Gm25506 (predicted gene, 25506) - Rat Genome Database
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Gene: Gm25506 (predicted gene, 25506) Mus musculus
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Symbol: Gm25506
Name: predicted gene, 25506
RGD ID: 15554540
MGI Page MGI
Description: INTERACTS WITH arsane (ortholog); arsenic atom (ortholog); carbon nanotube (ortholog)
Type: snorna
RefSeq Status: MODEL
Also known as: LOC115487056; small nucleolar RNA SNORD41
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38.p6 Ensembl - Mouse Genome Assembly GRCm38 Ensembl
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39885,776,836 - 85,776,905 (+)NCBIGRCm39mm39
GRCm38885,050,207 - 85,050,276 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl885,050,207 - 85,050,276 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map8C3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Gm25506
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39885,776,836 - 85,776,905 (+)NCBIGRCm39mm39
GRCm38885,050,207 - 85,050,276 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl885,050,207 - 85,050,276 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map8C3NCBI
SNORD41
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1912,706,449 - 12,706,518 (-)EnsemblGRCh38hg38GRCh38
GRCh381912,706,449 - 12,706,518 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371912,817,263 - 12,817,332 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361912,678,263 - 12,678,332 (-)NCBINCBI36hg18NCBI36
Build 341912,678,262 - 12,678,332NCBI
Celera1912,706,976 - 12,707,045 (-)NCBI
Cytogenetic Map19p13.13NCBI
HuRef1912,390,576 - 12,390,645 (-)NCBIHuRef
CHM1_11912,817,768 - 12,817,837 (-)NCBICHM1_1


QTLs in Region (GRCm38.p6 Ensembl)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871102903105103009Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7113678390202598Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71287817123895615Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871287817123895615Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined871396181105396393Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873202495107202598Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)873400000126100000Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined875675517109675623Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined875685348109685497Mouse
1301808Nhdlq1_mnon-HDL QTL 1 (mouse)Not determined875685348109685497Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined875685348109685497Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined875685348109685497Mouse
1301099Cbm2_mcerebellum weight 2 (mouse)Not determined878518613112518703Mouse
1301581Char2_mP. chabaudi malaria resistance QTL 2 (mouse)Not determined879082178113082403Mouse
12904012Cfq10_mconditioned fear QTL 10 (mouse)88006677589014359Mouse
10755530Wbc2_mwhite blood cell count 2 (mouse)881092664115092664Mouse
10755519Wbc1_mwhite blood cell count 1 (mouse)881619151115619151Mouse
1301766Desp1_mdespair 1 (mouse)Not determined884759576118759741Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:231
Count of miRNA genes:214
Interacting mature miRNAs:225
Transcripts:ENSMUST00000104339
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004935265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC163703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000104339
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl885,050,207 - 85,050,276 (+)Ensembl
RefSeq Acc Id: XR_004935265
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,776,836 - 85,776,905 (+)NCBI

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000077527 Ensembl, ENTREZGENE
MGD MGI:5455283 ENTREZGENE
NCBI Gene LOC115487056 ENTREZGENE
PhenoGen Gm25506 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-02 Gm25506  predicted gene, 25506  LOC115487056  small nucleolar RNA SNORD41  Symbol and/or name change 19259462 PROVISIONAL
2020-06-30 LOC115487056  small nucleolar RNA SNORD41  Gm25506  predicted gene, 25506  Symbol and/or name change 5135510 APPROVED
2020-06-25 Gm25506  predicted gene, 25506  LOC115487056  small nucleolar RNA SNORD41  Symbol and/or name change 19259462 PROVISIONAL
2020-06-19 LOC115487056  small nucleolar RNA SNORD41  Gm25506  predicted gene, 25506  Symbol and/or name change 5135510 APPROVED