1700088E04Rik (RIKEN cDNA 1700088E04 gene) - Rat Genome Database

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Gene: 1700088E04Rik (RIKEN cDNA 1700088E04 gene) Mus musculus
Analyze
Symbol: 1700088E04Rik
Name: RIKEN cDNA 1700088E04 gene
RGD ID: 1553807
MGI Page MGI
Description: Is expressed in several structures, including brain; cardiovascular system; genitourinary system; gut; and respiratory system. Orthologous to human C22orf23 (chromosome 22 open reading frame 23).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ESTJ0827E04; hypothetical protein LOC27660; MGC106949; UPF0193 protein EVG1 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391579,018,855 - 79,025,451 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1579,013,549 - 79,025,453 (-)EnsemblGRCm39 Ensembl
GRCm381579,134,655 - 79,141,251 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1579,129,349 - 79,141,253 (-)EnsemblGRCm38mm10GRCm38
MGSCv371578,965,085 - 78,971,681 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361578,961,910 - 78,968,506 (-)NCBIMGSCv36mm8
Celera1581,247,373 - 81,253,965 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.7NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Comparative analyses of the Dominant megacolon-SOX10 genomic interval in mouse and human. Southard-Smith EM, etal., Mamm Genome 1999 Jul;10(7):744-9.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:11042159   PMID:11076861   PMID:12477932   PMID:16141072   PMID:16141073   PMID:24194600   PMID:38355793  


Genomics

Comparative Map Data
1700088E04Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391579,018,855 - 79,025,451 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1579,013,549 - 79,025,453 (-)EnsemblGRCm39 Ensembl
GRCm381579,134,655 - 79,141,251 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1579,129,349 - 79,141,253 (-)EnsemblGRCm38mm10GRCm38
MGSCv371578,965,085 - 78,971,681 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361578,961,910 - 78,968,506 (-)NCBIMGSCv36mm8
Celera1581,247,373 - 81,253,965 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.7NCBI
C22orf23
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382237,943,050 - 37,953,669 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2237,943,050 - 37,953,669 (-)EnsemblGRCh38hg38GRCh38
GRCh372238,339,057 - 38,349,676 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362236,669,479 - 36,679,551 (-)NCBINCBI36Build 36hg18NCBI36
Build 342236,664,032 - 36,674,103NCBI
Celera2222,141,251 - 22,151,322 (-)NCBICelera
Cytogenetic Map22q13.1NCBI
HuRef2221,305,236 - 21,315,755 (-)NCBIHuRef
CHM1_12238,297,824 - 38,308,432 (-)NCBICHM1_1
T2T-CHM13v2.02238,404,677 - 38,415,276 (-)NCBIT2T-CHM13v2.0
C7h22orf23
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87112,585,341 - 112,592,938 (-)NCBIGRCr8
mRatBN7.27110,704,894 - 110,712,485 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7110,704,894 - 110,712,487 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7112,453,522 - 112,461,138 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07114,677,053 - 114,684,666 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07114,646,367 - 114,653,964 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07120,372,874 - 120,380,465 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7120,373,352 - 120,380,200 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07120,366,953 - 120,374,280 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47117,115,146 - 117,122,727 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17117,149,376 - 117,156,957 (-)NCBI
Celera7107,039,386 - 107,046,967 (-)NCBICelera
Cytogenetic Map7q34NCBI
CUNH22orf23
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541324,291,712 - 24,300,294 (-)NCBIChiLan1.0ChiLan1.0
C23H22orf23
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22347,786,408 - 47,812,178 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12250,477,554 - 50,500,557 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02218,846,688 - 18,868,886 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12236,685,710 - 36,695,308 (-)NCBIpanpan1.1PanPan1.1panPan2
C10H22orf23
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11026,707,503 - 26,714,808 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1026,707,506 - 26,714,823 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1026,662,446 - 26,669,748 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01027,499,234 - 27,506,538 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1027,499,249 - 27,506,553 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11027,219,075 - 27,229,546 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01027,530,571 - 27,541,174 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01027,707,968 - 27,715,273 (+)NCBIUU_Cfam_GSD_1.0
CUNH22orf23
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494510,186,367 - 10,192,184 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364923,196,828 - 3,202,593 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C5H22orf23
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl59,917,781 - 9,924,662 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.159,917,786 - 9,924,664 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.257,316,057 - 7,322,964 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH22orf23
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11920,646,735 - 20,654,434 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1920,647,178 - 20,653,937 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045105,122,031 - 105,133,805 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH22orf23
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247529,988,497 - 9,998,734 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247529,988,157 - 9,996,133 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in 1700088E04Rik
191 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:219
Count of miRNA genes:185
Interacting mature miRNAs:200
Transcripts:ENSMUST00000169604
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570345653104073951Mouse
38501067Tip3_mtuberculosis immunophenotype 3, IFN-g level (mouse)155356339689584203Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15692948184584201Mouse
15092079Igly6_mIgG glycosylation 6, GP6 (mouse)157410054082674156Mouse
1558786Msq1_mMAV-1 susceptibility QTL 1 (mouse)Not determined156338964681086436Mouse
13504731Cath5_mcarotid atherosclerosis 5 (mouse)155478912988789129Mouse
15092080Igly7_mIgG glycosylation 7, GP10 (mouse)157779491982674156Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573430144104073951Mouse
1301006Hfib1_mhepatic fibrogenesis 1 (mouse)Not determined154730633481306479Mouse
27095936Ulnl4_mulna length 4, 5 week (mouse)155676339687684201Mouse
10755515Amzn3_manatomical modifier of Zfp423 3 (mouse)154638964680389845Mouse
1301171Brm2_mbrachyury modifier 2 (mouse)Not determined156552537699525499Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564306334103425899Mouse
1301429Pcir3_mperiosteal circumference 3 (mouse)Not determined154846536282465496Mouse
1357756Alaa4_malopecia areata 4 (mouse)Not determined154638964680389845Mouse
26884402Cvht9_mcranial vault height 9, 16 week (mouse)154216339695497881Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556186708103425899Mouse
1301433Rapop5_mradiation-induced apoptosis 5 (mouse)Not determined15927302279474762Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548363396101708435Mouse
26884397Humsd5_mhumerus midshaft diameter 5, 10 week (mouse)154836339698397881Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570349271104073951Mouse
10412067Pain2_mpain 2 (mouse)Not determined155164533985645626Mouse
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
4142198Hbtq_mhabituation QTL (mouse)Not determined155116070885160833Mouse
1357407Pfat4_mpredicted fat percentage 4 (mouse)8.6Body fat amountpredicted fat percentage155711700591117153Mouse
14928306Manh79_mmandible shape 79 (mouse)1578847557104073951Mouse
1357894Epfpq3_mepididymal fat percentage QTL 3 (mouse)Not determined1578601103102901704Mouse
1302080Szs13_mseizure susceptibility 13 (mouse)Not determined155168583285694449Mouse
1300800Ses3_msalmonella enteritidis susceptibility 3 (mouse)Not determined155711700591117153Mouse
4142060W3q6_mweight 3 weeks QTL 6 (mouse)Not determined78601103102901704Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
10045637Heal27_mwound healing/regeneration 29 (mouse)Not determined155141836185418511Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
4141921Pstc3_mperiosteal circumference 3 (mouse)Not determined1567270698101270847Mouse
1301708Cocrb14_mcocaine related behavior 14 (mouse)Not determined155180651585806651Mouse
12880411V125Dq11_mvitamin D active form serum level QTL 11 (mouse)1578897881104073951Mouse
1300851Heal4_mwound healing/regeneration 4 (mouse)Not determined1577527592104073951Mouse
12880420V25Dq8_mvitamin D inactive form serum level QTL 8 (mouse)156158420095584200Mouse
1302002Cocia2_mcocaine induced activation 2 (mouse)Not determined157237245979899178Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572382669104073951Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570349271104073951Mouse
1301119Drb7_mdopamine receptor binding 7 (mouse)Not determined156533657899341028Mouse
4141135Cia35_mcollagen induced arthritis 35 (mouse)Not determined156481182698811946Mouse
13442492Mecth2_mmechanosensation threshold 2 (mouse)157466284979387201Mouse
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15612948186684201Mouse
1301601Faq9_mfluctuating asymmetry QTL 9 (mouse)Not determined156316390397163995Mouse
1301472Pain1_mpain 1 (mouse)Not determined157532084690813185Mouse
27226729Tibmd2_mtibia midshaft diameter 2, 5 week (mouse)153800024486684201Mouse
1301860Gct3_mgranulosa cell tumorigenesis 3 (mouse)Not determined154740959681409691Mouse

Markers in Region
D15Mit260  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381579,135,542 - 79,135,768UniSTSGRCm38
MGSCv371578,965,972 - 78,966,198UniSTSGRCm37
Celera1581,248,260 - 81,248,486UniSTS
Cytogenetic Map15E1UniSTS
cM Map1546.6UniSTS
Whitehead Genetic1535.0UniSTS
Whitehead_YAC15 UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001310576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001310579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001310581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_138581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA008475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK006539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK007028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL589670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL591921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB602239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC068203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC096672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC116891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC116893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC144714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC144715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ175214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000169604   ⟹   ENSMUSP00000129244
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1579,018,861 - 79,025,453 (-)Ensembl
GRCm38.p6 Ensembl1579,134,661 - 79,141,253 (-)Ensembl
Ensembl Acc Id: ENSMUST00000185944
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1579,013,549 - 79,019,116 (-)Ensembl
GRCm38.p6 Ensembl1579,129,349 - 79,134,916 (-)Ensembl
Ensembl Acc Id: ENSMUST00000186053   ⟹   ENSMUSP00000140261
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1579,021,623 - 79,025,453 (-)Ensembl
GRCm38.p6 Ensembl1579,137,423 - 79,141,253 (-)Ensembl
Ensembl Acc Id: ENSMUST00000186459   ⟹   ENSMUSP00000139974
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1579,021,332 - 79,025,403 (-)Ensembl
GRCm38.p6 Ensembl1579,137,132 - 79,141,203 (-)Ensembl
Ensembl Acc Id: ENSMUST00000186559
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1579,019,209 - 79,020,913 (-)Ensembl
GRCm38.p6 Ensembl1579,135,009 - 79,136,713 (-)Ensembl
Ensembl Acc Id: ENSMUST00000187550   ⟹   ENSMUSP00000140978
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1579,018,855 - 79,025,387 (-)Ensembl
GRCm38.p6 Ensembl1579,134,655 - 79,141,187 (-)Ensembl
Ensembl Acc Id: ENSMUST00000188562   ⟹   ENSMUSP00000139947
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1579,019,256 - 79,025,405 (-)Ensembl
GRCm38.p6 Ensembl1579,135,056 - 79,141,205 (-)Ensembl
Ensembl Acc Id: ENSMUST00000189761   ⟹   ENSMUSP00000139736
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1579,019,282 - 79,025,382 (-)Ensembl
GRCm38.p6 Ensembl1579,135,082 - 79,141,182 (-)Ensembl
Ensembl Acc Id: ENSMUST00000190400   ⟹   ENSMUSP00000141080
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1579,021,625 - 79,025,178 (-)Ensembl
GRCm38.p6 Ensembl1579,137,425 - 79,140,978 (-)Ensembl
Ensembl Acc Id: ENSMUST00000190509   ⟹   ENSMUSP00000140611
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1579,019,192 - 79,025,430 (-)Ensembl
GRCm38.p6 Ensembl1579,134,992 - 79,141,230 (-)Ensembl
Ensembl Acc Id: ENSMUST00000190730   ⟹   ENSMUSP00000139884
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1579,019,217 - 79,025,434 (-)Ensembl
GRCm38.p6 Ensembl1579,135,017 - 79,141,234 (-)Ensembl
Ensembl Acc Id: ENSMUST00000190959   ⟹   ENSMUSP00000140347
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1579,018,855 - 79,025,439 (-)Ensembl
GRCm38.p6 Ensembl1579,134,655 - 79,141,239 (-)Ensembl
Ensembl Acc Id: ENSMUST00000191006   ⟹   ENSMUSP00000141129
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1579,021,620 - 79,023,475 (-)Ensembl
GRCm38.p6 Ensembl1579,137,420 - 79,139,275 (-)Ensembl
RefSeq Acc Id: NM_001310576   ⟹   NP_001297505
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391579,018,855 - 79,025,451 (-)NCBI
GRCm381579,134,655 - 79,141,251 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001310579   ⟹   NP_001297508
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391579,018,855 - 79,025,451 (-)NCBI
GRCm381579,134,655 - 79,141,251 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001310581   ⟹   NP_001297510
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391579,018,855 - 79,025,451 (-)NCBI
GRCm381579,134,655 - 79,141,251 (-)NCBI
Sequence:
RefSeq Acc Id: NM_138581   ⟹   NP_613047
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391579,018,855 - 79,025,451 (-)NCBI
GRCm381579,134,655 - 79,141,251 (-)ENTREZGENE
MGSCv371578,965,085 - 78,971,681 (-)RGD
Celera1581,247,373 - 81,253,965 (-)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_613047   ⟸   NM_138581
- Peptide Label: isoform 1
- UniProtKB: Q9D9S1 (UniProtKB/Swiss-Prot),   Q14AC9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001297505   ⟸   NM_001310576
- Peptide Label: isoform 2
- UniProtKB: A0A087WRF9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001297508   ⟸   NM_001310579
- Peptide Label: isoform 3
- UniProtKB: Q4V9V4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001297510   ⟸   NM_001310581
- Peptide Label: isoform 4
- UniProtKB: B7ZMP0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000139974   ⟸   ENSMUST00000186459
Ensembl Acc Id: ENSMUSP00000141129   ⟸   ENSMUST00000191006
Ensembl Acc Id: ENSMUSP00000140261   ⟸   ENSMUST00000186053
Ensembl Acc Id: ENSMUSP00000139884   ⟸   ENSMUST00000190730
Ensembl Acc Id: ENSMUSP00000140347   ⟸   ENSMUST00000190959
Ensembl Acc Id: ENSMUSP00000141080   ⟸   ENSMUST00000190400
Ensembl Acc Id: ENSMUSP00000140611   ⟸   ENSMUST00000190509
Ensembl Acc Id: ENSMUSP00000139947   ⟸   ENSMUST00000188562
Ensembl Acc Id: ENSMUSP00000140978   ⟸   ENSMUST00000187550
Ensembl Acc Id: ENSMUSP00000129244   ⟸   ENSMUST00000169604
Ensembl Acc Id: ENSMUSP00000139736   ⟸   ENSMUST00000189761

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D9S1-F1-model_v2 AlphaFold Q9D9S1 1-216 view protein structure

Promoters
RGD ID:6847155
Promoter ID:MM_ACW:18652
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:1700088E04RIK.BSEP07,   1700088E04RIK.FSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361578,966,639 - 78,967,139 (-)MPROMDB
RGD ID:6826358
Promoter ID:MM_KWN:19044
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000040077,   ENSMUST00000040146,   NM_138581,   UC007WSR.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361578,971,584 - 78,972,084 (+)MPROMDB
RGD ID:8684318
Promoter ID:EPDNEW_M20190
Type:initiation region
Name:1700088E04Rik_1
Description:Mus musculus RIKEN cDNA 1700088E04 gene , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381579,141,252 - 79,141,312EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1920774 AgrOrtholog
Ensembl Genes ENSMUSG00000033029 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000169604 ENTREZGENE
  ENSMUST00000169604.8 UniProtKB/Swiss-Prot
  ENSMUST00000186053.7 UniProtKB/TrEMBL
  ENSMUST00000186459.7 UniProtKB/TrEMBL
  ENSMUST00000187550.7 UniProtKB/TrEMBL
  ENSMUST00000188562.7 UniProtKB/TrEMBL
  ENSMUST00000189761.7 UniProtKB/TrEMBL
  ENSMUST00000190400.2 UniProtKB/TrEMBL
  ENSMUST00000190509 ENTREZGENE
  ENSMUST00000190509.7 UniProtKB/TrEMBL
  ENSMUST00000190730 ENTREZGENE
  ENSMUST00000190730.7 UniProtKB/TrEMBL
  ENSMUST00000190959.7 UniProtKB/Swiss-Prot
  ENSMUST00000191006.2 UniProtKB/TrEMBL
InterPro UPF0193 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:27660 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1920774 ENTREZGENE
NCBI Gene 1700088E04Rik ENTREZGENE
PANTHER PTHR28348 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UPF0193 PROTEIN EVG1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam UPF0193 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen 1700088E04Rik PhenoGen
UniProt A0A087WPE0_MOUSE UniProtKB/TrEMBL
  A0A087WPW6_MOUSE UniProtKB/TrEMBL
  A0A087WPZ1_MOUSE UniProtKB/TrEMBL
  A0A087WQM6_MOUSE UniProtKB/TrEMBL
  A0A087WRF9 ENTREZGENE, UniProtKB/TrEMBL
  A0A087WSK0_MOUSE UniProtKB/TrEMBL
  A0A087WSP2_MOUSE UniProtKB/TrEMBL
  B7ZMP0 ENTREZGENE, UniProtKB/TrEMBL
  EVG1_MOUSE UniProtKB/Swiss-Prot
  Q14AC9 ENTREZGENE, UniProtKB/TrEMBL
  Q4V9V4 ENTREZGENE, UniProtKB/TrEMBL
  Q6NVB8_MOUSE UniProtKB/TrEMBL
  Q9D9S1 ENTREZGENE