F11r (F11 receptor) - Rat Genome Database

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Gene: F11r (F11 receptor) Mus musculus
Analyze
Symbol: F11r
Name: F11 receptor
RGD ID: 1553576
MGI Page MGI
Description: Predicted to have PDZ domain binding activity; integrin binding activity; and protein homodimerization activity. Involved in several processes, including epithelial cell differentiation; intestinal absorption; and regulation of membrane permeability. Localizes to bicellular tight junction. Is expressed in several structures, including 4-8 cell stage embryo; alimentary system; respiratory system; sensory organ; and urinary system. Human ortholog(s) of this gene implicated in hypertension. Orthologous to human F11R (F11 receptor); INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 9130004G24; AA638916; BV11 antigen; ESTM3; ESTM33; F11 receptor/F11R; JAM; JAM-; JAM-1; JAM-A; Jcam; Jcam1; junction cell adhesion molecule A; junction cell adhesion molecule1; junctional adhesion molecule 1; junctional adhesion molecule A; Ly10; Ly106
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391171,265,129 - 171,292,161 (+)NCBIGRCm39mm39
GRCm39 Ensembl1171,265,103 - 171,292,171 (+)Ensembl
GRCm381171,437,561 - 171,464,593 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1171,437,535 - 171,464,603 (+)EnsemblGRCm38mm10GRCm38
MGSCv371173,367,692 - 173,394,724 (+)NCBIGRCm37mm9NCBIm37
MGSCv361173,274,236 - 173,301,268 (+)NCBImm8
Celera1173,888,870 - 173,917,464 (+)NCBICelera
Cytogenetic Map1H3NCBI
cM Map179.43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
17beta-estradiol 3-benzoate  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2-hydroxypropanoic acid  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methylcholanthrene  (EXP)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (EXP)
acrolein  (ISO)
acrylamide  (ISO)
all-trans-retinoic acid  (EXP,ISO)
alpha-pinene  (ISO)
ammonium chloride  (ISO)
arsenite(3-)  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
cadmium dichloride  (ISO)
carbonyl sulfide  (ISO)
cisplatin  (ISO)
clofibrate  (EXP)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dibenzo[a,l]pyrene  (ISO)
dibutyl phthalate  (EXP,ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (ISO)
ethanol  (EXP)
ethyl methanesulfonate  (ISO)
etoposide  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
fulvestrant  (ISO)
fumonisin B1  (EXP)
hydralazine  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
luteolin  (ISO)
LY294002  (ISO)
methamphetamine  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
N-[3,5-bis(trifluoromethyl)phenyl]-5-chloro-2-hydroxybenzamide  (ISO)
N-nitrosodiethylamine  (EXP)
ochratoxin A  (ISO)
oxaliplatin  (ISO)
ozone  (ISO)
p-cresol  (ISO)
paracetamol  (EXP)
phorbol 13-acetate 12-myristate  (EXP)
poly(I:C)  (ISO)
potassium iodide  (ISO)
quercitrin  (ISO)
rac-lactic acid  (ISO)
riddelliine  (ISO)
SB 203580  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (ISO)
sulforaphane  (ISO)
tetrachloromethane  (EXP)
topotecan  (ISO)
tributylstannane  (ISO)
trichostatin A  (ISO)
tyrphostin AG 1478  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:10349636   PMID:10395200   PMID:10428027   PMID:10698320   PMID:10852816   PMID:11036763   PMID:11042159   PMID:11076861   PMID:11120739   PMID:11171323   PMID:11217851   PMID:11401431  
PMID:11447115   PMID:11500366   PMID:11689568   PMID:12477932   PMID:12515806   PMID:12520002   PMID:12697893   PMID:12810109   PMID:12904583   PMID:14519386   PMID:14610273   PMID:15494378  
PMID:15657074   PMID:15811349   PMID:15827135   PMID:15977176   PMID:16027360   PMID:16141072   PMID:16141073   PMID:16306427   PMID:16783819   PMID:16809549   PMID:16857733   PMID:16914739  
PMID:17110935   PMID:17118692   PMID:17505016   PMID:17623668   PMID:17690169   PMID:17853450   PMID:17986666   PMID:18022613   PMID:18039951   PMID:18344982   PMID:18353970   PMID:18446885  
PMID:18514073   PMID:18547333   PMID:18554416   PMID:18667420   PMID:19118219   PMID:19154988   PMID:19176753   PMID:19211506   PMID:19258599   PMID:19828736   PMID:20160037   PMID:20184779  
PMID:20584329   PMID:20826529   PMID:21267068   PMID:21372850   PMID:21731673   PMID:21873635   PMID:22020416   PMID:22155109   PMID:22271446   PMID:22371556   PMID:22733993   PMID:22904169  
PMID:22981539   PMID:23568966   PMID:23667656   PMID:23885123   PMID:24065611   PMID:24147027   PMID:24259506   PMID:24300854   PMID:24373972   PMID:24657919   PMID:24704627   PMID:25149763  
PMID:25251699   PMID:25438062   PMID:25468657   PMID:25472975   PMID:25826454   PMID:25994236   PMID:26265072   PMID:27518902   PMID:27707753   PMID:28062807   PMID:28211187   PMID:29191926  
PMID:30333307   PMID:30625033   PMID:30745566   PMID:31075901  


Genomics

Comparative Map Data
F11r
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391171,265,129 - 171,292,161 (+)NCBIGRCm39mm39
GRCm39 Ensembl1171,265,103 - 171,292,171 (+)Ensembl
GRCm381171,437,561 - 171,464,593 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1171,437,535 - 171,464,603 (+)EnsemblGRCm38mm10GRCm38
MGSCv371173,367,692 - 173,394,724 (+)NCBIGRCm37mm9NCBIm37
MGSCv361173,274,236 - 173,301,268 (+)NCBImm8
Celera1173,888,870 - 173,917,464 (+)NCBICelera
Cytogenetic Map1H3NCBI
cM Map179.43NCBI
F11R
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1160,995,211 - 161,021,343 (-)EnsemblGRCh38hg38GRCh38
GRCh381160,995,211 - 161,021,152 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371160,965,001 - 160,990,942 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361159,232,608 - 159,275,358 (-)NCBINCBI36hg18NCBI36
Build 341157,779,056 - 157,821,784NCBI
Celera1134,032,809 - 134,058,962 (-)NCBI
Cytogenetic Map1q23.3NCBI
HuRef1132,321,150 - 132,348,030 (-)NCBIHuRef
CHM1_11162,360,724 - 162,386,856 (-)NCBICHM1_1
F11r
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21383,873,797 - 83,897,388 (+)NCBI
Rnor_6.0 Ensembl1389,826,254 - 89,850,612 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01389,826,272 - 89,850,151 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01394,453,478 - 94,477,357 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41387,369,918 - 87,393,508 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11387,558,801 - 87,582,389 (+)NCBI
Celera1383,504,334 - 83,527,924 (+)NCBICelera
Cytogenetic Map13q24NCBI
F11r
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546812,765,874 - 12,785,929 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546812,764,968 - 12,785,956 (-)NCBIChiLan1.0ChiLan1.0
F11R
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11140,322,264 - 140,347,158 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1140,324,943 - 140,346,890 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01136,399,766 - 136,424,722 (-)NCBIMhudiblu_PPA_v0panPan3
F11R
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13821,433,819 - 21,456,722 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3821,451,952 - 21,454,959 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3821,506,583 - 21,530,426 (+)NCBI
ROS_Cfam_1.03821,549,642 - 21,573,725 (+)NCBI
UMICH_Zoey_3.13821,437,767 - 21,461,771 (+)NCBI
UNSW_CanFamBas_1.03821,851,653 - 21,875,546 (+)NCBI
UU_Cfam_GSD_1.03822,261,259 - 22,285,444 (+)NCBI
F11r
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050587,109,320 - 7,130,236 (-)NCBI
SpeTri2.0NW_004936903317,975 - 338,892 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
F11R
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl489,425,039 - 89,449,932 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1489,425,101 - 89,447,889 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2497,325,385 - 97,348,465 (-)NCBISscrofa10.2Sscrofa10.2susScr3
F11R
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1202,966,019 - 2,986,177 (+)NCBI
ChlSab1.1 Ensembl202,966,164 - 2,984,269 (+)Ensembl
Vero_WHO_p1.0NW_0236660382,004,876 - 2,027,811 (+)NCBI
F11r
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624794346,281 - 367,132 (+)NCBI

Position Markers
F11r  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381171,460,950 - 171,461,269UniSTSGRCm38
MGSCv371173,391,081 - 173,391,400UniSTSGRCm37
Celera1173,913,279 - 173,913,598UniSTS
Cytogenetic Map1H2UniSTS
cM Map193.3UniSTS
AA638916  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381171,463,773 - 171,463,943UniSTSGRCm38
MGSCv371173,393,904 - 173,394,074UniSTSGRCm37
Celera1173,916,644 - 173,916,814UniSTS
Cytogenetic Map1H2UniSTS
cM Map193.3UniSTS
F11r  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1H2UniSTS
F11r  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1H2UniSTS
F11r  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1H2UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301710Bmd5_mbone mineral density 5 (mouse)Not determined1139774467173774646Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145744740189571420Mouse
1301467Pcir1_mperiosteal circumference 1 (mouse)Not determined1141405603175405702Mouse
1300934Cfbw1_mcystic fibrosis body weight 1 (mouse)Not determined1145317638179317756Mouse
1300948Fglu2_mfasting glucose 2 (mouse)Not determined1157628733191628870Mouse
1301866Cplaq3_mcircadian period of locomotor activity 3 (mouse)Not determined1155893961189895041Mouse
1301189Lmr8_mleishmaniasis resistance 8 (mouse)Not determined1156774467189571420Mouse
1301191Stia1_mserum transfer induced arthritis 1 (mouse)Not determined1141405603175405702Mouse
1301523Ccrs1_mcorpus callosum hemisphere surface size 1 (mouse)Not determined1139774467173774646Mouse
1301565Mnotch_mmodifier of Notch (mouse)Not determined1157628733191628870Mouse
1301596Elnt_mescape latencies during navigation task (mouse)Not determined1162317638194429220Mouse
1301602Bslm4_mbasal locomotor activity 4 (mouse)Not determined1157628733191628870Mouse
1558720Bpq8_mblood pressure QTL 8 (mouse)Not determined1143457095177457233Mouse
1301614Cgnz1_mchronic glomerulonephritis in NZM 1 (mouse)Not determined1152211172186211344Mouse
1559024Zit1_mzinc induced tolerance 1 (mouse)Not determined1167730317195471971Mouse
1302158Fembrs5_mfemur breaking strength 5 (mouse)Not determined1167730317195471971Mouse
1558802Skmw6_mskeletal muscle weight 6 (mouse)Not determined1168222387195471971Mouse
1302193Cpfd1_mcerebellum pattern fissures (mouse)Not determined1139774467173774646Mouse
1302037Nktcn1_mnatural killer T cell numbers 1 (mouse)Not determined1168358674171804689Mouse
1302098Eila1_methanol induced locomotor activity 1 (mouse)Not determined1112081092175641372Mouse
1301431Pcho1_mplasma cholesterol 1 (mouse)Not determined1159435007193435127Mouse
1300777Chol10_mcholesterol 10 (mouse)Not determined9148047933182048047Mouse
1300837Vmbic1_mventral midbrain iron content 1 (mouse)Not determined1139624618173624738Mouse
1300842Sle9_msystematic lupus erythematosus susceptibility 9 (mouse)Not determined1158641251192641372Mouse
1301894Skull2_mskull morphology 2 (mouse)Not determined1139774467173774646Mouse
1300888Berr1_mberghei resistance locus 1 (mouse)Not determined1164315658190802075Mouse
1301932Ssta2_msusceptibility to Salmonella typhimurium antigens 2 (mouse)Not determined1155888654189888802Mouse
1357602Vtbt2_mvertebral trabecular bone trait 2 (mouse)Not determined1139774467173774646Mouse
1357618Splq5_mspleen weight QTL 5 (mouse)Not determined1150317922188627115Mouse
4141483Femwf7_mfemur work to failure 7 (mouse)Not determined167730317195471971Mouse
4141233Femwf12_mfemur work to failure 12 (mouse)Not determined141405603175405702Mouse
1302132Pbw1_mpentobarbital withdrawal QTL 1 (mouse)Not determined1156004198190004325Mouse
1302201Alcw1_malcohol withdrawal 1 (mouse)Not determined1171040785172138790Mouse
1300571Opfa_mopen field activity (mouse)Not determined1144703778178704023Mouse
1300696Bpq2_mblood pressure QTL 2 (mouse)Not determined1139774467173774646Mouse
1300732Melm2_mmelanoma modifier 2 (mouse)Not determined1157628733191628870Mouse
1300740Tne1_mtotal number errors (mouse)Not determined1139774467173774646Mouse
1300745Gvhd1_mgraft-versus-host disease 1 (mouse)Not determined1157628733191628870Mouse
1357493Lgaq3_mlate growth adjusted QTL 3 (mouse)Not determined1150317922188627115Mouse
1301016Szs1_mseizure susceptibility 1 (mouse)Not determined1171051174174628870Mouse
1301025Lbw7_mlupus NZB x NZW 7 (mouse)Not determined1152211172186211344Mouse
1301385Radpf2_mradiation pulmonary fibrosis 2 (mouse)Not determined1147249520183092234Mouse
1357889Lprq3_mlipoprotein QTL 3 (mouse)Not determined1152211172186211344Mouse
4141244Bmd5c_mbone mineral density 5c (mouse)Not determined155699229189699330Mouse
4141245Cq2_mcholesterol QTL 2 (mouse)Not determined1157628733191628870Mouse
4141346Skmw12_mskeletal muscle weight 12 (mouse)Not determined150929168184929353Mouse
1301333Mop3_mmorphine preference 3 (mouse)Not determined1167929168189571420Mouse
1301339Hdlq15_mHDL QTL 15 (mouse)Not determined1166092111195471971Mouse
1301202Yaa4_mY-linked autoimmune acceleration 4 (mouse)Not determined1158641251192641372Mouse
1301216Cbm1_mcerebellum weight 1 (mouse)Not determined1157628733191628870Mouse
1357854Sle16_msystematic lupus erythematosus susceptibility 16 (mouse)Not determined1169211172177550021Mouse
1301251Scc3_mcolon tumor susceptibility 3 (mouse)Not determined1168481626195471971Mouse
1301122Cd8mts1_mCD8 T memory cell subset 1 (mouse)Not determined1156004198190004325Mouse
1301132Mors1_mmodifier of obesity related sterility 1 (mouse)Not determined1170647303195471971Mouse
1301134Bmd1_mbone mineral density 1 (mouse)Not determined1156774467189571420Mouse
1301151Hdlq14_mHDL QTL 14 (mouse)Not determined1142661973176662164Mouse
1301164Tir3c_mtrypansomiasis infection response 3c (mouse)Not determined1154804480188804689Mouse
4141149Hbnr4_mHeligmosomoides bakeri nematode resistance 4 (mouse)Not determined147249520189251027Mouse
4141160Cq1_mcholesterol QTL 1 (mouse)Not determined1139624618173624738Mouse
4141165Bglu3_mblood glucose level 3 (mouse)Not determined156004198190004325Mouse
1301301Sle1_msystemic lupus erythmatosus susceptibility 1 (mouse)Not determined1152211172186211344Mouse
1301309Emo1_memotionality 1 (mouse)Not determined1163149528186261999Mouse
1300823Ath9_matherosclerosis 9 (mouse)Not determined1160285202194285317Mouse
1300969Sluc5_msusceptibility to lung cancer 5 (mouse)Not determined1151358674185358833Mouse
1301619Cafq1_mcaffeine metabolism QTL 1 (mouse)Not determined1155888654189888802Mouse
1301632Bw8q1_mbody weight at 8 weeks QTL 1 (mouse)Not determined1161373696195373830Mouse
1357485Lgq4_mlate growth QTL 4 (mouse)Not determined1150317922188627115Mouse
4142119Bpq21_mblood pressure QTL 21 (mouse)Not determined1152211172186211344Mouse
4142149Ctex_mCtla4 expression QTL (mouse)Not determined1153681660175641372Mouse
4142159Nba2_mNew Zealand Black autoimmunity 2 (mouse)Not determined152007542186007711Mouse
4142182Shali5_msurvival time to hyperoxic acute lung injury 5 (mouse)Not determined155706491186261999Mouse
4141554Cfmq1_mcystic fibrosis modifier QTL 1 (mouse)Not determined1152211172186211344Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52418578182423027Mouse
10043899Hdlq99_mHDL QTL 99 (mouse)Not determined1148047933182048047Mouse
10043963Obq25_mobesity QTL 25 (mouse)Not determined1154582944188582944Mouse
10402498Lmr20_mleishmaniasis resistance 20 (mouse)Not determined1158641251192641372Mouse
10412074Nhdlt1_mnon-HDL cholesterol and triglyceride levels 1 (mouse)Not determined1153848421187848536Mouse
10054490Opefa_mopen field activity (mouse)Not determined1153885284187885284Mouse
10054270Nba10_mNew Zealand Black autoimmunity 10 (mouse)Not determined1152919071186706423Mouse
10054271Nba9_mNew Zealand Black autoimmunity 9 (mouse)Not determined1155698056189699966Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1104005680191493284Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163815531189571420Mouse
10412205Bbaa30_mB.burgdorferi-associated arthritis 30 (mouse)Not determined1169211172174628870Mouse
4141878Qrr1_mQTL rich region on chromosome 1 (mouse)Not determined171051174175492500Mouse
4142014Wbcq5_mwhite blood cell quantitative locus 5 (mouse)Not determined1141267440175267586Mouse
4142065Bmd5b_mbone mineral density 5b (mouse)Not determined169007542171938066Mouse
27095935Ulnl5_mulna length 5, 10 week (mouse)1128800000181500000Mouse
27095915Scvln13_msacral vertebrae length 2, 16 week (mouse)1117600000180000000Mouse
11059558Lmr20c_mleishmaniasis resistance 20c (mouse)1158641251192641372Mouse
11059557Lmr20a_mleishmaniasis resistance 20a (mouse)1158641251192641372Mouse
12791001Aath6_maortic arch atherosclerosis 6 (mouse)1147391821181391821Mouse
11081167Tir8_mtrypanosome infection response 8 (mouse)1155888654189888802Mouse
12790996Aath2_maortic arch atherosclerosis 2 (mouse)1145250061179250061Mouse
12910522Scgq2_mspontaneous crescentic glomerulonephritis QTL 2 (mouse)1147249520171804689Mouse
12790987Tgl5_mtriglyceride 5 (mouse)1160269591194269591Mouse
12790988Phdlc5_mplasma HDL cholesterol 5 (mouse)9160269591194269591Mouse
11251722Ewc1_methanol withdrawal and consumption 1 (mouse)1152305175186305175Mouse
13207571Tcq11_mtotal cholesterol QTL 11 (mouse)1169310000179820000Mouse
12792983Liq1_mlimb inflammation QTL 1 (mouse)1167758517191493284Mouse
13464138Hdlq107_mHDL QTL 107 (mouse)1152305175186305175Mouse
11049576Lmr8a_mleishmaniasis resistance 8a (mouse)1139774467173774646Mouse
12790984Pcho7_mplasma cholesterol 7 (mouse)1147391821181391821Mouse
12910521Scgq1_mspontaneous crescentic glomerulonephritis QTL 1 (mouse)1156774467176435127Mouse
11533913Rd6m1_mretinal degeneration 6 modifier 1 (mouse)1141405603175405702Mouse
12904957Gmmq1_mgastrocnemius muscle mass QTL 1 (mouse)1155175373189175373Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13000000185000000Mouse
11537365Cnes4_mC. neoformans susceptibility locus 4 (mouse)1144621573178621573Mouse
12904936Edlmmq1_mextensor digitorum longus muscle mass QTL 1 (mouse)1155175373189175373Mouse
27095901Scvln8_msacral vertebrae length 2, 10 week (mouse)194200000172200000Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)176000000181500000Mouse
12904944Tammq1_mtibialis anterior muscle mass QTL 1 (mouse)1155175373189175373Mouse
11059556Lmr20b_mleishmaniasis resistance 20b (mouse)1158641251192641372Mouse
10766456Sle21_msystematic lupus erythematosus susceptibility 21 (mouse)1156004198190004325Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:635
Count of miRNA genes:437
Interacting mature miRNAs:492
Transcripts:ENSMUST00000043839, ENSMUST00000144497, ENSMUST00000155913
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000043839   ⟹   ENSMUSP00000041907
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1171,437,535 - 171,464,603 (+)Ensembl
RefSeq Acc Id: ENSMUST00000144497
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1171,437,579 - 171,460,846 (+)Ensembl
RefSeq Acc Id: ENSMUST00000155913
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1171,462,850 - 171,463,645 (+)Ensembl
RefSeq Acc Id: NM_172647   ⟹   NP_766235
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391171,265,129 - 171,292,161 (+)NCBI
GRCm381171,437,561 - 171,464,593 (+)ENTREZGENE
MGSCv371173,367,692 - 173,394,724 (+)RGD
Celera1173,888,870 - 173,917,464 (+)RGD
cM Map1 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_766235 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH21876 (Get FASTA)   NCBI Sequence Viewer  
  BAC28369 (Get FASTA)   NCBI Sequence Viewer  
  CAJ18555 (Get FASTA)   NCBI Sequence Viewer  
  EDL39078 (Get FASTA)   NCBI Sequence Viewer  
  O88792 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_766235   ⟸   NM_172647
- Peptide Label: precursor
- UniProtKB: O88792 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000041907   ⟸   ENSMUST00000043839
Protein Domains
Ig-like V-type

Promoters
RGD ID:6875702
Promoter ID:EPDNEW_M1302
Type:initiation region
Name:F11r_1
Description:Mus musculus F11 receptor , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381171,437,578 - 171,437,638EPDNEW
RGD ID:6817323
Promoter ID:MM_KWN:2864
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   Spleen
Transcripts:OTTMUST00000051546,   OTTMUST00000051547,   UC007DON.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361173,367,484 - 173,367,984 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1321398 AgrOrtholog
Ensembl Genes ENSMUSG00000038235 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000041907 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000043839 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot
InterPro F11R UniProtKB/Swiss-Prot
  Ig-like_dom UniProtKB/Swiss-Prot
  Ig-like_dom_sf UniProtKB/Swiss-Prot
  Ig-like_fold UniProtKB/Swiss-Prot
  Ig_sub UniProtKB/Swiss-Prot
  Ig_sub2 UniProtKB/Swiss-Prot
  Ig_V-set UniProtKB/Swiss-Prot
KEGG Report mmu:16456 UniProtKB/Swiss-Prot
MGD MGI:1321398 ENTREZGENE
NCBI Gene 16456 ENTREZGENE
PANTHER PTHR45113 UniProtKB/Swiss-Prot
Pfam V-set UniProtKB/Swiss-Prot
PhenoGen F11r PhenoGen
PROSITE IG_LIKE UniProtKB/Swiss-Prot
SMART IGc2 UniProtKB/Swiss-Prot
  IGv UniProtKB/Swiss-Prot
  SM00409 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot
UniProt JAM1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q8VC39 UniProtKB/Swiss-Prot