Gm24357 (predicted gene, 24357) - Rat Genome Database

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Gene: Gm24357 (predicted gene, 24357) Mus musculus
Analyze
Symbol: Gm24357
Name: predicted gene, 24357
RGD ID: 15554239
MGI Page MGI
Description: INTERACTS WITH (-)-epigallocatechin 3-gallate (ortholog); benzo[a]pyrene (ortholog); chromium(6+) (ortholog)
Type: snorna
RefSeq Status: MODEL
Previously known as: LOC115487272; small nucleolar RNA Z40
RGD Orthologs
Human
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 Ensembl - Mouse Genome Assembly GRCm39 Ensembl
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39915,226,818 - 15,226,891 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl915,226,818 - 15,226,891 (+)EnsemblGRCm39 Ensembl
GRCm38915,315,522 - 15,315,595 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl915,315,522 - 15,315,595 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map9A2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Gm24357
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39915,226,818 - 15,226,891 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl915,226,818 - 15,226,891 (+)EnsemblGRCm39 Ensembl
GRCm38915,315,522 - 15,315,595 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl915,315,522 - 15,315,595 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map9A2NCBI
SNORD6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381193,731,503 - 93,731,573 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1193,731,502 - 93,731,574 (-)EnsemblGRCh38hg38GRCh38
GRCh371193,464,669 - 93,464,739 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361193,104,317 - 93,104,387 (-)NCBINCBI36Build 36hg18NCBI36
Celera1190,756,121 - 90,756,191 (-)NCBICelera
Cytogenetic Map11q21NCBI
HuRef1189,541,902 - 89,541,972 (-)NCBIHuRef
CHM1_11193,347,682 - 93,347,752 (-)NCBICHM1_1
T2T-CHM13v2.01193,647,884 - 93,647,954 (-)NCBIT2T-CHM13v2.0
Snord6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8820,437,180 - 20,437,252 (+)NCBIGRCr8
mRatBN7.2812,155,781 - 12,155,853 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl812,155,781 - 12,155,853 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl813,870,489 - 13,870,561 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map8q12NCBI
LOC119865045
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha217,037,322 - 7,037,394 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0217,202,583 - 7,202,655 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl217,202,583 - 7,202,655 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1216,988,747 - 6,988,819 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0217,053,147 - 7,053,219 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0217,102,010 - 7,102,082 (+)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Gm24357
3 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:59
Count of miRNA genes:59
Interacting mature miRNAs:59
Transcripts:ENSMUST00000082863
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004935903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC154296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000082863
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl915,226,818 - 15,226,891 (+)Ensembl
GRCm38.p6 Ensembl915,315,522 - 15,315,595 (+)Ensembl
RefSeq Acc Id: XR_004935903
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39915,226,818 - 15,226,891 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000064797 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000082863 ENTREZGENE
MGD MGI:5454134 ENTREZGENE
NCBI Gene LOC115487272 ENTREZGENE
PhenoGen Gm24357 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-02 Gm24357  predicted gene, 24357  LOC115487272  small nucleolar RNA Z40  Symbol and/or name change 19259462 PROVISIONAL
2020-06-30 LOC115487272  small nucleolar RNA Z40  Gm24357  predicted gene, 24357  Symbol and/or name change 5135510 APPROVED
2020-06-25 Gm24357  predicted gene, 24357  LOC115487272  small nucleolar RNA Z40  Symbol and/or name change 19259462 PROVISIONAL
2020-06-19 LOC115487272  small nucleolar RNA Z40  Gm24357  predicted gene, 24357  Symbol and/or name change 5135510 APPROVED