Gm24958 (predicted gene, 24958) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Gm24958 (predicted gene, 24958) Mus musculus
Analyze
Symbol: Gm24958 (Ensembl: Gm56314)
Name: predicted gene, 24958 (Ensembl:predicted gene, 56314)
RGD ID: 15556632
MGI Page MGI
Description:
Type: snorna (Ensembl: miRNA)
RefSeq Status: MODEL
Previously known as: LOC115487911; small nucleolar RNA SNORD125
RGD Orthologs
Human
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 Ensembl - Mouse Genome Assembly GRCm39 Ensembl
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39114,988,211 - 4,988,307 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl114,988,204 - 4,988,307 (+)EnsemblGRCm39 Ensembl
GRCm39 Ensembl114,988,211 - 4,988,307 (+)EnsemblGRCm39 Ensembl
GRCm38115,038,211 - 5,038,307 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl115,038,211 - 5,038,307 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map11A1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm24958
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39114,988,211 - 4,988,307 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl114,988,204 - 4,988,307 (+)EnsemblGRCm39 Ensembl
GRCm39 Ensembl114,988,211 - 4,988,307 (+)EnsemblGRCm39 Ensembl
GRCm38115,038,211 - 5,038,307 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl115,038,211 - 5,038,307 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map11A1NCBI
SNORD125
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382229,333,163 - 29,333,258 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2229,333,163 - 29,333,258 (-)EnsemblGRCh38hg38GRCh38
GRCh372229,729,152 - 29,729,247 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362228,059,152 - 28,059,247 (-)NCBINCBI36Build 36hg18NCBI36
Celera2213,529,008 - 13,529,103 (-)NCBICelera
Cytogenetic Map22q12.2NCBI
HuRef2212,693,391 - 12,693,486 (-)NCBIHuRef
CHM1_12229,688,552 - 29,688,647 (-)NCBICHM1_1
T2T-CHM13v2.02229,796,575 - 29,796,670 (-)NCBIT2T-CHM13v2.0
LOC120096836
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81484,140,020 - 84,140,116 (+)NCBIGRCr8
mRatBN7.21479,925,963 - 79,926,059 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1479,925,963 - 79,926,059 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1485,277,049 - 85,277,145 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map14q21NCBI
LOC119866291
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha2622,510,475 - 22,510,571 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02623,012,769 - 23,012,865 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12622,721,932 - 22,722,028 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02622,985,078 - 22,985,174 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02623,050,095 - 23,050,191 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Gm24958
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:70
Count of miRNA genes:65
Interacting mature miRNAs:68
Transcripts:ENSMUST00000158009
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004937371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL645522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000158009
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,988,211 - 4,988,307 (+)Ensembl
GRCm38.p6 Ensembl115,038,211 - 5,038,307 (+)Ensembl
RefSeq Acc Id: ENSMUST00020183401
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,988,204 - 4,988,307 (+)Ensembl
RefSeq Acc Id: XR_004937371
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,988,211 - 4,988,307 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000088634 Ensembl, ENTREZGENE
  ENSMUSG00002076930 Ensembl
Ensembl Transcript ENSMUST00000158009 ENTREZGENE
MGD MGI:5454735 ENTREZGENE
NCBI Gene LOC115487911 ENTREZGENE
PhenoGen Gm24958 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-11-06 Gm24958  predicted gene, 24958  Gm56314  predicted gene, 56314  Symbol and/or name updated 27372883 PROVISIONAL
2022-10-27 Gm56314  predicted gene, 56314  Gm24958  predicted gene, 24958  Symbol and/or name change 19259462 PROVISIONAL
2020-07-02 Gm24958  predicted gene, 24958  LOC115487911  small nucleolar RNA SNORD125  Symbol and/or name change 19259462 PROVISIONAL
2020-06-19 LOC115487911  small nucleolar RNA SNORD125  Gm24958  predicted gene, 24958  Symbol and/or name change 5135510 APPROVED