Letm1 (leucine zipper-EF-hand containing transmembrane protein 1) - Rat Genome Database

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Gene: Letm1 (leucine zipper-EF-hand containing transmembrane protein 1) Mus musculus
Analyze
Symbol: Letm1
Name: leucine zipper-EF-hand containing transmembrane protein 1
RGD ID: 1553847
MGI Page MGI
Description: Enables calcium:proton antiporter activity. Involved in cellular calcium ion homeostasis and protein complex oligomerization. Located in mitochondrial inner membrane. Is expressed in gonad and seminiferous cord. Orthologous to human LETM1 (leucine zipper and EF-hand containing transmembrane protein 1); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; benzo[a]pyrene.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: LETM1 and EF-hand domain-containing protein 1, mitochondrial; leucine zipper-EF-hand-containing transmembrane protein 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39533,897,017 - 33,940,061 (-)NCBIGRCm39mm39
GRCm39 Ensembl533,897,017 - 33,940,161 (-)Ensembl
GRCm38533,739,673 - 33,782,717 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl533,739,673 - 33,782,817 (-)EnsemblGRCm38mm10GRCm38
MGSCv37534,084,001 - 34,125,353 (-)NCBIGRCm37mm9NCBIm37
MGSCv36534,058,209 - 34,099,561 (-)NCBImm8
Celera531,217,468 - 31,258,804 (-)NCBICelera
Cytogenetic Map5B2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:12466851   PMID:12477932   PMID:12865426   PMID:15489334   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:18614015   PMID:19501082   PMID:21267068   PMID:21873635   PMID:22331352   PMID:23716663   PMID:25077561   PMID:27669901   PMID:28671696   PMID:29123128   PMID:32325033  
PMID:32968282  


Genomics

Comparative Map Data
Letm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39533,897,017 - 33,940,061 (-)NCBIGRCm39mm39
GRCm39 Ensembl533,897,017 - 33,940,161 (-)Ensembl
GRCm38533,739,673 - 33,782,717 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl533,739,673 - 33,782,817 (-)EnsemblGRCm38mm10GRCm38
MGSCv37534,084,001 - 34,125,353 (-)NCBIGRCm37mm9NCBIm37
MGSCv36534,058,209 - 34,099,561 (-)NCBImm8
Celera531,217,468 - 31,258,804 (-)NCBICelera
Cytogenetic Map5B2NCBI
LETM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl41,811,479 - 1,856,156 (-)EnsemblGRCh38hg38GRCh38
GRCh3841,811,479 - 1,856,156 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3741,813,206 - 1,857,883 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3641,784,558 - 1,827,772 (-)NCBINCBI36hg18NCBI36
Build 3441,781,990 - 1,825,205NCBI
Celera41,725,718 - 1,769,826 (-)NCBI
Cytogenetic Map4p16.3NCBI
HuRef41,756,076 - 1,799,634 (-)NCBIHuRef
CHM1_141,811,156 - 1,856,557 (-)NCBICHM1_1
Letm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21476,942,647 - 76,982,220 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1476,942,729 - 76,984,904 (+)Ensembl
Rnor_6.01482,227,790 - 82,267,298 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1482,227,708 - 82,267,350 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01482,917,692 - 82,959,167 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41482,637,839 - 82,677,419 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11482,640,229 - 82,679,808 (+)NCBI
Celera1475,866,265 - 75,905,572 (+)NCBICelera
Cytogenetic Map14q21NCBI
Letm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555141,042,307 - 1,069,114 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555141,040,103 - 1,069,297 (-)NCBIChiLan1.0ChiLan1.0
LETM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.141,862,788 - 1,897,029 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl41,862,788 - 1,900,901 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v041,953,033 - 1,994,958 (-)NCBIMhudiblu_PPA_v0panPan3
LETM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1362,268,027 - 62,304,767 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl362,267,708 - 62,302,136 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha364,785,792 - 64,822,554 (+)NCBI
ROS_Cfam_1.0362,743,457 - 62,780,252 (+)NCBI
UMICH_Zoey_3.1362,237,035 - 62,273,781 (+)NCBI
UNSW_CanFamBas_1.0362,440,602 - 62,477,319 (+)NCBI
UU_Cfam_GSD_1.0362,799,711 - 62,836,516 (+)NCBI
Letm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528567,848,412 - 67,887,970 (+)NCBI
SpeTri2.0NW_00493647721,550,104 - 21,589,662 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LETM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8898,178 - 926,607 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18898,178 - 926,500 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28349,636 - 376,777 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LETM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12746,912,882 - 46,954,295 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2746,912,819 - 46,956,164 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660513,289,082 - 3,330,719 (+)NCBIVero_WHO_p1.0
Letm1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475525,604,636 - 25,631,974 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
RH124489  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38533,757,716 - 33,757,903UniSTSGRCm38
MGSCv37534,100,365 - 34,100,552UniSTSGRCm37
Celera531,233,818 - 31,234,005UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map2H3UniSTS
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10401122Pgia41_mproteoglycan induced arthritis 41 (mouse)Not determined561814634618282Mouse
15039371Nmrs21_mNAFLD-associated magnetic resonance shift 21 (mouse)5329982537299825Mouse
1301806Actd2_mactivity-distance traveled 2 (mouse)Not determined5517952239179654Mouse
4141207Imrfq1_mimmune response to Factor IX QTL 1 (mouse)Not determined5791911941919241Mouse
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5884069387693978Mouse
1357478Kdnw1_mkidney weight 1 (mouse)Not determined5886594940372526Mouse
14696730Kidlq1_mkidney weight, left QTL 1 (mouse)51340580847405808Mouse
1301685Estq2_mestradiol regulated response QTL 2 (mouse)Not determined51547674049476846Mouse
1300719Iba5_minduction of brown adipocytes 5 (mouse)Not determined52052964954529790Mouse
1301776Skts3_mskin tumor susceptibility 3 (mouse)Not determined52150995255510060Mouse
11537368Hmtb10_mhemostasis and thrombosis 10 (mouse)52189582554342976Mouse
11537367Hmtb11_mhemostasis and thrombosis 11 (mouse)52189582564649236Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526236236138457140Mouse
1300701Cd8ts1_mCD8 T cell subset 1 (mouse)Not determined52705800661058109Mouse
1301555Alcp10_malcohol preference locus 10 (mouse)Not determined53086693364867138Mouse
1301403Alcp9_malcohol preference locus 9 (mouse)Not determined53086693364867138Mouse
11353827Hplq1_mhot plate latency 1 (mouse)53141311665413116Mouse
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined31975890100630065Mouse
4141219W10q16_mweight 10 weeks QTL 16 (mouse)Not determined31975890100630065Mouse
10043995Hbnr9_mHeligmosomoides bakeri nematode resistance 9 (mouse)Not determined53333132567331534Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1667
Count of miRNA genes:738
Interacting mature miRNAs:956
Transcripts:ENSMUST00000005431, ENSMUST00000144071, ENSMUST00000148451, ENSMUST00000149886
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_019694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB041582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC162898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF061026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC046326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC055865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC061115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC061690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ178952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY110340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY243359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000005431   ⟹   ENSMUSP00000005431
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl533,897,017 - 33,940,161 (-)Ensembl
GRCm38.p6 Ensembl533,739,673 - 33,782,817 (-)Ensembl
RefSeq Acc Id: ENSMUST00000144071
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl533,926,906 - 33,927,798 (-)Ensembl
GRCm38.p6 Ensembl533,769,562 - 33,770,454 (-)Ensembl
RefSeq Acc Id: ENSMUST00000148451   ⟹   ENSMUSP00000143805
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl533,933,799 - 33,940,081 (-)Ensembl
GRCm38.p6 Ensembl533,776,455 - 33,782,737 (-)Ensembl
RefSeq Acc Id: ENSMUST00000149886
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl533,899,878 - 33,910,906 (-)Ensembl
GRCm38.p6 Ensembl533,742,534 - 33,753,562 (-)Ensembl
RefSeq Acc Id: ENSMUST00000200827   ⟹   ENSMUSP00000144491
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl533,919,056 - 33,935,988 (-)Ensembl
GRCm38.p6 Ensembl533,761,712 - 33,778,644 (-)Ensembl
RefSeq Acc Id: ENSMUST00000201981
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl533,926,707 - 33,940,058 (-)Ensembl
GRCm38.p6 Ensembl533,769,363 - 33,782,714 (-)Ensembl
RefSeq Acc Id: NM_019694   ⟹   NP_062668
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39533,897,017 - 33,940,061 (-)NCBI
GRCm38533,739,673 - 33,782,717 (-)NCBI
MGSCv37534,084,001 - 34,125,353 (-)RGD
Celera531,217,468 - 31,258,804 (-)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006504034   ⟹   XP_006504097
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39533,897,019 - 33,927,842 (-)NCBI
GRCm38533,739,675 - 33,770,546 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_062668   ⟸   NM_019694
- Peptide Label: precursor
- UniProtKB: Q9Z2I0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006504097   ⟸   XM_006504034
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000143805   ⟸   ENSMUST00000148451
RefSeq Acc Id: ENSMUSP00000005431   ⟸   ENSMUST00000005431
RefSeq Acc Id: ENSMUSP00000144491   ⟸   ENSMUST00000200827
Protein Domains
EF-hand   Letm1 RBD

Promoters
RGD ID:6886438
Promoter ID:EPDNEW_M6670
Type:multiple initiation site
Name:Letm1_1
Description:Mus musculus leucine zipper-EF-hand containing transmembraneprotein 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38533,782,717 - 33,782,777EPDNEW
RGD ID:6837788
Promoter ID:MM_KWN:41936
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000075325
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36534,113,691 - 34,114,191 (-)MPROMDB
RGD ID:6837789
Promoter ID:MM_KWN:41937
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000051047,   OTTMUST00000075323
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36534,125,161 - 34,125,661 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1932557 AgrOrtholog
Ensembl Genes ENSMUSG00000005299 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000005431 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000143805 UniProtKB/TrEMBL
  ENSMUSP00000144491 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000005431 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000148451 UniProtKB/TrEMBL
  ENSMUST00000200827 UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/Swiss-Prot
  EF_Hand_1_Ca_BS UniProtKB/Swiss-Prot
  LETM1 UniProtKB/Swiss-Prot
  LETM1/MDM38-like UniProtKB/Swiss-Prot
  LETM1_RBD UniProtKB/Swiss-Prot
KEGG Report mmu:56384 UniProtKB/Swiss-Prot
MGD MGI:1932557 ENTREZGENE
NCBI Gene 56384 ENTREZGENE
PANTHER PTHR14009 UniProtKB/Swiss-Prot
Pfam LETM1 UniProtKB/Swiss-Prot
PhenoGen Letm1 PhenoGen
PROSITE EF_HAND_1 UniProtKB/Swiss-Prot
  LETM1_RBD UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47473 UniProtKB/Swiss-Prot
UniProt A0A0J9YTQ9_MOUSE UniProtKB/TrEMBL
  A0A0J9YV52_MOUSE UniProtKB/TrEMBL
  LETM1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q5PQC5 UniProtKB/Swiss-Prot
  Q7TMK8 UniProtKB/Swiss-Prot
  Q80ZX6 UniProtKB/Swiss-Prot
  Q8CGJ3 UniProtKB/Swiss-Prot
  Q8K5E5 UniProtKB/Swiss-Prot