Gm24044 (predicted gene, 24044) - Rat Genome Database
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Gene: Gm24044 (predicted gene, 24044) Mus musculus
Analyze
Symbol: Gm24044
Name: predicted gene, 24044
RGD ID: 15554259
MGI Page MGI
Description: INTERACTS WITH (-)-epigallocatechin 3-gallate (ortholog); cisplatin (ortholog); potassium chromate (ortholog)
Type: snorna
RefSeq Status: MODEL
Also known as: LOC115485682; small nucleolar RNA SNORA62/SNORA6 family
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38.p6 Ensembl - Mouse Genome Assembly GRCm38 Ensembl
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399119,957,846 - 119,958,001 (+)NCBIGRCm39mm39
GRCm389120,128,780 - 120,128,935 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9120,128,780 - 120,128,935 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map9F4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Gm24044
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399119,957,846 - 119,958,001 (+)NCBIGRCm39mm39
GRCm389120,128,780 - 120,128,935 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9120,128,780 - 120,128,935 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map9F4NCBI
SNORA6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl339,408,389 - 39,408,539 (+)EnsemblGRCh38hg38GRCh38
GRCh38339,408,391 - 39,408,539 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37339,449,882 - 39,450,030 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36339,424,886 - 39,425,034 (+)NCBINCBI36hg18NCBI36
Celera339,391,466 - 39,391,614 (+)NCBI
Cytogenetic Map3p22.1NCBI
HuRef339,493,219 - 39,493,367 (+)NCBIHuRef
CHM1_1339,400,995 - 39,401,143 (+)NCBICHM1_1


QTLs in Region (GRCm38.p6 Ensembl)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:111
Count of miRNA genes:108
Interacting mature miRNAs:111
Transcripts:ENSMUST00000083107
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004935891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC110091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000083107
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9120,128,780 - 120,128,935 (+)Ensembl
RefSeq Acc Id: XR_004935891
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399119,957,846 - 119,958,001 (+)NCBI

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000065041 Ensembl, ENTREZGENE
MGD MGI:5453821 ENTREZGENE
NCBI Gene LOC115485682 ENTREZGENE
PhenoGen Gm24044 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-02 Gm24044  predicted gene, 24044  LOC115485682  small nucleolar RNA SNORA62/SNORA6 family  Symbol and/or name change 19259462 PROVISIONAL
2020-06-30 LOC115485682  small nucleolar RNA SNORA62/SNORA6 family  Gm24044  predicted gene, 24044  Symbol and/or name change 5135510 APPROVED
2020-06-25 Gm24044  predicted gene, 24044  LOC115485682  small nucleolar RNA SNORA62/SNORA6 family  Symbol and/or name change 19259462 PROVISIONAL
2020-06-19 LOC115485682  small nucleolar RNA SNORA62/SNORA6 family  Gm24044  predicted gene, 24044  Symbol and/or name change 5135510 APPROVED