Snora9 (small nucleolar RNA, H/ACA box 9) - Rat Genome Database

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Gene: Snora9 (small nucleolar RNA, H/ACA box 9) Mus musculus
Analyze
Symbol: Snora9
Name: small nucleolar RNA, H/ACA box 9
RGD ID: 15554214
MGI Page MGI
Description: INTERACTS WITH 17beta-estradiol (ortholog); cisplatin (ortholog); doxorubicin (ortholog)
Type: snorna
RefSeq Status: MODEL
Previously known as: Gm22457; LOC115487884; small nucleolar RNA SNORA9
RGD Orthologs
Human
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 Ensembl - Mouse Genome Assembly GRCm39 Ensembl
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39116,478,033 - 6,478,165 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl116,478,033 - 6,478,165 (-)EnsemblGRCm39 Ensembl
GRCm38116,528,033 - 6,528,165 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl116,528,033 - 6,528,165 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map11A1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Snora9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39116,478,033 - 6,478,165 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl116,478,033 - 6,478,165 (-)EnsemblGRCm39 Ensembl
GRCm38116,528,033 - 6,528,165 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl116,528,033 - 6,528,165 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map11A1NCBI
SNORA9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38744,985,378 - 44,985,510 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl744,985,378 - 44,985,510 (-)EnsemblGRCh38hg38GRCh38
GRCh37745,024,977 - 45,025,109 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36744,991,502 - 44,991,634 (-)NCBINCBI36Build 36hg18NCBI36
Celera745,123,743 - 45,123,875 (-)NCBICelera
Cytogenetic Map7p13NCBI
HuRef744,910,160 - 44,910,292 (-)NCBIHuRef
CHM1_1745,028,908 - 45,029,040 (-)NCBICHM1_1
T2T-CHM13v2.0745,145,743 - 45,145,875 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2745,064,450 - 45,064,582 (-)NCBI
LOC120096790
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85118,081,985 - 118,082,117 (+)NCBIGRCr8
mRatBN7.21481,407,988 - 81,408,120 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1481,407,988 - 81,408,120 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1486,802,534 - 86,802,666 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map14q21NCBI
LOC119865050
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha2145,627,105 - 45,627,235 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02147,281,519 - 47,281,649 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12146,261,276 - 46,261,406 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02146,437,249 - 46,437,379 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02146,949,798 - 46,949,928 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Snora9
7 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:101
Count of miRNA genes:97
Interacting mature miRNAs:99
Transcripts:ENSMUST00000082579
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004937332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL646047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000082579
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl116,478,033 - 6,478,165 (-)Ensembl
GRCm38.p6 Ensembl116,528,033 - 6,528,165 (-)Ensembl
RefSeq Acc Id: XR_004937332
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39116,478,033 - 6,478,165 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000064513 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000082579 ENTREZGENE
MGD MGI:5452234 ENTREZGENE
NCBI Gene LOC115487884 ENTREZGENE
PhenoGen Snora9 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-02 Snora9  small nucleolar RNA, H/ACA box 9  LOC115487884  small nucleolar RNA SNORA9  Symbol and/or name change 19259462 PROVISIONAL
2020-06-30 LOC115487884  small nucleolar RNA SNORA9  Snora9  small nucleolar RNA, H/ACA box 9  Symbol and/or name change 5135510 APPROVED
2020-06-25 Snora9  small nucleolar RNA, H/ACA box 9  LOC115487884  small nucleolar RNA SNORA9  Symbol and/or name change 19259462 PROVISIONAL
2020-06-19 LOC115487884  small nucleolar RNA SNORA9  Snora9  small nucleolar RNA, H/ACA box 9  Symbol and/or name change 5135510 APPROVED