Fgf13 (fibroblast growth factor 13) - Rat Genome Database

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Gene: Fgf13 (fibroblast growth factor 13) Mus musculus
Analyze
Symbol: Fgf13
Name: fibroblast growth factor 13
RGD ID: 1553609
MGI Page MGI
Description: Enables sodium channel regulator activity; transmembrane transporter binding activity; and tubulin binding activity. Involved in several processes, including learning or memory; nervous system development; and regulation of cardiac muscle cell action potential involved in regulation of contraction. Located in several cellular components, including growth cone; intercalated disc; and lateral plasma membrane. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; peripheral nervous system; and sensory organ. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy. Orthologous to human FGF13 (fibroblast growth factor 13); PARTICIPATES IN melanoma pathway; mitogen activated protein kinase signaling pathway; INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 3,4-methylenedioxymethamphetamine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: FGF-13; Fgf1c; FHF-2; Fhf2; fibroblast growth factor 1c; fibroblast growth factor homologous factor 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X58,107,499 - 58,630,932 (-)NCBIGRCm39mm39
GRCm39 EnsemblX58,107,505 - 58,613,431 (-)Ensembl
GRCm38X59,062,139 - 59,585,572 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX59,062,145 - 59,568,071 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X56,315,327 - 56,387,613 (-)NCBIGRCm37mm9NCBIm37
MGSCv36X55,408,934 - 55,481,220 (-)NCBImm8
CeleraX45,524,338 - 45,596,524 (-)NCBICelera
Cytogenetic MapXA6NCBI
cM MapX33.31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:8790420   PMID:8889548   PMID:9232594   PMID:10349636   PMID:10644718   PMID:11042159   PMID:11076861   PMID:11165488   PMID:11217851   PMID:11900978   PMID:12421715   PMID:12466851  
PMID:12477932   PMID:12666204   PMID:14517998   PMID:14681479   PMID:15140207   PMID:16123981   PMID:16141072   PMID:16141073   PMID:16632597   PMID:16818445   PMID:17697936   PMID:18565740  
PMID:20040496   PMID:20679355   PMID:21677750   PMID:21734270   PMID:21817159   PMID:21873635   PMID:21876757   PMID:22682244   PMID:22726441   PMID:23603273   PMID:23804213   PMID:24198358  
PMID:26063919   PMID:26230950   PMID:26748348   PMID:27044086   PMID:27701382   PMID:27916441   PMID:28119060   PMID:28162808   PMID:28461495   PMID:28882890   PMID:29031500   PMID:29059154  
PMID:30037926   PMID:30228991   PMID:30679375   PMID:31339804   PMID:31341204   PMID:32325033   PMID:32962518   PMID:33172979  


Genomics

Comparative Map Data
Fgf13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X58,107,499 - 58,630,932 (-)NCBIGRCm39mm39
GRCm39 EnsemblX58,107,505 - 58,613,431 (-)Ensembl
GRCm38X59,062,139 - 59,585,572 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX59,062,145 - 59,568,071 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X56,315,327 - 56,387,613 (-)NCBIGRCm37mm9NCBIm37
MGSCv36X55,408,934 - 55,481,220 (-)NCBImm8
CeleraX45,524,338 - 45,596,524 (-)NCBICelera
Cytogenetic MapXA6NCBI
cM MapX33.31NCBI
FGF13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX138,614,727 - 139,222,777 (-)EnsemblGRCh38hg38GRCh38
GRCh38X138,614,727 - 139,222,889 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X137,696,888 - 138,287,185 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X137,541,401 - 137,649,181 (-)NCBINCBI36hg18NCBI36
Build 34X137,439,254 - 137,547,035NCBI
CeleraX138,079,723 - 138,653,021 (-)NCBI
Cytogenetic MapXq26.3-q27.1NCBI
HuRefX126,980,049 - 127,553,217 (-)NCBIHuRef
CHM1_1X137,624,856 - 138,198,651 (-)NCBICHM1_1
Fgf13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X137,276,498 - 137,800,056 (-)NCBImRatBN7.2
Rnor_6.0 EnsemblX142,053,654 - 142,248,369 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0X142,053,648 - 142,589,274 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X142,078,572 - 142,607,520 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X144,199,534 - 144,533,485 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1X144,272,969 - 144,606,918 (-)NCBI
CeleraX133,376,309 - 133,487,079 (-)NCBICelera
Cytogenetic MapXq36NCBI
Fgf13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554896,123,633 - 6,621,692 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554896,122,707 - 6,621,624 (+)NCBIChiLan1.0ChiLan1.0
FGF13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X138,023,010 - 138,610,952 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX138,023,016 - 138,103,217 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X127,764,648 - 128,353,928 (-)NCBIMhudiblu_PPA_v0panPan3
FGF13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X108,658,113 - 109,156,096 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX108,658,941 - 109,156,594 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX94,485,065 - 95,008,516 (-)NCBI
ROS_Cfam_1.0X110,643,849 - 111,167,345 (-)NCBI
UMICH_Zoey_3.1X107,778,374 - 108,301,828 (-)NCBI
UNSW_CanFamBas_1.0X109,963,120 - 110,485,873 (-)NCBI
UU_Cfam_GSD_1.0X109,612,364 - 110,135,626 (-)NCBI
Fgf13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X106,703,626 - 107,193,786 (-)NCBI
SpeTri2.0NW_0049365138,419,588 - 8,911,010 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FGF13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX113,460,191 - 113,932,715 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X113,460,191 - 113,955,691 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X129,613,586 - 129,689,377 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FGF13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X113,683,688 - 114,256,728 (-)NCBI
ChlSab1.1 EnsemblX113,684,967 - 113,906,176 (-)Ensembl
Vero_WHO_p1.0NW_02366606551,381,406 - 51,958,349 (-)NCBI
Fgf13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248087,577,422 - 8,091,216 (+)NCBI

Position Markers
G67062  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X59,550,577 - 59,551,051UniSTSGRCm38
MGSCv37X56,803,754 - 56,804,228UniSTSGRCm37
CeleraX46,002,457 - 46,002,931UniSTS
Cytogenetic MapXA6UniSTS
cM MapX18.0UniSTS
DXMit141  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X59,431,700 - 59,431,843UniSTSGRCm38
MGSCv37X56,684,877 - 56,685,020UniSTSGRCm37
CeleraX45,884,621 - 45,884,765UniSTS
Cytogenetic MapXA6UniSTS
cM MapX19.0UniSTS
Whitehead GeneticX20.8UniSTS
Fgf13  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv37X56,315,733 - 56,316,722UniSTSGRCm37
Cytogenetic MapXA6UniSTS
cM MapX18.0UniSTS
cM MapX18.0UniSTS
px-48h5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X59,474,285 - 59,474,552UniSTSGRCm38
MGSCv37X56,727,462 - 56,727,729UniSTSGRCm37
CeleraX45,926,646 - 45,926,913UniSTS
Cytogenetic MapXA6UniSTS
cM MapX18.0UniSTS
px-8f4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X59,215,177 - 59,215,276UniSTSGRCm38
MGSCv37X56,468,354 - 56,468,453UniSTSGRCm37
CeleraX45,676,915 - 45,677,014UniSTS
Cytogenetic MapXA6UniSTS
cM MapX18.0UniSTS
Fgf13  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapXA6UniSTS
Fgf13  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X59,062,556 - 59,063,545UniSTSGRCm38
MGSCv37X56,315,733 - 56,316,722UniSTSGRCm37
Cytogenetic MapXA6UniSTS
Fgf13  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapXA6UniSTS
Fgf13  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapXA6UniSTS
cM MapX18.0UniSTS
Fgf13  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapXA6UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300794Spha2_msperm head anomaly 2 (mouse)Not determinedX4083262187216531Mouse
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7360056151324042Mouse
1300702Fcsa4_mfemoral cross-sectional area 4 (mouse)Not determinedX4698383880983961Mouse
1301009Pbwg7_mpostnatal body weight growth 7 (mouse)Not determinedX4006835474068454Mouse
1301351Obq6_mobesity QTL 6 (mouse)Not determinedX5168349871391145Mouse
4141126Lvic5_mliver iron content 5 (mouse)Not determined5332332363983961Mouse
1301278Bdln1_mbody length 1 (mouse)Not determinedX4265674676656858Mouse
4142200Rtwq1_mreduced testis weight QTL 1 (mouse)Not determined4243170076431843Mouse
4141565Pbwg21_mpostnatal body weight growth 21 (mouse)Not determinedX4006835474068454Mouse
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined48090244130864007Mouse
4142286Pubt1_mpubertal timing 1 (mouse)Not determined5332332362836890Mouse
10412108Desp5_mdespair 5 (mouse)Not determinedX5567874589678745Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X55000000150000000Mouse
25314311Syncl3_msynaptonemal complex length 3 (mouse)X5290000090700000Mouse
13464140Hdlq108_mHDL QTL 108 (mouse)X5872835492728354Mouse
13208557Lgth13_mbody length 13 (mouse)X1200000060000000Mouse
13208567Bmiq12_mbody mass index QTL 12 (mouse)X3600000078000000Mouse
13208553Wght11_mweight 11 (mouse)X1200000060000000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1942
Count of miRNA genes:624
Interacting mature miRNAs:788
Transcripts:ENSMUST00000033473, ENSMUST00000119306, ENSMUST00000119833, ENSMUST00000123660, ENSMUST00000124402, ENSMUST00000131319, ENSMUST00000138503, ENSMUST00000145767, ENSMUST00000150413
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001290414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001290415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001356335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_010200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006527793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006527795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006527796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006527797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006527799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF020737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF199608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF199614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF199615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL669891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL670091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL672247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL713968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC018238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD776909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ064772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LR130350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LXEJ02011984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U66202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000033473   ⟹   ENSMUSP00000033473
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX59,062,145 - 59,134,436 (-)Ensembl
RefSeq Acc Id: ENSMUST00000119306   ⟹   ENSMUSP00000113206
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX59,062,145 - 59,166,164 (-)Ensembl
RefSeq Acc Id: ENSMUST00000119833   ⟹   ENSMUSP00000113639
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX59,062,145 - 59,568,071 (-)Ensembl
RefSeq Acc Id: ENSMUST00000123660
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX59,131,874 - 59,133,162 (-)Ensembl
RefSeq Acc Id: ENSMUST00000124402   ⟹   ENSMUSP00000114905
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX59,131,877 - 59,567,472 (-)Ensembl
RefSeq Acc Id: ENSMUST00000131319   ⟹   ENSMUSP00000115765
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX59,250,808 - 59,568,071 (-)Ensembl
RefSeq Acc Id: ENSMUST00000138503
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX59,063,490 - 59,133,214 (-)Ensembl
RefSeq Acc Id: ENSMUST00000145767   ⟹   ENSMUSP00000119897
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX59,250,885 - 59,567,821 (-)Ensembl
RefSeq Acc Id: ENSMUST00000150413
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX59,566,814 - 59,568,048 (-)Ensembl
RefSeq Acc Id: NM_001290414   ⟹   NP_001277343
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X58,107,505 - 58,630,932 (-)NCBI
GRCm38X59,062,145 - 59,585,572 (-)NCBI
CeleraX45,524,333 - 46,037,572 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001290415   ⟹   NP_001277344
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X58,107,505 - 58,211,448 (-)NCBI
GRCm38X59,062,145 - 59,166,088 (-)NCBI
CeleraX45,524,333 - 46,037,572 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001356335   ⟹   NP_001343264
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X58,107,505 - 58,612,708 (-)NCBI
GRCm38X59,062,145 - 59,567,348 (-)NCBI
Sequence:
RefSeq Acc Id: NM_010200   ⟹   NP_034330
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X58,107,505 - 58,179,796 (-)NCBI
GRCm38X59,062,145 - 59,134,436 (-)NCBI
MGSCv37X56,315,327 - 56,387,613 (-)RGD
CeleraX45,524,333 - 46,037,572 (-)NCBI
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006527793   ⟹   XP_006527856
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X58,107,499 - 58,613,617 (-)NCBI
GRCm38X59,062,139 - 59,568,258 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006527795   ⟹   XP_006527858
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X58,107,499 - 58,613,176 (-)NCBI
GRCm38X59,062,139 - 59,567,816 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006527796   ⟹   XP_006527859
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X58,107,499 - 58,613,319 (-)NCBI
GRCm38X59,062,139 - 59,567,959 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006527797   ⟹   XP_006527860
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X58,107,499 - 58,613,596 (-)NCBI
GRCm38X59,062,139 - 59,568,258 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006527799   ⟹   XP_006527862
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X58,107,499 - 58,185,953 (-)NCBI
GRCm38X59,062,139 - 59,140,593 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036161813   ⟹   XP_036017706
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X58,107,499 - 58,613,169 (-)NCBI
RefSeq Acc Id: XM_036161814   ⟹   XP_036017707
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X58,107,499 - 58,613,214 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_034330   ⟸   NM_010200
- Peptide Label: isoform 1
- UniProtKB: P70377 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006527856   ⟸   XM_006527793
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006527860   ⟸   XM_006527797
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006527858   ⟸   XM_006527795
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006527859   ⟸   XM_006527796
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006527862   ⟸   XM_006527799
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: NP_001277343   ⟸   NM_001290414
- Peptide Label: isoform 2
- Sequence:
RefSeq Acc Id: NP_001277344   ⟸   NM_001290415
- Peptide Label: isoform 3
- UniProtKB: P70377 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001343264   ⟸   NM_001356335
- Peptide Label: isoform 4
RefSeq Acc Id: ENSMUSP00000113639   ⟸   ENSMUST00000119833
RefSeq Acc Id: ENSMUSP00000113206   ⟸   ENSMUST00000119306
RefSeq Acc Id: ENSMUSP00000114905   ⟸   ENSMUST00000124402
RefSeq Acc Id: ENSMUSP00000119897   ⟸   ENSMUST00000145767
RefSeq Acc Id: ENSMUSP00000115765   ⟸   ENSMUST00000131319
RefSeq Acc Id: ENSMUSP00000033473   ⟸   ENSMUST00000033473
RefSeq Acc Id: XP_036017707   ⟸   XM_036161814
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036017706   ⟸   XM_036161813
- Peptide Label: isoform X2

Promoters
RGD ID:6845702
Promoter ID:MM_KWN:60453
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000044387
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X56,387,076 - 56,387,576 (-)MPROMDB
RGD ID:13680574
Promoter ID:EPDNEW_M24436
Type:initiation region
Name:Fgf13_1
Description:Mus musculus fibroblast growth factor 13 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M24437  EPDNEW_M24438  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X59,134,387 - 59,134,447EPDNEW
RGD ID:13680576
Promoter ID:EPDNEW_M24437
Type:multiple initiation site
Name:Fgf13_2
Description:Mus musculus fibroblast growth factor 13 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M24436  EPDNEW_M24438  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X59,166,091 - 59,166,151EPDNEW
RGD ID:13680578
Promoter ID:EPDNEW_M24438
Type:initiation region
Name:Fgf13_3
Description:Mus musculus fibroblast growth factor 13 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M24436  EPDNEW_M24437  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X59,568,078 - 59,568,138EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:109178 AgrOrtholog
Ensembl Genes ENSMUSG00000031137 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000033473 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000113206 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000113639 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000114905 UniProtKB/TrEMBL
  ENSMUSP00000115765 UniProtKB/TrEMBL
  ENSMUSP00000119897 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000033473 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000119306 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000119833 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000124402 UniProtKB/TrEMBL
  ENSMUST00000131319 UniProtKB/TrEMBL
  ENSMUST00000145767 UniProtKB/TrEMBL
InterPro FGF13 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Fibroblast_GF_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IL1/FGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:14168 UniProtKB/Swiss-Prot
MGD MGI:109178 ENTREZGENE
NCBI Gene 14168 ENTREZGENE
PANTHER PTHR11486 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11486:SF145 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11486:SF77 UniProtKB/TrEMBL
Pfam FGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Fgf13 PhenoGen
PRINTS HBGFFGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE HBGF_FGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART FGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50353 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A067XG51_MOUSE UniProtKB/TrEMBL
  B1AU20_MOUSE UniProtKB/TrEMBL
  B1AU22_MOUSE UniProtKB/TrEMBL
  B1AU23_MOUSE UniProtKB/TrEMBL
  FGF13_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q9JLA4_MOUSE UniProtKB/TrEMBL
UniProt Secondary B1AU21 UniProtKB/Swiss-Prot
  O35338 UniProtKB/Swiss-Prot
  Q3UR31 UniProtKB/Swiss-Prot
  Q8VCY9 UniProtKB/Swiss-Prot
  Q9JLA5 UniProtKB/Swiss-Prot