Cdk5r1 (cyclin-dependent kinase 5, regulatory subunit 1 (p35)) - Rat Genome Database
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Gene: Cdk5r1 (cyclin-dependent kinase 5, regulatory subunit 1 (p35)) Mus musculus
Analyze
Symbol: Cdk5r1
Name: cyclin-dependent kinase 5, regulatory subunit 1 (p35)
RGD ID: 1553698
MGI Page MGI
Description: Is expressed in several structures, including alimentary system; genitourinary system; integumental system; nervous system; and sensory organ. Used to study attention deficit hyperactivity disorder. Human ortholog(s) of this gene implicated in Alzheimer's disease. Orthologous to human CDK5R1 (cyclin dependent kinase 5 regulatory subunit 1); PARTICIPATES IN Reelin signaling pathway; Alzheimer's disease pathway; INTERACTS WITH 1,2-dimethylhydrazine; 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: CDK5 activator 1; Cdk5r; cyclin-dependent kinase 5 activator 1; cyclin-dependent kinase 5 regulatory subunit 1; cyclin-dependent kinase 5, regulatory subunit (p35) 1; D11Bwg0379e; p2; p25; p3; p35; TPKII regulatory subunit
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391180,367,849 - 80,372,010 (+)NCBIGRCm39mm39
GRCm39 Ensembl1180,367,849 - 80,372,010 (+)Ensembl
GRCm381180,477,023 - 80,481,184 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1180,477,023 - 80,481,184 (+)EnsemblGRCm38mm10GRCm38
MGSCv371180,290,548 - 80,294,681 (+)NCBIGRCm37mm9NCBIm37
MGSCv361180,293,241 - 80,297,376 (+)NCBImm8
Celera1190,115,053 - 90,119,186 (+)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1147.94NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(S)-amphetamine  (ISO)
1,2-dimethylhydrazine  (EXP)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
anthra[1,9-cd]pyrazol-6(2H)-one  (EXP)
antirheumatic drug  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (EXP,ISO)
bisphenol A  (ISO)
bisphenol F  (EXP)
calcium atom  (ISO)
calcium(0)  (ISO)
Calpeptin  (ISO)
cannabidiol  (EXP)
clozapine  (EXP)
cobalt dichloride  (ISO)
cocaine  (EXP,ISO)
copper atom  (ISO)
copper(0)  (ISO)
dexmedetomidine  (ISO)
diarsenic trioxide  (ISO)
diclofenac  (ISO)
diiodine  (ISO)
disodium selenite  (ISO)
disulfiram  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
ethanol  (EXP)
ethyl methanesulfonate  (ISO)
formaldehyde  (ISO)
gamma-tocopherol  (EXP)
ionomycin  (ISO)
lead diacetate  (EXP)
maneb  (EXP)
mercury atom  (ISO)
mercury(0)  (ISO)
metformin  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
methylmercury(1+)  (ISO)
methylphenidate  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
N-methyl-N-nitrosourea  (ISO)
nickel atom  (ISO)
ochratoxin A  (ISO)
paclitaxel  (ISO)
paraquat  (EXP)
phencyclidine  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP)
potassium chromate  (ISO)
propofol  (ISO)
quercetin  (ISO)
raloxifene  (ISO)
resveratrol  (EXP,ISO)
rimonabant  (EXP)
SB 203580  (EXP)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
tamoxifen  (ISO)
tocopherol  (EXP)
tributylstannane  (ISO)
Tributyltin oxide  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (EXP)
tungsten  (EXP)
tunicamycin  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal axon extension  (IAGP)
abnormal behavioral response to xenobiotic  (IAGP)
abnormal cerebellar molecular layer  (IAGP)
abnormal cerebellum development  (IAGP)
abnormal cerebellum external granule cell layer morphology  (IAGP)
abnormal cerebellum morphology  (IAGP)
abnormal cerebral cortex morphology  (IAGP)
abnormal cerebral cortex pyramidal cell morphology  (IAGP)
abnormal cortical marginal zone morphology  (IAGP)
abnormal cortical plate morphology  (IAGP)
abnormal dentate gyrus morphology  (IAGP)
abnormal excitatory postsynaptic potential  (IAGP)
abnormal forebrain development  (IAGP)
abnormal forebrain morphology  (IAGP)
abnormal hippocampus granule cell morphology  (IAGP)
abnormal hippocampus layer morphology  (IAGP)
abnormal hippocampus morphology  (IAGP)
abnormal hippocampus pyramidal cell morphology  (IAGP)
abnormal innervation  (IAGP)
abnormal long term depression  (IAGP)
abnormal motor neuron morphology  (IAGP)
abnormal neuron differentiation  (IAGP)
abnormal olfactory bulb development  (IAGP)
abnormal physiological response to xenobiotic  (IAGP)
abnormal sensitization to xenobiotic  (IAGP)
abnormal spatial learning  (IAGP)
abnormal stratification in cerebral cortex  (IAGP)
abnormal striatum morphology  (IAGP)
abnormal subplate morphology  (IAGP)
absent cerebellar foliation  (IAGP)
absent long term depression  (IAGP)
absent Purkinje cell layer  (IAGP)
amyloid beta deposits  (IAGP)
chromatolysis  (IAGP)
decreased corpus callosum size  (IAGP)
decreased embryo size  (IAGP)
decreased striatum size  (IAGP)
delaminated Purkinje cell layer  (IAGP)
dilated lateral ventricles  (IAGP)
ectopic cerebellar granule cells  (IAGP)
ectopic Purkinje cell  (IAGP)
hyperactivity  (IAGP)
impaired coordination  (IAGP)
impaired synaptic plasticity  (IAGP)
increased cellular glucose import  (IAGP)
increased serotonin level  (IAGP)
increased susceptibility to pharmacologically induced seizures  (IAGP)
increased thermal nociceptive threshold  (IAGP)
perinatal lethality, incomplete penetrance  (IAGP)
premature death  (IAGP)
reduced long term depression  (IAGP)
reduced long term potentiation  (IAGP)
seizures  (IAGP)
slow extinction of fear memory  (IAGP)
small cerebellum  (IAGP)
thin cortical plate  (IAGP)
unresponsive to tactile stimuli  (IAGP)
weakness  (IAGP)
References

Additional References at PubMed
PMID:8090221   PMID:8661152   PMID:8889548   PMID:9010203   PMID:9438340   PMID:9619503   PMID:9655938   PMID:10349636   PMID:10403203   PMID:10545161   PMID:10557205   PMID:10753743  
PMID:10830966   PMID:10896159   PMID:11042159   PMID:11076861   PMID:11157084   PMID:11217851   PMID:11226314   PMID:11239428   PMID:11276227   PMID:11517264   PMID:11859196   PMID:11882646  
PMID:11932941   PMID:11965495   PMID:12019323   PMID:12084709   PMID:12130536   PMID:12223541   PMID:12477932   PMID:12496365   PMID:12516540   PMID:12545171   PMID:12684463   PMID:12859671  
PMID:12887424   PMID:12950086   PMID:14608361   PMID:14627648   PMID:14642273   PMID:14681479   PMID:14724258   PMID:14985430   PMID:15009685   PMID:15055521   PMID:15096606   PMID:15123626  
PMID:15226823   PMID:15240808   PMID:15471880   PMID:15483119   PMID:15489224   PMID:15489334   PMID:15492003   PMID:15665076   PMID:15846791   PMID:15908038   PMID:15978013   PMID:15992381  
PMID:16141072   PMID:16141073   PMID:16166266   PMID:16407116   PMID:16407541   PMID:16432194   PMID:16525053   PMID:16600913   PMID:16602821   PMID:16766706   PMID:17143272   PMID:17148953  
PMID:17209049   PMID:17295212   PMID:17341134   PMID:17416967   PMID:17517623   PMID:17529984   PMID:17591690   PMID:17610816   PMID:17646384   PMID:18054859   PMID:18076569   PMID:18325333  
PMID:18385322   PMID:18494254   PMID:18507738   PMID:18599437   PMID:18690213   PMID:18786638   PMID:18794345   PMID:19008461   PMID:19017796   PMID:19037081   PMID:19049962   PMID:19062175  
PMID:19118186   PMID:19156541   PMID:19306359   PMID:19362124   PMID:19638632   PMID:19655386   PMID:19812325   PMID:19965374   PMID:20097924   PMID:20130526   PMID:20211702   PMID:20392944  
PMID:20403084   PMID:20492361   PMID:20573893   PMID:20624590   PMID:20724472   PMID:20830735   PMID:20832057   PMID:20839922   PMID:20863901   PMID:20977891   PMID:21566658   PMID:21635231  
PMID:21849563   PMID:21944720   PMID:22262481   PMID:22262900   PMID:22573681   PMID:22612821   PMID:23064382   PMID:23085039   PMID:23681253   PMID:24085300   PMID:24142862   PMID:24353748  
PMID:24561619   PMID:24637538   PMID:24802945   PMID:24872417   PMID:24877974   PMID:24952961   PMID:25329792   PMID:25331900   PMID:25404232   PMID:25404468   PMID:25500740   PMID:25694605  
PMID:25864429   PMID:25878277   PMID:25964330   PMID:25995364   PMID:26027726   PMID:26602020   PMID:26631721   PMID:26961956   PMID:26998748   PMID:27178982   PMID:27402274   PMID:27479491  
PMID:27480591   PMID:27601478   PMID:28391013   PMID:28912154   PMID:29352128   PMID:29867369   PMID:30021166   PMID:31256130   PMID:31421203  


Genomics

Comparative Map Data
Cdk5r1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391180,367,849 - 80,372,010 (+)NCBIGRCm39mm39
GRCm39 Ensembl1180,367,849 - 80,372,010 (+)Ensembl
GRCm381180,477,023 - 80,481,184 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1180,477,023 - 80,481,184 (+)EnsemblGRCm38mm10GRCm38
MGSCv371180,290,548 - 80,294,681 (+)NCBIGRCm37mm9NCBIm37
MGSCv361180,293,241 - 80,297,376 (+)NCBImm8
Celera1190,115,053 - 90,119,186 (+)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1147.94NCBI
CDK5R1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1732,486,993 - 32,491,253 (+)EnsemblGRCh38hg38GRCh38
GRCh381732,485,028 - 32,491,256 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371730,814,011 - 30,818,271 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361727,838,218 - 27,842,384 (+)NCBINCBI36hg18NCBI36
Build 341727,838,217 - 27,842,383NCBI
Celera1727,724,307 - 27,728,473 (+)NCBI
Cytogenetic Map17q11.2NCBI
HuRef1727,000,601 - 27,004,486 (+)NCBIHuRef
CHM1_11730,876,567 - 30,880,733 (+)NCBICHM1_1
Cdk5r1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21065,484,266 - 65,485,467 (+)NCBI
Rnor_6.0 Ensembl1067,862,054 - 67,863,255 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01067,862,054 - 67,863,255 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01067,515,764 - 67,516,965 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41068,715,844 - 68,717,045 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11068,729,476 - 68,730,668 (+)NCBI
Celera1064,442,587 - 64,443,788 (+)NCBICelera
Cytogenetic Map10q26NCBI
Cdk5r1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554817,408,205 - 7,409,128 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554817,408,089 - 7,411,813 (+)NCBIChiLan1.0ChiLan1.0
CDK5R1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11724,575,561 - 24,579,226 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1724,577,537 - 24,579,232 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01724,285,069 - 24,289,311 (-)NCBIMhudiblu_PPA_v0panPan3
CDK5R1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl940,501,646 - 40,502,569 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1940,481,111 - 40,502,689 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Cdk5r1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365382,411,194 - 2,415,106 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDK5R1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1242,493,321 - 42,494,659 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11242,456,063 - 42,494,494 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21244,209,897 - 44,253,700 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CDK5R1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11626,044,751 - 26,048,920 (+)NCBI
ChlSab1.1 Ensembl1626,045,061 - 26,049,101 (+)Ensembl
Cdk5r1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624875538,752 - 542,874 (+)NCBI

Position Markers
RH125141  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381180,480,382 - 80,480,486UniSTSGRCm38
MGSCv371180,293,884 - 80,293,988UniSTSGRCm37
Celera1190,118,389 - 90,118,493UniSTS
Cytogenetic Map11B5UniSTS
cM Map1146.5UniSTS
Cdk5r1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381180,477,424 - 80,478,538UniSTSGRCm38
MGSCv371180,290,926 - 80,292,040UniSTSGRCm37
Celera1190,115,431 - 90,116,545UniSTS
Cytogenetic Map11B5UniSTS
cM Map1146.5UniSTS
PMC30213P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381180,477,869 - 80,478,529UniSTSGRCm38
MGSCv371180,291,371 - 80,292,031UniSTSGRCm37
Celera1190,115,876 - 90,116,536UniSTS
Cytogenetic Map11B5UniSTS
cM Map1146.5UniSTS
CDK5R1_1797  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381180,477,688 - 80,478,520UniSTSGRCm38
MGSCv371180,291,190 - 80,292,022UniSTSGRCm37
Celera1190,115,695 - 90,116,527UniSTS
Cytogenetic Map11B5UniSTS
cM Map1146.5UniSTS
D11Bwg0379e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381180,480,338 - 80,480,495UniSTSGRCm38
MGSCv371180,293,840 - 80,293,997UniSTSGRCm37
Celera1190,118,345 - 90,118,502UniSTS
Cytogenetic Map11B5UniSTS
cM Map1145.0UniSTS
cM Map1146.5UniSTS
D11Bwg0379e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381180,480,250 - 80,480,491UniSTSGRCm38
MGSCv371180,293,752 - 80,293,993UniSTSGRCm37
Celera1190,118,257 - 90,118,498UniSTS
Cytogenetic Map11B5UniSTS
cM Map1145.0UniSTS
cM Map1146.5UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5882844085175703Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116179599488808902Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116226517996265327Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116342858181939647Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116342858194173092Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116493951098939647Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116493951098939647Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116493951098939647Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166842594100842826Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166842594100842826Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66842594100842826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166842594100842826Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166842594100842826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166842594100842826Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168300000102000000Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170800372104800540Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170800372104800540Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170800372104800540Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170800372104800540Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172128823106128908Mouse
1301078Alcp2_malcohol preference locus 2 (mouse)Not determined117231897084840636Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172835299106835463Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172927789106927907Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172927789106927907Mouse
12903994Opfaq3_mopen field activity QTL 3 (mouse)117384671582178599Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177172953111173092Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177546357111546496Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177546357111546496Mouse
4141365Ltxs3_mlethal factor toxin susceptibility 3 (mouse)Not determined117768304780855532Mouse
1302124Eae7_msusceptibility to experimental allergic encephalomyelitis 7 (mouse)Not determined117768304799486994Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177880152111880273Mouse
1301640Lore4_mloss of righting induced by ethanol 4 (mouse)Not determined1179265183107725646Mouse
14746970Manh71_mmandible shape 71 (mouse)1179525431113525431Mouse
10043865T2dm5sa_mtype 2 diabetes mellitus 5 in SMXA RI mice (mouse)Not determined1179922933104611872Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1340
Count of miRNA genes:666
Interacting mature miRNAs:826
Transcripts:ENSMUST00000053413, ENSMUST00000147694
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_009871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF121847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK043203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK079557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK086621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK142868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL591146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC046823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC050768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S82819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U89527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y11335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000053413   ⟹   ENSMUSP00000099514
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1180,477,023 - 80,481,184 (+)Ensembl
RefSeq Acc Id: ENSMUST00000147694   ⟹   ENSMUSP00000120964
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1180,477,056 - 80,477,923 (+)Ensembl
RefSeq Acc Id: NM_009871   ⟹   NP_034001
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391180,367,849 - 80,372,010 (+)NCBI
GRCm381180,477,023 - 80,481,184 (+)NCBI
MGSCv371180,290,548 - 80,294,681 (+)RGD
Celera1190,115,053 - 90,119,186 (+)RGD
cM Map11 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_034001   ⟸   NM_009871
- UniProtKB: P61809 (UniProtKB/Swiss-Prot),   Q542T9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000120964   ⟸   ENSMUST00000147694
RefSeq Acc Id: ENSMUSP00000099514   ⟸   ENSMUST00000053413

Promoters
RGD ID:6820600
Promoter ID:MM_KWN:8816
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Lung,   MEF_B6
Transcripts:ENSMUST00000116355,   NM_009871
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361180,289,866 - 80,294,307 (+)MPROMDB
RGD ID:8675804
Promoter ID:EPDNEW_M15933
Type:initiation region
Name:Cdk5r1_1
Description:Mus musculus cyclin-dependent kinase 5, regulatory subunit 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381180,477,046 - 80,477,106EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:101764 AgrOrtholog
Ensembl Genes ENSMUSG00000048895 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000099514 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000120964 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000053413 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000147694 UniProtKB/TrEMBL
InterPro CDK5_activator UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyclin-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12569 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:101764 ENTREZGENE
NCBI Gene 12569 ENTREZGENE
PANTHER PTHR23401 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CDK5_activator UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cdk5r1 PhenoGen
PIRSF Cdk5_activator UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47954 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B1AQH0_MOUSE UniProtKB/TrEMBL
  CD5R1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3V3I8_MOUSE UniProtKB/TrEMBL
  Q542T9 ENTREZGENE, UniProtKB/TrEMBL
  Q8BJD8_MOUSE UniProtKB/TrEMBL
  Q8BKY0_MOUSE UniProtKB/TrEMBL
  Q8BLT0_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q62938 UniProtKB/Swiss-Prot