)   NCBI Sequence Viewer  
  NP_001277665 (Get FASTA)   NCBI Sequence Viewer  
  NP_001344805 (Get FASTA)   NCBI Sequence Viewer  
  NP_001344806 (Get FASTA)   NCBI Sequence Viewer  
  NP_083065 (Get FASTA)   NCBI Sequence Viewer  
  XP_006525085 (Get FASTA)   NCBI Sequence Viewer  
  XP_006525087 (Get FASTA)   NCBI Sequence Viewer  
  XP_011244986 (Get FASTA)   NCBI Sequence Viewer  
  XP_017173185 (Get FASTA)   NCBI Sequence Viewer  
  XP_017173186 (Get FASTA)   NCBI Sequence Viewer  
  XP_017173187 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105971 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105972 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105973 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105974 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105975 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105976 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105977 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016709 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH89378 (Get FASTA)   NCBI Sequence Viewer  
  AAI50843 (Get FASTA)   NCBI Sequence Viewer  
  AAS21649 (Get FASTA)   NCBI Sequence Viewer  
  BAB23653 (Get FASTA)   NCBI Sequence Viewer  
  EDL22408 (Get FASTA)   NCBI Sequence Viewer  
  EDL22409 (Get FASTA)   NCBI Sequence Viewer  
  EDL22410 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000015271
  ENSMUSP00000015271.6
  ENSMUSP00000039670
  ENSMUSP00000039670.6
  ENSMUSP00000124121.2
  ENSMUSP00000124276
  ENSMUSP00000124276.2
  ENSMUSP00000124530.2
GenBank Protein Q5FWH2 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_083065   ⟸   NM_028789
- Peptide Label: isoform 2
- UniProtKB: B9EKD9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001183953   ⟸   NM_001197024
- Peptide Label: isoform 1
- UniProtKB: Q6RUT6 (UniProtKB/Swiss-Prot),   Q9DBK4 (UniProtKB/Swiss-Prot),   Q5FWH2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006525085   ⟸   XM_006525022
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006525087   ⟸   XM_006525024
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: NP_001277665   ⟸   NM_001290736
- Peptide Label: isoform 3
- UniProtKB: E0CYD7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011244986   ⟸   XM_011246684
- Peptide Label: isoform X2
- UniProtKB: E0CYD7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017173185   ⟸   XM_017317696
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017173186   ⟸   XM_017317697
- Peptide Label: isoform X7
- UniProtKB: B9EKD9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017173187   ⟸   XM_017317698
- Peptide Label: isoform X7
- UniProtKB: B9EKD9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030105977   ⟸   XM_030250117
- Peptide Label: isoform X7
- UniProtKB: B9EKD9 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001344805   ⟸   NM_001357876
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001344806   ⟸   NM_001357877
- Peptide Label: isoform 3
- UniProtKB: E0CYD7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030105976   ⟸   XM_030250116
- Peptide Label: isoform X7
- UniProtKB: B9EKD9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030105974   ⟸   XM_030250114
- Peptide Label: isoform X4
RefSeq Acc Id: XP_030105972   ⟸   XM_030250112
- Peptide Label: isoform X2
- UniProtKB: E0CYD7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030105973   ⟸   XM_030250113
- Peptide Label: isoform X4
RefSeq Acc Id: XP_030105971   ⟸   XM_030250111
- Peptide Label: isoform X2
- UniProtKB: E0CYD7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030105975   ⟸   XM_030250115
- Peptide Label: isoform X6
- UniProtKB: B9EKD9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000015271   ⟸   ENSMUST00000015271
RefSeq Acc Id: ENSMUSP00000124276   ⟸   ENSMUST00000160896
RefSeq Acc Id: ENSMUSP00000124121   ⟸   ENSMUST00000160785
RefSeq Acc Id: ENSMUSP00000124530   ⟸   ENSMUST00000162498
RefSeq Acc Id: ENSMUSP00000039670   ⟸   ENSMUST00000039734
RefSeq Acc Id: XP_036016709   ⟸   XM_036160816
- Peptide Label: isoform X5
Protein Domains
C3H1-type   RING-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5FWH2-F1-model_v2 AlphaFold Q5FWH2 1-727 view protein structure

Promoters
RGD ID:13675126
Promoter ID:EPDNEW_M21712
Type:multiple initiation site
Name:Unkl_1
Description:Mus musculus unkempt family like zinc finger , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381725,188,403 - 25,188,463EPDNEW
RGD ID:6828181
Promoter ID:MM_KWN:22593
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   ES_Cell,   MEF_B4
Transcripts:NM_028789,   XM_619521_2_GM5819
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361725,358,911 - 25,359,537 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1921404 AgrOrtholog
Ensembl Genes ENSMUSG00000015127 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000015271 ENTREZGENE
  ENSMUST00000015271.12 UniProtKB/Swiss-Prot
  ENSMUST00000039734 ENTREZGENE
  ENSMUST00000039734.12 UniProtKB/Swiss-Prot
  ENSMUST00000160785.2 UniProtKB/TrEMBL
  ENSMUST00000160896 ENTREZGENE
  ENSMUST00000160896.8 UniProtKB/TrEMBL
  ENSMUST00000162498.8 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1370.210 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Zinc finger, CCCH-type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Unkempt-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Unkempt_Znf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_CCCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_CCCH_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:74154 UniProtKB/Swiss-Prot
MGD MGI:1921404 ENTREZGENE
NCBI Gene 74154 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE UNKL-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR14493 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam zf-C3HC4_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-CCCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf_CCCH_5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Unkl PhenoGen
PROSITE ZF_C3H1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ZnF_C3H1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF90229 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B9EKD9 ENTREZGENE, UniProtKB/TrEMBL
  E0CY27_MOUSE UniProtKB/TrEMBL
  E0CYD7 ENTREZGENE, UniProtKB/TrEMBL
  F6TWQ1_MOUSE UniProtKB/TrEMBL
  Q5FWH2 ENTREZGENE
  Q6RUT6 ENTREZGENE
  Q9DBK4 ENTREZGENE
  UNKL_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q6RUT6 UniProtKB/Swiss-Prot
  Q9DBK4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-14 Unkl  unkempt family like zinc finger    unkempt-like (Drosophila)  Symbol and/or name change 5135510 APPROVED