Plcd1 (phospholipase C, delta 1) - Rat Genome Database

Name: Plcd1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Plcd1 (phospholipase C, delta 1) Mus musculus

Analyze

Symbol:

Plcd1

Name:

phospholipase C, delta 1

RGD ID:

1553559

MGI Page

MGI

Description:

Exhibits phospholipase C activity and phospholipid binding activity. Involved in angiogenesis; labyrinthine layer blood vessel development; and regulation of cell population proliferation. Localizes to cytosol. Is expressed in several structures, including alimentary system; appendicular skeleton; cranium; genitourinary system; and sensory organ. Human ortholog(s) of this gene implicated in nonsyndromic congenital nail disorder 3. Orthologous to human PLCD1 (phospholipase C delta 1); PARTICIPATES IN G protein mediated signaling pathway; inositol phosphate metabolic pathway; phosphatidylinositol 3-kinase signaling pathway; INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; 4-hydroxyphenyl retinamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1; 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase delta-1; AW212592; C79986; phosphoinositide phospholipase C-delta-1; phospholipase C delta 1 Lf; phospholipase C delta-1; phospholipase C-delta-1; PLC-delta 1; PLC-delta-1

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PLCD1 (phospholipase C delta 1)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Rattus norvegicus (Norway rat):	Plcd1 (phospholipase C, delta 1)	HGNC	EggNOG, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Plcd1 (phospholipase C delta 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PLCD1 (phospholipase C delta 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PLCD1 (phospholipase C delta 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Plcd1 (phospholipase C delta 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PLCD1 (phospholipase C delta 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	PLCD1 (phospholipase C delta 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Plcd1 (phospholipase C delta 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	PLCD3 (phospholipase C delta 3)	HGNC	OrthoMCL
Homo sapiens (human):	PLCD4 (phospholipase C delta 4)	HGNC	OrthoMCL
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Plcd1 (phospholipase C, delta 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Homo sapiens (human):	PLCD1 (phospholipase C delta 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Danio rerio (zebrafish):	plcd1a (phospholipase C, delta 1a)	Alliance	DIOPT (PhylomeDB\|ZFIN)
Danio rerio (zebrafish):	plcd1b (phospholipase C, delta 1b)	Alliance	DIOPT (PhylomeDB\|TreeFam\|ZFIN)
Saccharomyces cerevisiae (baker's yeast):	PLC1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|Roundup)
Caenorhabditis elegans (roundworm):	plc-4	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|PANTHER\|Roundup\|TreeFam)

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	118,900,595 - 118,922,570 (-)	NCBI	GRCm39		mm39
GRCm38	9	119,071,527 - 119,093,502 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	119,071,527 - 119,093,502 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	118,980,645 - 119,002,614 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	9	118,920,225 - 118,942,194 (-)	NCBI			mm8
Celera	9	119,539,423 - 119,561,381 (-)	NCBI		Celera
Cytogenetic Map	9	F3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

alopecia (IMP)

Alzheimer's disease (ISO)

Brugada syndrome (ISO)

congestive heart failure (ISO)

Hyperoxia (ISO)

hypertension (ISO)

Hypotension (ISO)

Leukonychia Totalis (ISO)

Myocardial Ischemia (ISO)

Myocardial Reperfusion Injury (ISO)

nonsyndromic congenital nail disorder 3 (ISO)

osteoarthritis (ISO)

Skin Neoplasms (IMP)

Visceral Heterotaxy 4, Autosomal (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(R)-noradrenaline (ISO)

1,2-dimethylhydrazine (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

3-\{1-[3-(dimethylamino)propyl]-1H-indol-3-yl\}-4-(1H-indol-3-yl)-1H-pyrrole-2,5-dione (ISO)

4-hydroxyphenyl retinamide (EXP)

acetamide (ISO)

acrylonitrile (ISO)

aluminium atom (ISO)

aluminium(0) (ISO)

amphetamine (ISO)

anthra[1,9-cd]pyrazol-6(2H)-one (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

asbestos (ISO)

atrazine (ISO)

benzo[a]pyrene (EXP,ISO)

benzo[b]fluoranthene (EXP)

beta-naphthoflavone (ISO)

bisphenol A (ISO)

Brodifacoum (ISO)

cerium trichloride (EXP)

choline (EXP)

chrysene (EXP)

cisplatin (ISO)

clothianidin (ISO)

diarsenic trioxide (ISO)

dibutyl phthalate (EXP)

dioxygen (ISO)

doxorubicin (EXP,ISO)

ethanol (ISO)

flavonoids (ISO)

folic acid (EXP)

furan (ISO)

genistein (ISO)

L-methionine (EXP)

methamphetamine (EXP)

morphine (ISO)

N-nitrosodiethylamine (ISO)

ozone (ISO)

paracetamol (EXP)

phenylephrine (ISO)

potassium chromate (ISO)

prazosin (ISO)

prostaglandin F2alpha (ISO)

resveratrol (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

Soman (ISO)

sunitinib (ISO)

tert-butyl hydroperoxide (EXP)

tetrachloromethane (EXP)

U-73122 (EXP,ISO)

valproic acid (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

angiogenesis (IGI)

G protein-coupled receptor signaling pathway (ISO)

intracellular signal transduction (IEA)

labyrinthine layer blood vessel development (IGI)

lipid catabolic process (IEA)

lipid metabolic process (IEA)

phosphatidylinositol metabolic process (ISO)

phosphatidylinositol-mediated signaling (IBA)

positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G protein-coupled signaling pathway (ISO)

positive regulation of inositol trisphosphate biosynthetic process (ISO)

positive regulation of norepinephrine secretion (ISO)

regulation of cell population proliferation (IGI)

regulation of cytosolic calcium ion concentration (ISO)

regulation of phospholipase C activity (ISO)

response to aluminum ion (ISO)

response to calcium ion (ISO)

response to hyperoxia (ISO)

response to organonitrogen compound (ISO)

response to peptide hormone (ISO)

response to prostaglandin F (ISO)

signal transduction (IEA)

Cellular Component

cytoplasm (IDA,ISO)

cytosol (IDA,ISO)

membrane (ISO)

membrane raft (ISO)

mitochondrial membrane (ISO)

nucleus (ISO)

Molecular Function

calcium ion binding (ISO)

calcium-dependent phospholipid binding (ISO)

GTPase activating protein binding (ISO)

hydrolase activity (IEA)

inositol 1,4,5 trisphosphate binding (ISO)

metal ion binding (IEA)

phosphatidic acid binding (IDA)

phosphatidylinositol phosphate binding (IDA)

phosphatidylinositol phospholipase C activity (IBA,ISO)

phosphatidylinositol-4,5-bisphosphate binding (ISO)

phosphatidylserine binding (IDA)

phospholipase C activity (IDA)

phospholipid binding (ISO)

phosphoric diester hydrolase activity (IEA)

protein binding (IPI)

Molecular Pathway Annotations Click to see Annotation Detail View

G protein mediated signaling pathway (ISO)

inositol phosphate metabolic pathway (IEA)

phosphatidylinositol 3-kinase signaling pathway (IEA)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal common myeloid progenitor cell morphology (IAGP)

abnormal epidermal layer morphology (IAGP)

abnormal epidermis suprabasal layer morphology (IAGP)

abnormal granulocyte differentiation (IAGP)

abnormal hair follicle morphology (IAGP)

abnormal keratinocyte differentiation (IAGP)

alopecia (IAGP)

decreased B cell number (IAGP)

decreased body size (IAGP)

decreased erythrocyte cell number (IAGP)

enlarged axillary lymph nodes (IAGP)

enlarged inguinal lymph nodes (IAGP)

enlarged lymph nodes (IAGP)

enlarged spleen (IAGP)

epidermal cyst (IAGP)

increased circulating interleukin-17 level (IAGP)

increased granulocyte number (IAGP)

increased interleukin-17 secretion (IAGP)

increased leukocyte cell number (IAGP)

increased NK T cell number (IAGP)

increased sebocyte number (IAGP)

increased skin tumor incidence (IAGP)

increased susceptibility to type IV hypersensitivity reaction (IAGP)

References

References - curated


1.	Asemu G, etal., Arch Biochem Biophys 2003 Mar 15;411(2):174-82.
2.	Hwang KC, etal., J Steroid Biochem Mol Biol. 2004 Jul;91(3):131-8.
3.	Kato H, etal., J Biol Chem. 1992 Apr 5;267(10):6483-7.
4.	Katsuya T, etal., Biochem Biophys Res Commun. 1992 Sep 30;187(3):1359-66.
5.	Ko MS, etal., Development 2000 Apr;127(8):1737-49.
6.	MGD data from the GO Consortium
7.	MGD IEA
8.	Nagasawa K, etal., Life Sci 2003 Aug 1;73(11):1453-62.
9.	Nakamura Y, etal., EMBO J 2003 Jun 16;22(12):2981-91.
10.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
11.	OMIM Disease Annotation Pipeline
12.	Peng Z, etal., Am J Hypertens. 2007 Jan;20(1):38-43.
13.	Pipeline to import KEGG annotations from KEGG into RGD
14.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
15.	RGD automated import pipeline for gene-chemical interactions
16.	Shimohama S and Matsushima H, Alzheimer Dis Assoc Disord. 1995;9 Suppl 2:15-22.
17.	Tappia PS, etal., J Mol Cell Cardiol. 2001 Mar;33(3):431-40.

Additional References at PubMed

PMID:2033248	PMID:7664667	PMID:8672127	PMID:9287114	PMID:10349636	PMID:10425196	PMID:10922068	PMID:11042159	PMID:11076861	PMID:11217851	PMID:11222494	PMID:12477932
PMID:14550290	PMID:14610273	PMID:14681479	PMID:15037625	PMID:15489334	PMID:15702972	PMID:15782199	PMID:15809301	PMID:15899900	PMID:16141072	PMID:16141073	PMID:16159958
PMID:16314520	PMID:17397799	PMID:17938256	PMID:18177742	PMID:18588506	PMID:18799693	PMID:19002527	PMID:20138965	PMID:21266583	PMID:21267068	PMID:21617180	PMID:21677750
PMID:21795401	PMID:21873635	PMID:22723964	PMID:22805570	PMID:23055941	PMID:23892088	PMID:23969236	PMID:24810051	PMID:24952961	PMID:25197077	PMID:25242442	PMID:26410627
PMID:26643908	PMID:27371838	PMID:27434733	PMID:28430185	PMID:29030553	PMID:29793503	PMID:30791982	PMID:32325033

Genomics

Comparative Map Data

Plcd1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	118,900,595 - 118,922,570 (-)	NCBI	GRCm39		mm39
GRCm38	9	119,071,527 - 119,093,502 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	119,071,527 - 119,093,502 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	118,980,645 - 119,002,614 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	9	118,920,225 - 118,942,194 (-)	NCBI			mm8
Celera	9	119,539,423 - 119,561,381 (-)	NCBI		Celera
Cytogenetic Map	9	F3	NCBI

PLCD1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	3	38,007,496 - 38,029,642 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38.p13 Ensembl	3	38,007,496 - 38,029,762 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	3	38,007,496 - 38,029,642 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	3	38,048,987 - 38,071,154 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	38,023,991 - 38,059,068 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	3	38,024,010 - 38,046,119	NCBI
Celera	3	37,983,370 - 38,005,535 (-)	NCBI
Cytogenetic Map	3	p22.2	NCBI
HuRef	3	37,991,684 - 38,013,851 (-)	NCBI		HuRef
CHM1_1	3	38,000,639 - 38,022,806 (-)	NCBI		CHM1_1

Plcd1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	8	127,753,514 - 127,782,070 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	127,753,539 - 127,782,070 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	126,970,643 - 126,991,422 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	124,023,090 - 124,052,193 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	8	124,042,827 - 124,071,930 (-)	NCBI
Celera	8	117,968,204 - 117,991,136 (-)	NCBI		Celera
Cytogenetic Map	8	q32	NCBI

Plcd1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955421	4,856,366 - 4,880,309 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955421	4,856,366 - 4,880,309 (-)	NCBI	ChiLan1.0	ChiLan1.0

PLCD1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	3	38,189,496 - 38,211,784 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	38,189,496 - 38,206,886 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	3	37,906,359 - 37,928,564 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

PLCD1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	23	7,781,787 - 7,805,336 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	23	7,782,495 - 7,804,969 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Plcd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936473	27,364,404 - 27,387,337 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PLCD1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	22,851,584 - 22,865,175 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	22,851,581 - 22,872,950 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	24,826,459 - 24,847,853 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PLCD1
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	1,372,874 - 1,395,475 (+)	NCBI
ChlSab1.1 Ensembl	15	1,373,234 - 1,395,711 (+)	Ensembl

Plcd1
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624773	20,108,383 - 20,130,630 (+)	NCBI

Position Markers

RH126779

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	9	119,071,662 - 119,071,871	UniSTS	GRCm38
MGSCv37	9	118,980,780 - 118,980,989	UniSTS	GRCm37
Celera	9	119,539,558 - 119,539,767	UniSTS
Cytogenetic Map	9	F4	UniSTS
Cytogenetic Map	9	F3	UniSTS
Whitehead/MRC_RH	9	1174.04	UniSTS

AW212592

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	9	119,071,585 - 119,071,698	UniSTS	GRCm38
MGSCv37	9	118,980,703 - 118,980,816	UniSTS	GRCm37
Celera	9	119,539,481 - 119,539,594	UniSTS
Cytogenetic Map	9	F3	UniSTS
Cytogenetic Map	9	F4	UniSTS
Whitehead/MRC_RH	9	1174.04	UniSTS

Plcd1

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	9	F3	UniSTS
cM Map	9		UniSTS

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4141833	W10q13_m	weight 10 weeks QTL 13 (mouse)			Not determined			63332429	120362868	Mouse
4141545	Tailaq2_m	tail length adjusted QTL 2 (mouse)			Not determined			63332429	120362868	Mouse
1357635	Splq4_m	spleen weight QTL 4 (mouse)			Not determined		9	63332429	120362868	Mouse
1300549	Bbaa17_m	B. burgdorferi-associated arthritis 17 (mouse)			Not determined		9	86230401	120230530	Mouse
1302103	Dob2_m	dietary obesity 2 (mouse)			Not determined		9	86239845	120289624	Mouse
11251716	Siim2_m	stress induced immobility 2 (mouse)					9	86748483	120748483	Mouse
12880422	V25Dq6_m	vitamin D inactive form serum level QTL 6 (mouse)					9	87800000	121800000	Mouse
10412242	Alpq8_m	alcohol preference QTL 8 (mouse)			Not determined		9	89284925	123284925	Mouse
1301649	Psl1_m	promotion susceptibility QTL 1 (mouse)			Not determined		9	89412277	123412396	Mouse
18182932	Metl3_m	metabolite locus 3, N-acetylglutamate (mouse)					9	89563342	123563342	Mouse
12910770	Splic1_m	spleen iron content 1 (mouse)					9	91413879	124595110	Mouse
12910772	Lvic6_m	liver iron content 6 (mouse)					9	91413879	124595110	Mouse
12910773	Splic3_m	spleen iron content 3 (mouse)					9	91413879	124595110	Mouse
1558767	Skmw11_m	skeletal muscle weight 11 (mouse)			Not determined		9	91641084	124595110	Mouse
13463474	Hbbcq5_m	hemoglobin concentration QTL 5 (mouse)					9	91641084	124595110	Mouse
13463475	Hctq7_m	hematocrit QTL 7 (mouse)					9	91641084	124595110	Mouse
13463477	Rbc9_m	red blood cell count 9 (mouse)					9	91641084	124595110	Mouse
13463478	Mchq18_m	mean corpuscular hemoglobin QTL 18 (mouse)					9	91641084	124595110	Mouse
13463480	Mchcq2_m	mean corpuscular hemoglobin concentration QTL 2 (mouse)					9	91641084	124595110	Mouse
12904937	Edlmmq9_m	extensor digitorum longus muscle mass QTL 9 (mouse)					9	91683173	124595110	Mouse
12904947	Tammq7_m	tibialis anterior muscle mass QTL 7 (mouse)					9	91683173	124595110	Mouse
12904961	Gmmq7_m	gastrocnemius muscle mass QTL 7 (mouse)					9	91683173	124595110	Mouse
1302001	Bdln5_m	body length 5 (mouse)			Not determined		9	93762590	124595110	Mouse
1301484	Bwq6_m	body weight (mouse)			Not determined		9	93762590	124595110	Mouse
14746992	Manh67_m	mandible shape 67 (mouse)					9	94036768	124595110	Mouse
11537364	Cnes5_m	C. neoformans susceptibility locus 5 (mouse)					9	96917590	124595110	Mouse
1301297	Lcho1_m	liver cholesterol 1 (mouse)			Not determined		9	101060861	124595110	Mouse
1357627	Tgq2_m	triglyceride QTL 2 (mouse)			Not determined		9	102000187	124595110	Mouse
1357648	Obq18_m	obesity QTL 18 (mouse)			Not determined		9	102000187	124595110	Mouse
1301789	Pbwg4_m	postnatal body weight growth 4 (mouse)			Not determined		9	103289445	124595110	Mouse
10412290	Pvacm1l_m	plasma vascular cell adhesion molecule 1 levels (mouse)			Not determined		9	103289445	124595110	Mouse
12879896	Berr3_m	berghei resistance locus 3 (mouse)					9	103289445	124595110	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	170
Count of miRNA genes:	153
Interacting mature miRNAs:	166
Transcripts:	ENSMUST00000010804
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001293648	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_019676	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_121571	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006511984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC055818	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF133125	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK028749	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK082890	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK197251	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BB839358	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC015249	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC025798	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY383308	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466587	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JN635596	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U85711	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000010804 ⟹ ENSMUSP00000010804

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	9	119,071,527 - 119,093,502 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000213464 ⟹ ENSMUSP00000149676

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	9	119,071,527 - 119,093,502 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000214470 ⟹ ENSMUSP00000149813

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	9	119,071,527 - 119,088,261 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000214491

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	9	119,072,579 - 119,074,303 (-)	Ensembl

RefSeq Acc Id:

NM_001293648 ⟹ NP_001280577

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	9	118,900,595 - 118,917,329 (-)	NCBI
GRCm38	9	119,071,527 - 119,088,261 (-)	NCBI
Celera	9	119,539,423 - 119,561,387 (-)	NCBI

Sequence:

show sequence

ACCTTCTCAAGGCTAGACTGCCGGCCGGACTCAGTCGGCTTCTAAGCTAGGATTCACCCTGGCA
GAGGCTTAGGAGAACACCATGCAGTGTCTAGGGGTCCGGAGTTGCAGACGGGGCAGCGTGAACC
GCTCCCGGGAGCTCTACCTGCAGGAGCAGAGTCGCAAAGTAGCGGCGCTCAATGGACAGAGACT
GGGGCTGCAGGATGACCCGGACCTTCAGGCCCTCCTGAAGGGCAGCCAGCTTCTGAAGGTGAAG
TCCAGCTCGTGGCGTAGAGAACGCTTCTACAAGCTACAGGAGGACTGCAAGACCATCTGGCAGG
AATCTCGCAAGGTCATGAGGTCCCCGGAGTCGCAGCTGTTCTCCATCGAGGACATTCAGGAGGT
GCGGATGGGACACCGCACAGAAGGCCTGGAGAAATTTGCCAGAGACATACCCGAGGACCGATGC
TTCTCCATCGTCTTCAAGGACCAGCGCAATACCCTAGACCTCATCGCCCCGTCTCCAGCTGACG
TCCAGCATTGGGTGCAGGGCCTGCGCAAGATCATCGACCGCTCGGGCTCCATGGACCAGCGGCA
GAAGCTGCAGCACTGGATTCACTCCTGCTTGCGAAAGGCTGATAAAAACAAGGATAACAAGATG
AACTTCAAGGAGGTGAAGGACTTCCTGAAGGAGCTCAACGTACAGGTGGATGACAGCTACGCCA
GGAAGATCTTCAGGGAATGTGACCACTCCCAGACAGACTCGCTGGAGGATGAGGAGATTGAGAC
CTTCTACAGGATGCTGACCCAGCGGGCAGAGATCGACCGTGCCTTTGCAGAGGCCGCAGGTTCT
GCGGAGACCCTGTCGGTGGAGAAGCTAGTGACGTTCCTGCAGCATCAGCAGCGGGAGGAGGAGG
CGGGGCCAGCCTTGGCCCTCTCTCTCATTGAGCGCTACGAGCCCAGTGAGACTGCCAAAGCCCA
GCGGCAGATGACCAAGGATGGCTTCCTCATGTACCTGCTGTCTGCTGACGGTAACGCCTTCAGC
CTGGCGCACCGCCGTGTCTACCAGGACATGAACCAGCCGCTCAGCCACTACTTAGTGTCTTCTT
CCCACAACACCTACCTACTGGAGGACCAGCTCACAGGGCCCAGCAGCACGGAGGCCTACATCCG
GGCTCTGTGCAAAGGCTGCCGGTGTCTGGAGCTGGACTGCTGGGACGGCCCCAACCAGGAACCC
ATCATCTACCATGGCTACACTTTTACCTCTAAGATACTTTTCTGCGACGTGCTCAGGGCCATCC
GGGACTACGCCTTCAAGGCATCCCCCTACCCAGTTATCCTGTCCCTGGAGAACCACTGCAGCCT
GGAGCAACAACGAGTCATGGCTCATCACCTGAGGGCCATCCTGGGGCCCATGCTGTTGGACCAG
CCGCTGGATGGGGTTACCACGAGCCTGCCTTCGCCTGAGCAACTGAAGGAAAAGATTCTGTTGA
AAGGGAAGAAACTGGGCGGGCTGCTACCTGCTGGAGGGGAAAACGGGCCTGAAGCCACCGATGT
GTCTGACGAAGATGAGGCTGCTGAAATGGAAGATGAGGCCGTGCGCAGCCAAGTGCAACACAAG
CCCAAGGAGGATAAGCTAAAGCTGGTGCCGGAGCTCTCCGACATGGTCATTTACTGCAAGAGTG
TCCACTTTGGTGGCTTCTCCAGTCCTAGCACCTCTGGGCAGGCATTCTATGAGATGGCTTCCTT
CTCCGAGAGCCGTGCCCTGCGGCTGCTGCAAGAATCAGGAAATAGTTTTGTCCGCCATAACGTG
GGCCATCTGAGCAGGATCTACCCAGCTGGGTGGAGGACAGATTCCTCCAACTACAGTCCCGTGG
AGATGTGGAATGGAGGCTGCCAGATTGTGGCTCTGAACTTCCAAACCCCTGGGCCAGAAATGGA
TGTTTACCTTGGCTGCTTCCAGGACAATGGAGGTTGTGGGTATGTGCTGAAACCGGCCTTCCTG
AGAGACCCTGACACCACCTTCAACTCACGGGCCCTGACTCAGGGGCCCTGGTGGGCCCCGAAGA
AGCTCCGAGTCTGGATCATCTCTGGACAGCAGCTGCCGAAGGTCAATAAGAATAAGAATTCTAT
CGTGGACCCCAAGGTGATAGTGGAGATCCACGGTGTGGGCCAGGATGTGGCCAGCCGTCAGACA
GCAGTTATTACCAATAATGGTTTCAACCCACGGTGGGACACGGAGTTTGAGTTTGTGGTAGCAG
TGCCTGACCTTGCCCTTGTACGTTTCATGGTAGAGGATTATGACTCCTCCTCTAAGAACGACTT
TATCGGCCAGAGTACTATCCCCTGGAACAGCCTCAAGCAGGGGTACCGCCATGTCCACCTCTTG
TCTAAGAATGGAGACCTGCATCCATCAGCCACTCTCTTTGTGAAGATCTCCATCCAGGACTAAG
CCTGGGGGACTGACGCAGTCCGCCCTGAGTGGGCGGAGCTGTGTCCACACCTGTCTGGCAATGT
TGCACCTCTGGCGCGGAGCTTGAGGCCACTGAACTGCCTTCAGCTCTAACACATCGCCTGAGCT
TCTACTTCTCTGGGGGTCCAGGAGCAGTCCAGTCCCCGGAGTGGTCTAAAATTCCGTTAGGAAC
AACACTGCATCTCTCTCCCTACCCCTAGTTGACTTTAGGTTGTGAGTTTTTATATAAAAAAAAA
TAATAATCACAAGATAAA

hide sequence

RefSeq Acc Id:

NM_019676 ⟹ NP_062650

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	9	118,900,595 - 118,922,570 (-)	NCBI
GRCm38	9	119,071,527 - 119,093,502 (-)	NCBI
MGSCv37	9	118,980,645 - 119,002,614 (-)	RGD
Celera	9	119,539,423 - 119,561,387 (-)	NCBI
cM Map	9		ENTREZGENE

Sequence:

show sequence

ATCTCAGTTCAGTTGGGTCCCTGCACCGGACTGCGCAAGGACCCCAGGCCGCTTGGTGATTTTG
CTCAAGTGAATCACGCCGCGTCCCCTCCTCCGCGCGCCCCGACCGGCATGGACTCCGGTCGGGA
CTTCCTGACCTTGCACGGGCTGCAGGATGACCCGGACCTTCAGGCCCTCCTGAAGGGCAGCCAG
CTTCTGAAGGTGAAGTCCAGCTCGTGGCGTAGAGAACGCTTCTACAAGCTACAGGAGGACTGCA
AGACCATCTGGCAGGAATCTCGCAAGGTCATGAGGTCCCCGGAGTCGCAGCTGTTCTCCATCGA
GGACATTCAGGAGGTGCGGATGGGACACCGCACAGAAGGCCTGGAGAAATTTGCCAGAGACATA
CCCGAGGACCGATGCTTCTCCATCGTCTTCAAGGACCAGCGCAATACCCTAGACCTCATCGCCC
CGTCTCCAGCTGACGTCCAGCATTGGGTGCAGGGCCTGCGCAAGATCATCGACCGCTCGGGCTC
CATGGACCAGCGGCAGAAGCTGCAGCACTGGATTCACTCCTGCTTGCGAAAGGCTGATAAAAAC
AAGGATAACAAGATGAACTTCAAGGAGGTGAAGGACTTCCTGAAGGAGCTCAACGTACAGGTGG
ATGACAGCTACGCCAGGAAGATCTTCAGGGAATGTGACCACTCCCAGACAGACTCGCTGGAGGA
TGAGGAGATTGAGACCTTCTACAGGATGCTGACCCAGCGGGCAGAGATCGACCGTGCCTTTGCA
GAGGCCGCAGGTTCTGCGGAGACCCTGTCGGTGGAGAAGCTAGTGACGTTCCTGCAGCATCAGC
AGCGGGAGGAGGAGGCGGGGCCAGCCTTGGCCCTCTCTCTCATTGAGCGCTACGAGCCCAGTGA
GACTGCCAAAGCCCAGCGGCAGATGACCAAGGATGGCTTCCTCATGTACCTGCTGTCTGCTGAC
GGTAACGCCTTCAGCCTGGCGCACCGCCGTGTCTACCAGGACATGAACCAGCCGCTCAGCCACT
ACTTAGTGTCTTCTTCCCACAACACCTACCTACTGGAGGACCAGCTCACAGGGCCCAGCAGCAC
GGAGGCCTACATCCGGGCTCTGTGCAAAGGCTGCCGGTGTCTGGAGCTGGACTGCTGGGACGGC
CCCAACCAGGAACCCATCATCTACCATGGCTACACTTTTACCTCTAAGATACTTTTCTGCGACG
TGCTCAGGGCCATCCGGGACTACGCCTTCAAGGCATCCCCCTACCCAGTTATCCTGTCCCTGGA
GAACCACTGCAGCCTGGAGCAACAACGAGTCATGGCTCATCACCTGAGGGCCATCCTGGGGCCC
ATGCTGTTGGACCAGCCGCTGGATGGGGTTACCACGAGCCTGCCTTCGCCTGAGCAACTGAAGG
AAAAGATTCTGTTGAAAGGGAAGAAACTGGGCGGGCTGCTACCTGCTGGAGGGGAAAACGGGCC
TGAAGCCACCGATGTGTCTGACGAAGATGAGGCTGCTGAAATGGAAGATGAGGCCGTGCGCAGC
CAAGTGCAACACAAGCCCAAGGAGGATAAGCTAAAGCTGGTGCCGGAGCTCTCCGACATGGTCA
TTTACTGCAAGAGTGTCCACTTTGGTGGCTTCTCCAGTCCTAGCACCTCTGGGCAGGCATTCTA
TGAGATGGCTTCCTTCTCCGAGAGCCGTGCCCTGCGGCTGCTGCAAGAATCAGGAAATAGTTTT
GTCCGCCATAACGTGGGCCATCTGAGCAGGATCTACCCAGCTGGGTGGAGGACAGATTCCTCCA
ACTACAGTCCCGTGGAGATGTGGAATGGAGGCTGCCAGATTGTGGCTCTGAACTTCCAAACCCC
TGGGCCAGAAATGGATGTTTACCTTGGCTGCTTCCAGGACAATGGAGGTTGTGGGTATGTGCTG
AAACCGGCCTTCCTGAGAGACCCTGACACCACCTTCAACTCACGGGCCCTGACTCAGGGGCCCT
GGTGGGCCCCGAAGAAGCTCCGAGTCTGGATCATCTCTGGACAGCAGCTGCCGAAGGTCAATAA
GAATAAGAATTCTATCGTGGACCCCAAGGTGATAGTGGAGATCCACGGTGTGGGCCAGGATGTG
GCCAGCCGTCAGACAGCAGTTATTACCAATAATGGTTTCAACCCACGGTGGGACACGGAGTTTG
AGTTTGTGGTAGCAGTGCCTGACCTTGCCCTTGTACGTTTCATGGTAGAGGATTATGACTCCTC
CTCTAAGAACGACTTTATCGGCCAGAGTACTATCCCCTGGAACAGCCTCAAGCAGGGGTACCGC
CATGTCCACCTCTTGTCTAAGAATGGAGACCTGCATCCATCAGCCACTCTCTTTGTGAAGATCT
CCATCCAGGACTAAGCCTGGGGGACTGACGCAGTCCGCCCTGAGTGGGCGGAGCTGTGTCCACA
CCTGTCTGGCAATGTTGCACCTCTGGCGCGGAGCTTGAGGCCACTGAACTGCCTTCAGCTCTAA
CACATCGCCTGAGCTTCTACTTCTCTGGGGGTCCAGGAGCAGTCCAGTCCCCGGAGTGGTCTAA
AATTCCGTTAGGAACAACACTGCATCTCTCTCCCTACCCCTAGTTGACTTTAGGTTGTGAGTTT
TTATATAAAAAAAAATAATAATCACAAGATAAA

hide sequence

RefSeq Acc Id:

NR_121571

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	9	118,900,595 - 118,922,570 (-)	NCBI
GRCm38	9	119,071,527 - 119,093,502 (-)	NCBI
Celera	9	119,539,423 - 119,561,387 (-)	NCBI

Sequence:

show sequence

ATCTCAGTTCAGTTGGGTCCCTGCACCGGACTGCGCAAGGACCCCAGGCCGCTTGGTGATTTTG
CTCAAGTGAATCACGCCGCGTCCCCTCCTCCGCGCGCCCCGACCGGCATGGACTCCGGTCGGGA
CTTCCTGACCTTGCACGGGCTGCAGGATGACCCGGACCTTCAGGCCCTCCTGAAGGGCAGCCAG
CTTCTGAAGGTGAAGTCCAGCTCGTGGCGTAGAGAACGCTTCTACAAGCTACAGGAGGACTGCA
AGACCATCTGGCAGGAATCTCGCAAGGTCATGAGGTCCCCGGAGTCGCAGCTGTTCTCCATCGA
GGACATTCAGGAGGTGCGGATGGGACACCGCACAGAAGGCCTGGAGAAATTTGCCAGAGACATA
CCCGAGGACCGATGCTTCTCCATCGTCTTCAAGGACCAGCGCAATACCCTAGACCTCATCGCCC
CGTCTCCAGCTGACGTCCAGCATTGGGTGCAGGGCCTGCGCAAGATCATCGACCGCTCGGGCTC
CATGGACCAGCGGCAGAAGCTGCAGCACTGGATTCACTCCTGCTTGCGAAAGGCTGATAAAAAC
AAGGATAACAAGATGAACTTCAAGGAGGTGAAGGACTTCCTGAAGGAGCTCAACGTACAGGTGG
ATGACAGCTACGCCAGGAAGATCTTCAGGGAATGTGACCACTCCCAGACAGACTCGCTGGAGGA
TGAGGAGATTGAGACCTTCTACAGGATGCTGACCCAGCGGGCAGAGATCGACCGTGCCTTTGCA
GAGGCCGCAGGTTCTGCGGAGACCCTGTCGGTGGAGAAGCTAGTGACGTTCCTGCAGCATCAGC
AGCGGGAGGAGGAGGCGGGGCCAGCCTTGGCCCTCTCTCTCATTGAGCGCTACGAGCCCAGTGA
GACTGCCAAAGCCCAGCGGCAGATGACCAAGGATGGCTTCCTCATGTACCTGCTGTCTGCTGAC
GGTAACGCCTTCAGCCTGGCGCACCGCCGTGTCTACCAGGACATGAACCAGCCGCTCAGCCACT
ACTTAGTGTCTTCTTCCCACAACACCTACCTACTGGAGGACCAGCTCACAGGGCCCAGCAGCAC
GGAGGCCTACATCCGGGCTCTGTGCAAAGGCTGCCGGTGTCTGGAGCTGGACTGCTGGGACGGC
CCCAACCAGGAACCCATCATCTACCATGGCTACACTTTTACCTCTAAGATACTTTTCTGCGACG
TGCTCAGGGCCATCCGGGACTACGCCTTCAAGGCATCCCCCTACCCAGTTATCCTGTCCCTGGA
GAACCACTGCAGCCTGGAGCAACAACGAGTCATGGCTCATCACCTGAGGGCCATCCTGGGGCCC
ATGCTGTTGGACCAGCCGCTGGATGGGGTTACCACGAGCCTGCCTTCGCCTGAGCAACTGAAGG
AAAAGATTCTGTTGAAAGGGAAGAAACTGGGCGGGCTGCTACCTGCTGGAGGGGAAAACGGGCC
TGAAGCCACCGATGTGTCTGACGAAGATGAGGCTGCTGAAATGGAAGATGAGGCCGTGCGCAGC
CAAGTGCAACACAAGCCCAAGTGCCCACCTTGTCCTACCCTACCTATGGCTCTAACCTGGGCCT
CCCCGCGGCCCCCAGGAGGATAAGCTAAAGCTGGTGCCGGAGCTCTCCGACATGGTCATTTACT
GCAAGAGTGTCCACTTTGGTGGCTTCTCCAGTCCTAGCACCTCTGGGCAGGCATTCTATGAGAT
GGCTTCCTTCTCCGAGAGCCGTGCCCTGCGGCTGCTGCAAGAATCAGGAAATAGTTTTGTCCGC
CATAACGTGGGCCATCTGAGCAGGATCTACCCAGCTGGGTGGAGGACAGATTCCTCCAACTACA
GTCCCGTGGAGATGTGGAATGGAGGCTGCCAGATTGTGGCTCTGAACTTCCAAACCCCTGGGCC
AGAAATGGATGTTTACCTTGGCTGCTTCCAGGACAATGGAGGTTGTGGGTATGTGCTGAAACCG
GCCTTCCTGAGAGACCCTGACACCACCTTCAACTCACGGGCCCTGACTCAGGGGCCCTGGTGGG
CCCCGAAGAAGCTCCGAGTCTGGATCATCTCTGGACAGCAGCTGCCGAAGGTCAATAAGAATAA
GAATTCTATCGTGGACCCCAAGGTGATAGTGGAGATCCACGGTGTGGGCCAGGATGTGGCCAGC
CGTCAGACAGCAGTTATTACCAATAATGGTTTCAACCCACGGTGGGACACGGAGTTTGAGTTTG
TGGTAGCAGTGCCTGACCTTGCCCTTGTACGTTTCATGGTAGAGGATTATGACTCCTCCTCTAA
GAACGACTTTATCGGCCAGAGTACTATCCCCTGGAACAGCCTCAAGCAGGGGTACCGCCATGTC
CACCTCTTGTCTAAGAATGGAGACCTGCATCCATCAGCCACTCTCTTTGTGAAGATCTCCATCC
AGGACTAAGCCTGGGGGACTGACGCAGTCCGCCCTGAGTGGGCGGAGCTGTGTCCACACCTGTC
TGGCAATGTTGCACCTCTGGCGCGGAGCTTGAGGCCACTGAACTGCCTTCAGCTCTAACACATC
GCCTGAGCTTCTACTTCTCTGGGGGTCCAGGAGCAGTCCAGTCCCCGGAGTGGTCTAAAATTCC
GTTAGGAACAACACTGCATCTCTCTCCCTACCCCTAGTTGACTTTAGGTTGTGAGTTTTTATAT
AAAAAAAAATAATAATCACAAGATAAA

hide sequence

RefSeq Acc Id:

XM_006511984 ⟹ XP_006512047

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	9	118,900,595 - 118,914,224 (-)	NCBI
GRCm38	9	119,071,527 - 119,085,174 (-)	NCBI

Sequence:

show sequence

GTCCTTTCATCCCAGCTCACTTCACTCTGAGCCAGGCCATTTCCCAGGTCACCCAGTAACTGCG
GAGCTTTTGAATTGTGCTCATTGATGTTGTAGACAAGTCACAGTGTCTAAGTATGGGCTTGGGG
CAGAGAGTGTAGCACAGTGGCCAAACACTTGTCTGCTATGCACAGATGACGTAGGTTCAATGGA
GACTCAACGCTGGGGCAGAAAGTGTGATCTTAGGGCTGCAGGATGACCCGGACCTTCAGGCCCT
CCTGAAGGGCAGCCAGCTTCTGAAGGTGAAGTCCAGCTCGTGGCGTAGAGAACGCTTCTACAAG
CTACAGGAGGACTGCAAGACCATCTGGCAGGAATCTCGCAAGGTCATGAGGTCCCCGGAGTCGC
AGCTGTTCTCCATCGAGGACATTCAGGAGGTGCGGATGGGACACCGCACAGAAGGCCTGGAGAA
ATTTGCCAGAGACATACCCGAGGACCGATGCTTCTCCATCGTCTTCAAGGACCAGCGCAATACC
CTAGACCTCATCGCCCCGTCTCCAGCTGACGTCCAGCATTGGGTGCAGGGCCTGCGCAAGATCA
TCGACCGCTCGGGCTCCATGGACCAGCGGCAGAAGCTGCAGCACTGGATTCACTCCTGCTTGCG
AAAGGCTGATAAAAACAAGGATAACAAGATGAACTTCAAGGAGGTGAAGGACTTCCTGAAGGAG
CTCAACGTACAGGTGGATGACAGCTACGCCAGGAAGATCTTCAGGGAATGTGACCACTCCCAGA
CAGACTCGCTGGAGGATGAGGAGATTGAGACCTTCTACAGGATGCTGACCCAGCGGGCAGAGAT
CGACCGTGCCTTTGCAGAGGCCGCAGGTTCTGCGGAGACCCTGTCGGTGGAGAAGCTAGTGACG
TTCCTGCAGCATCAGCAGCGGGAGGAGGAGGCGGGGCCAGCCTTGGCCCTCTCTCTCATTGAGC
GCTACGAGCCCAGTGAGACTGCCAAAGCCCAGCGGCAGATGACCAAGGATGGCTTCCTCATGTA
CCTGCTGTCTGCTGACGGTAACGCCTTCAGCCTGGCGCACCGCCGTGTCTACCAGGACATGAAC
CAGCCGCTCAGCCACTACTTAGTGTCTTCTTCCCACAACACCTACCTACTGGAGGACCAGCTCA
CAGGGCCCAGCAGCACGGAGGCCTACATCCGGGCTCTGTGCAAAGGCTGCCGGTGTCTGGAGCT
GGACTGCTGGGACGGCCCCAACCAGGAACCCATCATCTACCATGGCTACACTTTTACCTCTAAG
ATACTTTTCTGCGACGTGCTCAGGGCCATCCGGGACTACGCCTTCAAGGCATCCCCCTACCCAG
TTATCCTGTCCCTGGAGAACCACTGCAGCCTGGAGCAACAACGAGTCATGGCTCATCACCTGAG
GGCCATCCTGGGGCCCATGCTGTTGGACCAGCCGCTGGATGGGGTTACCACGAGCCTGCCTTCG
CCTGAGCAACTGAAGGAAAAGATTCTGTTGAAAGGGAAGAAACTGGGCGGGCTGCTACCTGCTG
GAGGGGAAAACGGGCCTGAAGCCACCGATGTGTCTGACGAAGATGAGGCTGCTGAAATGGAAGA
TGAGGCCGTGCGCAGCCAAGTGCAACACAAGCCCAAGGAGGATAAGCTAAAGCTGGTGCCGGAG
CTCTCCGACATGGTCATTTACTGCAAGAGTGTCCACTTTGGTGGCTTCTCCAGTCCTAGCACCT
CTGGGCAGGCATTCTATGAGATGGCTTCCTTCTCCGAGAGCCGTGCCCTGCGGCTGCTGCAAGA
ATCAGGAAATAGTTTTGTCCGCCATAACGTGGGCCATCTGAGCAGGATCTACCCAGCTGGGTGG
AGGACAGATTCCTCCAACTACAGTCCCGTGGAGATGTGGAATGGAGGCTGCCAGATTGTGGCTC
TGAACTTCCAAACCCCTGGGCCAGAAATGGATGTTTACCTTGGCTGCTTCCAGGACAATGGAGG
TTGTGGGTATGTGCTGAAACCGGCCTTCCTGAGAGACCCTGACACCACCTTCAACTCACGGGCC
CTGACTCAGGGGCCCTGGTGGGCCCCGAAGAAGCTCCGAGTCTGGATCATCTCTGGACAGCAGC
TGCCGAAGGTCAATAAGAATAAGAATTCTATCGTGGACCCCAAGGTGATAGTGGAGATCCACGG
TGTGGGCCAGGATGTGGCCAGCCGTCAGACAGCAGTTATTACCAATAATGGTTTCAACCCACGG
TGGGACACGGAGTTTGAGTTTGTGGTAGCAGTGCCTGACCTTGCCCTTGTACGTTTCATGGTAG
AGGATTATGACTCCTCCTCTAAGAACGACTTTATCGGCCAGAGTACTATCCCCTGGAACAGCCT
CAAGCAGGGGTACCGCCATGTCCACCTCTTGTCTAAGAATGGAGACCTGCATCCATCAGCCACT
CTCTTTGTGAAGATCTCCATCCAGGACTAAGCCTGGGGGACTGACGCAGTCCGCCCTGAGTGGG
CGGAGCTGTGTCCACACCTGTCTGGCAATGTTGCACCTCTGGCGCGGAGCTTGAGGCCACTGAA
CTGCCTTCAGCTCTAACACATCGCCTGAGCTTCTACTTCTCTGGGGGTCCAGGAGCAGTCCAGT
CCCCGGAGTGGTCTAAAATTCCGTTAGGAACAACACTGCATCTCTCTCCCTACCCCTAGTTGAC
TTTAGGTTGTGAGTTTTTATATAAAAAAAAATAATAATCACAAGATAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001280577	(Get FASTA)	NCBI Sequence Viewer
	NP_062650	(Get FASTA)	NCBI Sequence Viewer
	XP_006512047	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAD00570	(Get FASTA)	NCBI Sequence Viewer
	AAD32616	(Get FASTA)	NCBI Sequence Viewer
	AAH15249	(Get FASTA)	NCBI Sequence Viewer
	AAH25798	(Get FASTA)	NCBI Sequence Viewer
	AEP68051	(Get FASTA)	NCBI Sequence Viewer
	BAC26096	(Get FASTA)	NCBI Sequence Viewer
	BAC38671	(Get FASTA)	NCBI Sequence Viewer
	EDL09242	(Get FASTA)	NCBI Sequence Viewer
	EDL09243	(Get FASTA)	NCBI Sequence Viewer
	Q8R3B1	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_062650 ⟸ NM_019676
- Peptide Label:	isoform 2
- UniProtKB:	Q8R3B1 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MDSGRDFLTLHGLQDDPDLQALLKGSQLLKVKSSSWRRERFYKLQEDCKTIWQESRKVMRSPES QLFSIEDIQEVRMGHRTEGLEKFARDIPEDRCFSIVFKDQRNTLDLIAPSPADVQHWVQGLRKI IDRSGSMDQRQKLQHWIHSCLRKADKNKDNKMNFKEVKDFLKELNVQVDDSYARKIFRECDHSQ TDSLEDEEIETFYRMLTQRAEIDRAFAEAAGSAETLSVEKLVTFLQHQQREEEAGPALALSLIE RYEPSETAKAQRQMTKDGFLMYLLSADGNAFSLAHRRVYQDMNQPLSHYLVSSSHNTYLLEDQL TGPSSTEAYIRALCKGCRCLELDCWDGPNQEPIIYHGYTFTSKILFCDVLRAIRDYAFKASPYP VILSLENHCSLEQQRVMAHHLRAILGPMLLDQPLDGVTTSLPSPEQLKEKILLKGKKLGGLLPA GGENGPEATDVSDEDEAAEMEDEAVRSQVQHKPKEDKLKLVPELSDMVIYCKSVHFGGFSSPST SGQAFYEMASFSESRALRLLQESGNSFVRHNVGHLSRIYPAGWRTDSSNYSPVEMWNGGCQIVA LNFQTPGPEMDVYLGCFQDNGGCGYVLKPAFLRDPDTTFNSRALTQGPWWAPKKLRVWIISGQQ LPKVNKNKNSIVDPKVIVEIHGVGQDVASRQTAVITNNGFNPRWDTEFEFVVAVPDLALVRFMV EDYDSSSKNDFIGQSTIPWNSLKQGYRHVHLLSKNGDLHPSATLFVKISIQD hide sequence

RefSeq Acc Id:

XP_006512047 ⟸ XM_006511984

- Peptide Label:

isoform X1

- Sequence:

show sequence

MRSPESQLFSIEDIQEVRMGHRTEGLEKFARDIPEDRCFSIVFKDQRNTLDLIAPSPADVQHWV
QGLRKIIDRSGSMDQRQKLQHWIHSCLRKADKNKDNKMNFKEVKDFLKELNVQVDDSYARKIFR
ECDHSQTDSLEDEEIETFYRMLTQRAEIDRAFAEAAGSAETLSVEKLVTFLQHQQREEEAGPAL
ALSLIERYEPSETAKAQRQMTKDGFLMYLLSADGNAFSLAHRRVYQDMNQPLSHYLVSSSHNTY
LLEDQLTGPSSTEAYIRALCKGCRCLELDCWDGPNQEPIIYHGYTFTSKILFCDVLRAIRDYAF
KASPYPVILSLENHCSLEQQRVMAHHLRAILGPMLLDQPLDGVTTSLPSPEQLKEKILLKGKKL
GGLLPAGGENGPEATDVSDEDEAAEMEDEAVRSQVQHKPKEDKLKLVPELSDMVIYCKSVHFGG
FSSPSTSGQAFYEMASFSESRALRLLQESGNSFVRHNVGHLSRIYPAGWRTDSSNYSPVEMWNG
GCQIVALNFQTPGPEMDVYLGCFQDNGGCGYVLKPAFLRDPDTTFNSRALTQGPWWAPKKLRVW
IISGQQLPKVNKNKNSIVDPKVIVEIHGVGQDVASRQTAVITNNGFNPRWDTEFEFVVAVPDLA
LVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHLLSKNGDLHPSATLFVKISIQD

hide sequence

RefSeq Acc Id:	NP_001280577 ⟸ NM_001293648
- Peptide Label:	isoform 1
- UniProtKB:	Q8R3B1 (UniProtKB/Swiss-Prot), G5DDB7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQCLGVRSCRRGSVNRSRELYLQEQSRKVAALNGQRLGLQDDPDLQALLKGSQLLKVKSSSWRR ERFYKLQEDCKTIWQESRKVMRSPESQLFSIEDIQEVRMGHRTEGLEKFARDIPEDRCFSIVFK DQRNTLDLIAPSPADVQHWVQGLRKIIDRSGSMDQRQKLQHWIHSCLRKADKNKDNKMNFKEVK DFLKELNVQVDDSYARKIFRECDHSQTDSLEDEEIETFYRMLTQRAEIDRAFAEAAGSAETLSV EKLVTFLQHQQREEEAGPALALSLIERYEPSETAKAQRQMTKDGFLMYLLSADGNAFSLAHRRV YQDMNQPLSHYLVSSSHNTYLLEDQLTGPSSTEAYIRALCKGCRCLELDCWDGPNQEPIIYHGY TFTSKILFCDVLRAIRDYAFKASPYPVILSLENHCSLEQQRVMAHHLRAILGPMLLDQPLDGVT TSLPSPEQLKEKILLKGKKLGGLLPAGGENGPEATDVSDEDEAAEMEDEAVRSQVQHKPKEDKL KLVPELSDMVIYCKSVHFGGFSSPSTSGQAFYEMASFSESRALRLLQESGNSFVRHNVGHLSRI YPAGWRTDSSNYSPVEMWNGGCQIVALNFQTPGPEMDVYLGCFQDNGGCGYVLKPAFLRDPDTT FNSRALTQGPWWAPKKLRVWIISGQQLPKVNKNKNSIVDPKVIVEIHGVGQDVASRQTAVITNN GFNPRWDTEFEFVVAVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHLLSKNGDL HPSATLFVKISIQD hide sequence

RefSeq Acc Id:

ENSMUSP00000149676 ⟸ ENSMUST00000213464

RefSeq Acc Id:

ENSMUSP00000010804 ⟸ ENSMUST00000010804

RefSeq Acc Id:

ENSMUSP00000149813 ⟸ ENSMUST00000214470

Protein Domains

C2 EF-hand PH PI-PLC X-box PI-PLC Y-box

Promoters

RGD ID:

6848449

Promoter ID:

MM_ACW:52396

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, ES_Cell, Kidney, Lung, MEF_B4, MEF_B6

Transcripts:

PLCD1.DSEP07

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	9	118,997,374 - 118,997,874 (-)	MPROMDB

RGD ID:

6844957

Promoter ID:

MM_KWN:59112

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, Brain, Kidney, Lung, MEF_B4, MEF_B6

Transcripts:

ENSMUST00000010804

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	9	119,002,414 - 119,002,914 (-)	MPROMDB

RGD ID:

8671174

Promoter ID:

EPDNEW_M13618

Type:

multiple initiation site

Name:

Plcd1_1

Description:

Mus musculus phospholipase C, delta 1 , transcript variant 3,non-coding RNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	9	119,093,492 - 119,093,552	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:97614	AgrOrtholog
Ensembl Genes	ENSMUSG00000010660	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSMUSP00000010804	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUSP00000149676	UniProtKB/TrEMBL
	ENSMUSP00000149813	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000010804	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUST00000213464	ENTREZGENE, UniProtKB/TrEMBL
	ENSMUST00000214470	ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH	2.30.29.30	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	2.60.40.150	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	3.20.20.190	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	C2_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	C2_domain_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	EF-hand-dom_pair	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	EF_Hand_1_Ca_BS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	EF_hand_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PH-like_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PH_domain	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PI-PLC_fam	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PLC-delta1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PLC-like_Pdiesterase_TIM-brl	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PLC_EF-hand-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PLipase_C_PInositol-sp_X_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PLipase_C_Pinositol-sp_Y	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:18799	UniProtKB/Swiss-Prot
MGD	MGI:97614	ENTREZGENE
NCBI Gene	18799	ENTREZGENE
PANTHER	PTHR10336	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR10336:SF80	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	EF-hand_like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PF00168	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PH_12	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PI-PLC-X	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PI-PLC-Y	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Plcd1	PhenoGen
PRINTS	PHPHLIPASEC	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	EF_HAND_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	EF_HAND_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PH_DOMAIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PIPLC_X_DOMAIN	UniProtKB/Swiss-Prot
	PIPLC_Y_DOMAIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PS50004	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	PLCXc	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PLCYc	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SM00233	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SM00239	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF47473	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF51695	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene	Mm.23963	ENTREZGENE
UniProt	G5DDB7	ENTREZGENE, UniProtKB/TrEMBL
	PLCD1_MOUSE	UniProtKB/Swiss-Prot
	Q05DG3_MOUSE	UniProtKB/TrEMBL
	Q8R3B1	ENTREZGENE
UniProt Secondary	Q9Z1B4	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)