Cd274 (CD274 antigen) - Rat Genome Database

Name: Cd274
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Cd274 (CD274 antigen) Mus musculus

Analyze

Symbol:

Cd274

Name:

CD274 antigen

RGD ID:

1553554

MGI Page

MGI

Description:

Is expressed in retina and thymus primordium. Orthologous to human CD274 (CD274 molecule).

Type:

protein-coding

RefSeq Status:

REVIEWED

Also known as:

A530045L16Rik; B7 homolog 1; B7h1; PD-; PDCD1 ligand 1; Pdcd1l; Pdcd1l1; Pdcd1lg1; Pdl1; programmed cell death 1 ligand 1; programmed death ligand 1; RIKEN cDNA A530045L16 gene

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CD274 (CD274 molecule)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Cd274 (CD274 molecule)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Cd274 (CD274 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CD274 (CD274 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CD274 (CD274 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cd274 (CD274 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CD274 (CD274 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	CD274 (CD274 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cd274 (CD274 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Cd274 (CD274 molecule)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Homo sapiens (human):	CD274 (CD274 molecule)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	29,339,428 - 29,365,495 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	19	29,344,855 - 29,365,495 (+)	Ensembl
GRCm38	19	29,362,107 - 29,388,095 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	29,367,455 - 29,388,095 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	29,441,928 - 29,462,585 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	19	29,433,452 - 29,454,092 (+)	NCBI			mm8
Celera	19	30,144,050 - 30,164,685 (+)	NCBI		Celera
Cytogenetic Map	19	C1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

acute myocarditis (IEP)

adult T-cell leukemia (ISO)

allergic disease (ISO)

alveolar echinococcosis (IMP)

anti-basement membrane glomerulonephritis (IMP)

asthma (IMP)

autoimmune hepatitis (IEP)

cervix uteri carcinoma in situ (ISO)

Chlamydia pneumonia (IEP)

Chronic Hepatitis B (IMP,ISO)

Chronic Hepatitis C (ISO)

colon cancer (IMP)

Corneal Graft Rejection (ISO)

Coxsackievirus Infections (IDA)

cryptococcal meningitis (ISO)

cutaneous leishmaniasis (IMP)

Disease Progression (ISO)

Fungemia (IMP)

Hepatic Echinococcosis (IEP)

hepatitis C (ISO)

hepatocellular carcinoma (ISO)

herpes simplex (IMP)

herpes simplex virus keratitis (IMP)

histoplasmosis (IEP)

human immunodeficiency virus infectious disease (ISO)

influenza (ISO)

Lung Neoplasms (ISO)

lymphocytic choriomeningitis (IMP)

lymphoma (ISO)

Mammary Neoplasms, Experimental (ISO)

nasal type extranodal NK/T-cell lymphoma (ISO)

Neoplasm Metastasis (ISO)

Neoplasms, Radiation-Induced (ISO)

ovarian cancer (IMP)

papillomavirus infectious disease (ISO)

periodontitis (ISO)

pre-eclampsia (ISO)

primary progressive multiple sclerosis (IMP)

pulmonary tuberculosis (ISO)

rabies (IMP)

Recurrence (ISO)

Recurrent Respiratory Papillomatosis (ISO)

respiratory syncytial virus infectious disease (IEP,IMP)

Retroviridae Infections (IMP)

Sepsis (ISO)

Spinal Cord Injuries (ISO)

stomach cancer (ISO)

substance-related disorder (ISO)

Thymus Neoplasms (ISO)

toxic shock syndrome (ISO)

Transplant Rejection (IMP)

tuberculosis (ISO)

Viral Bronchiolitis (IEP,IMP)

viral encephalitis (IEP,IMP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

1,2-dimethylhydrazine (EXP)

1,4-phenylenediamine (ISO)

1-chloro-2,4-dinitrobenzene (ISO)

1-naphthyl isothiocyanate (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2-hydroxypropanoic acid (ISO)

3-phenylprop-2-enal (ISO)

4,4'-diaminodiphenylmethane (EXP)

5-fluorouracil (ISO)

acetamide (ISO)

acetylsalicylic acid (ISO)

aflatoxin B1 (ISO)

aripiprazole (ISO)

benzalkonium chloride (EXP)

benzo[a]pyrene (EXP,ISO)

bisphenol A (ISO)

bromobenzene (ISO)

buta-1,3-diene (EXP)

butanal (ISO)

cadmium atom (ISO)

calcitriol (ISO)

cannabidiol (EXP)

carbon nanotube (EXP)

carboplatin (ISO)

chloroquine (ISO)

chlorpromazine (ISO)

cisplatin (ISO)

decabromodiphenyl ether (ISO)

dexamethasone (EXP)

dextran sulfate (EXP)

dioxygen (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (ISO)

estriol (EXP)

ethyl methanesulfonate (ISO)

etoposide (ISO)

eugenol (ISO)

ferric oxide (EXP)

folic acid (ISO)

formaldehyde (ISO)

furan (ISO)

imiquimod (EXP)

isoeugenol (ISO)

kojic acid (ISO)

leflunomide (ISO)

lipopolysaccharide (EXP,ISO)

LY294002 (ISO)

methotrexate (ISO)

methyl methanesulfonate (ISO)

nickel atom (ISO)

nickel sulfate (ISO)

oxaliplatin (ISO)

ozone (ISO)

paclitaxel (ISO)

paracetamol (EXP,ISO)

pentachlorophenol (EXP)

pentanal (ISO)

phenformin (ISO)

phenobarbital (EXP)

platycodin D (ISO)

protein kinase inhibitor (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

rotenone (ISO)

SB 431542 (ISO)

silicon dioxide (EXP,ISO)

sodium arsenite (ISO)

succimer (EXP)

sunitinib (ISO)

testosterone (ISO)

tetrachloromethane (EXP)

thioacetamide (ISO)

thyroxine (ISO)

titanium dioxide (EXP)

trans-isoeugenol (ISO)

trichostatin A (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (ISO)

vincristine (ISO)

zearalenone (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adaptive immune response (IEA)

cell surface receptor signaling pathway (IBA,ISO)

cellular response to lipopolysaccharide (IBA)

immune response (IBA,ISO)

immune system process (IEA)

negative regulation of activated T cell proliferation (ISO)

negative regulation of CD4-positive, alpha-beta T cell proliferation (ISO)

negative regulation of CD8-positive, alpha-beta T cell activation (ISO)

negative regulation of interferon-gamma production (ISO)

negative regulation of interleukin-10 production (ISO)

negative regulation of T cell proliferation (IBA,IDA)

negative regulation of tumor necrosis factor superfamily cytokine production (ISO)

positive regulation of activated CD8-positive, alpha-beta T cell apoptotic process (ISO)

positive regulation of cell migration (ISO)

positive regulation of interleukin-10 production (ISO)

positive regulation of T cell proliferation (IBA,ISO)

positive regulation of tolerance induction to tumor cell (ISO)

regulation of activated CD4-positive, alpha-beta T cell apoptotic process (ISO)

regulation of activated T cell proliferation (ISO)

regulation of T cell apoptotic process (ISO)

response to cytokine (ISO)

signal transduction (ISO)

T cell costimulation (IBA,ISO)

toxin transport (IMP)

Cellular Component

actin cytoskeleton (ISO)

cell surface (ISO)

early endosome membrane (ISO)

endosome (IEA)

external side of plasma membrane (IBA,IDA)

extracellular exosome (ISO)

integral component of membrane (IEA)

membrane (IEA)

nucleoplasm (ISO)

plasma membrane (ISO)

recycling endosome membrane (ISO)

Molecular Function

protein binding (IPI,ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal CD4-positive, alpha beta T cell morphology (IAGP)

abnormal CD8-positive, alpha beta T cell morphology (IAGP)

abnormal CD8-positive, alpha-beta T cell physiology (IAGP)

abnormal chemokine secretion (IAGP)

abnormal cytokine secretion (IAGP)

abnormal dendritic cell physiology (IAGP)

abnormal immune system physiology (IEA)

abnormal interleukin secretion (IAGP)

abnormal regulatory T cell physiology (IAGP)

abnormal T cell activation (IAGP)

abnormal T cell morphology (IAGP)

abnormal T follicular helper cell physiology (IAGP)

abnormal T-helper 1 cell differentiation (IAGP)

decreased CD8-positive, alpha-beta T cell number (IAGP)

decreased germinal center B cell number (IAGP)

decreased IgG1 level (IAGP)

decreased IgG2a level (IAGP)

decreased interleukin-17 secretion (IAGP)

decreased interleukin-4 secretion (IAGP)

decreased plasma cell number (IAGP)

decreased susceptibility to parasitic infection (IAGP)

decreased susceptibility to Riboviria infection (IAGP)

decreased susceptibility to Riboviria infection induced morbidity/mortality (IAGP)

decreased T cell apoptosis (IAGP)

decreased T helper 1 cell number (IAGP)

decreased T-helper 17 cell number (IAGP)

hyperresponsive to tactile stimuli (IAGP)

increased activated T cell number (IAGP)

increased CD8-positive, alpha-beta T cell number (IAGP)

increased IgG1 level (IAGP)

increased IgG2c level (IAGP)

increased interferon-gamma secretion (IAGP)

increased interleukin-2 secretion (IAGP)

increased interleukin-4 secretion (IAGP)

increased susceptibility to autoimmune diabetes (IAGP)

increased susceptibility to autoimmune disorder (IAGP)

increased susceptibility to bacterial infection (IAGP)

increased susceptibility to bacterial infection induced morbidity/mortality (IAGP)

increased susceptibility to experimental autoimmune encephalomyelitis (IAGP)

increased susceptibility to induced arthritis (IAGP)

increased susceptibility to injury (IAGP)

increased T cell number (IAGP)

increased T cell proliferation (IAGP)

increased tumor necrosis factor secretion (IAGP)

lethality throughout fetal growth and development, incomplete penetrance (IAGP)

References

References - curated


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Additional References at PubMed

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PMID:24606770	PMID:24639353	PMID:24696476	PMID:24778419	PMID:24794706	PMID:24848257	PMID:24890099	PMID:24978830	PMID:25027060	PMID:25047812	PMID:25053811	PMID:25057927
PMID:25070848	PMID:25144375	PMID:25173046	PMID:25299080	PMID:25332429	PMID:25348003	PMID:25404361	PMID:25445618	PMID:25479230	PMID:25488990	PMID:25609381	PMID:25624454
PMID:25877928	PMID:25889536	PMID:25902191	PMID:25924065	PMID:25934860	PMID:25964334	PMID:26043977	PMID:26105028	PMID:26214513	PMID:26247556	PMID:26266810	PMID:26378076
PMID:26484769	PMID:26599163	PMID:26601142	PMID:26755818	PMID:26775640	PMID:26824266	PMID:26847035	PMID:26895637	PMID:26990974	PMID:27294527	PMID:27295261	PMID:27371844
PMID:27378243	PMID:27396388	PMID:27463676	PMID:27533014	PMID:27556047	PMID:27671636	PMID:27731324	PMID:27809306	PMID:27824138	PMID:27835902	PMID:27911948	PMID:27935862
PMID:27966604	PMID:28079159	PMID:28220772	PMID:28254435	PMID:28302645	PMID:28414296	PMID:28414328	PMID:28423181	PMID:28427861	PMID:28436428	PMID:28530662	PMID:28570665
PMID:28665401	PMID:28687491	PMID:28736328	PMID:28744199	PMID:28747424	PMID:28768724	PMID:28777458	PMID:28819064	PMID:28848055	PMID:28912267	PMID:28917991	PMID:28935898
PMID:28953925	PMID:28974543	PMID:29018057	PMID:29028305	PMID:29246442	PMID:29250533	PMID:29272267	PMID:29282253	PMID:29337303	PMID:29337305	PMID:29377881	PMID:29480817
PMID:29493401	PMID:29504948	PMID:29531164	PMID:29568117	PMID:29602773	PMID:29617057	PMID:29665734	PMID:29735482	PMID:29752314	PMID:29765039	PMID:29776963	PMID:29793310
PMID:29844327	PMID:29867974	PMID:29995830	PMID:30012633	PMID:30045970	PMID:30076099	PMID:30089911	PMID:30095976	PMID:30213644	PMID:30315115	PMID:30341238	PMID:30357491
PMID:30382149	PMID:30385408	PMID:30456891	PMID:30567732	PMID:30619369	PMID:30709740	PMID:30763282	PMID:30765734	PMID:30791745	PMID:30804928	PMID:30850589	PMID:30873585
PMID:30927016	PMID:30975083	PMID:30978356	PMID:31000591	PMID:31037153	PMID:31180054	PMID:31197205	PMID:31305264	PMID:31379842	PMID:31482256	PMID:31503548	PMID:31604033
PMID:31656199	PMID:31729316	PMID:31865052	PMID:31907984	PMID:31994912	PMID:32048861	PMID:32198140	PMID:32347357	PMID:32520957	PMID:32527950	PMID:32610128	PMID:32623477
PMID:32632663	PMID:32633234	PMID:32641478	PMID:32698011	PMID:32973173	PMID:33229527

Genomics

Comparative Map Data

Cd274
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	29,339,428 - 29,365,495 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	19	29,344,855 - 29,365,495 (+)	Ensembl
GRCm38	19	29,362,107 - 29,388,095 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	29,367,455 - 29,388,095 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	29,441,928 - 29,462,585 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	19	29,433,452 - 29,454,092 (+)	NCBI			mm8
Celera	19	30,144,050 - 30,164,685 (+)	NCBI		Celera
Cytogenetic Map	19	C1	NCBI

CD274
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	9	5,450,503 - 5,470,566 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	9	5,450,542 - 5,470,554 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	9	5,450,542 - 5,470,554 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	5,440,559 - 5,458,477 (+)	NCBI	NCBI36		hg18	NCBI36
Celera	9	5,376,139 - 5,396,204 (+)	NCBI
Cytogenetic Map	9	p24.1	NCBI
HuRef	9	5,406,210 - 5,426,274 (+)	NCBI		HuRef
CHM1_1	9	5,450,664 - 5,470,759 (+)	NCBI		CHM1_1

Cd274
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	1	227,116,627 - 227,137,379 (+)	NCBI
Rnor_6.0 Ensembl	1	247,519,939 - 247,537,943 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	1	247,519,890 - 247,539,659 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	1	254,768,528 - 254,788,292 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	233,053,607 - 233,065,384 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	1	224,273,306 - 224,285,083 (+)	NCBI		Celera
Cytogenetic Map	1	q52	NCBI

Cd274
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955434	9,487,315 - 9,505,904 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955434	9,487,309 - 9,508,366 (+)	NCBI	ChiLan1.0	ChiLan1.0

CD274
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	9	5,454,391 - 5,474,452 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	5,454,391 - 5,474,402 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	9	5,269,270 - 5,289,629 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

CD274
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	1	93,585,518 - 93,603,522 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	1	93,461,735 - 93,605,772 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Cd274
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936539	132,870 - 145,288 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CD274
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	216,660,047 - 216,792,724 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	216,646,378 - 216,792,731 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	242,395,402 - 242,416,220 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CD274
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	74,038,844 - 74,060,662 (-)	NCBI
ChlSab1.1 Ensembl	12	74,041,767 - 74,056,806 (-)	Ensembl

Cd274
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624736	9,991,851 - 10,017,047 (+)	NCBI

Position Markers

Cd274

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	19	C2	UniSTS
cM Map	19		UniSTS

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1301271	Datd_m	dopamine transporter density (mouse)			Not determined		19	1	32362870	Mouse
4142406	Pbctlp1_m	peripheral blood cytotoxic T lymphocyte percentage 1 (mouse)			Not determined			1	32897810	Mouse
1300904	Chab5_m	cholesterol absorption 5 (mouse)			Not determined		19	1676400	35676563	Mouse
26884385	Skwq14_m	skull length QTL 14, 16 week (mouse)					19	3200000	35900000	Mouse
1300923	Bits4_m	bitterness sensitivity 4 (mouse)			Not determined		19	3345852	37345984	Mouse
1301800	Faq10_m	fluctuating asymmetry QTL 10 (mouse)			Not determined		19	3345852	37345984	Mouse
1300591	Pas3_m	pulmonary adenoma susceptibility 3 (mouse)			Not determined		19	3345852	37345984	Mouse
1302126	Skull26_m	skull morphology 26 (mouse)			Not determined		19	3345852	37345984	Mouse
11039522	Tbbr4_m	Trypanosoma brucei brucei response 4 (mouse)					19	5335962	39336106	Mouse
1301228	Iba4_m	induction of brown adipocytes 4 (mouse)			Not determined		19	9328315	43328421	Mouse
1302019	Pgia23_m	proteoglycan induced arthritis 23 (mouse)			Not determined		19	9810053	43810202	Mouse
14928311	Manh85_m	mandible shape 85 (mouse)					19	11937389	45937389	Mouse
10413881	Moe2_m	modifier of epilepsy 2 (mouse)					19	14945616	48945738	Mouse
1301336	Alcp23_m	alcohol preference locus 23 (mouse)			Not determined		19	15935207	49935319	Mouse
1301633	Alcp24_m	alcohol preference locus 24 (mouse)			Not determined		19	15935207	49935319	Mouse
1302004	Lfp2_m	long free running period 2 (mouse)			Not determined		19	18317762	52317981	Mouse
1302063	Eae19_m	experimental allergic encephalomyelitis 19 (mouse)			Not determined		19	18317762	52317981	Mouse
4142343	Moen2_m	modifier of engrailed QTL 2 (mouse)			Not determined		19	20256915	54257062	Mouse
10412251	Mnp_m	modifier of Niemann Pick type C1 (mouse)			Not determined		19	20256915	54257062	Mouse
4141659	Pbwg20_m	postnatal body weight growth 20 (mouse)			Not determined		19	21390257	55390480	Mouse
1357596	Tgct3_m	testicular germ cell tumor 3 (mouse)			Not determined		19	22006727	32935319	Mouse
1558876	W3q14_m	weight 3 weeks QTL 14 (mouse)			Not determined		19	22335962	53923073	Mouse
12790634	Ebm1_m	Epidermolysis Bullosa modifier 1 (mouse)					19	25000000	59000000	Mouse
1302123	Tlsr8_m	thymic lymphoma suppressor region 8 (mouse)			Not determined		19	25158638	42400477	Mouse
1301451	Ath16_m	atherosclerosis 16 (mouse)			Not determined		19	25438478	59438566	Mouse
13506250	Renmq1_m	renal mercury accumulation QTL 1 (mouse)					19	27397155	61397266	Mouse
1357568	Tgct4_m	testicular germ cell tumor 4 (mouse)			Not determined		19	27794585	35317981	Mouse
4141138	Femwf11_m	femur work to failure 11 (mouse)			Not determined			28151909	61431566	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	891
Count of miRNA genes:	526
Interacting mature miRNAs:	637
Transcripts:	ENSMUST00000016640
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_021893	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_030251020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_030251021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC119228	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF233517	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF317088	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AI645624	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK080003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK089307	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK154403	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC066841	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY193530	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466534	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GQ904196	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000016640 ⟹ ENSMUSP00000016640

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	19	29,367,455 - 29,388,095 (+)	Ensembl

RefSeq Acc Id:

NM_021893 ⟹ NP_068693

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	19	29,344,838 - 29,365,495 (+)	NCBI
GRCm38	19	29,367,438 - 29,388,095 (+)	ENTREZGENE
MGSCv37	19	29,441,928 - 29,462,585 (+)	RGD
Celera	19	30,144,050 - 30,164,685 (+)	RGD
cM Map	19		ENTREZGENE

Sequence:

show sequence

GAAATCGTGGTCCCCAAGCCTCATGCCAGGCTGCACTTGCACGTCGCGGGCCAGTCTCCTCGCC
TGCAGATAGTTCCCAAAACATGAGGATATTTGCTGGCATTATATTCACAGCCTGCTGTCACTTG
CTACGGGCGTTTACTATCACGGCTCCAAAGGACTTGTACGTGGTGGAGTATGGCAGCAACGTCA
CGATGGAGTGCAGATTCCCTGTAGAACGGGAGCTGGACCTGCTTGCGTTAGTGGTGTACTGGGA
AAAGGAAGATGAGCAAGTGATTCAGTTTGTGGCAGGAGAGGAGGACCTTAAGCCTCAGCACAGC
AACTTCAGGGGGAGAGCCTCGCTGCCAAAGGACCAGCTTTTGAAGGGAAATGCTGCCCTTCAGA
TCACAGACGTCAAGCTGCAGGACGCAGGCGTTTACTGCTGCATAATCAGCTACGGTGGTGCGGA
CTACAAGCGAATCACGCTGAAAGTCAATGCCCCATACCGCAAAATCAACCAGAGAATTTCCGTG
GATCCAGCCACTTCTGAGCATGAACTAATATGTCAGGCCGAGGGTTATCCAGAAGCTGAGGTAA
TCTGGACAAACAGTGACCACCAACCCGTGAGTGGGAAGAGAAGTGTCACCACTTCCCGGACAGA
GGGGATGCTTCTCAATGTGACCAGCAGTCTGAGGGTCAACGCCACAGCGAATGATGTTTTCTAC
TGTACGTTTTGGAGATCACAGCCAGGGCAAAACCACACAGCGGAGCTGATCATCCCAGAACTGC
CTGCAACACATCCTCCACAGAACAGGACTCACTGGGTGCTTCTGGGATCCATCCTGTTGTTCCT
CATTGTAGTGTCCACGGTCCTCCTCTTCTTGAGAAAACAAGTGAGAATGCTAGATGTGGAGAAA
TGTGGCGTTGAAGATACAAGCTCAAAAAACCGAAATGATACACAATTCGAGGAGACGTAAGCAG
TGTTGAACCCTCTGATCGTCGATTGGCAGCTTGTGGTCTGTGAAAGAAAGGGCCCATGGGACAT
GAGTCCAAAGACTCAAGATGGAACCTGAGGGAGAGAACCAAGAAAGTGTTGGGAGAGGAGCCTG
GAACAACGGACATTTTTTCCAGGGAGACACTGCTAAGCAAGTTGCCCATCAGTCGTCTTGGGAA
ATGGATTGAGGGTTCCTGGCTTAGCAGCTGGTCCTTGCACAGTGACCTTTTCCTCTGCTCAGTG
CCGGGATGAGAGATGGAGTCATGAGTGTTGAAGAATAAGTGCCTTCTATTTATTTTGAGTCTGT
GTGTTCTCACTTTGGGCATGTAATTATGACTGGTGAATTCTGACGACATGATAGATCTTAAGAT
GTAGTCACCAAACTCAACTGCTGCTTAGCATCCTCCGTAACTACTGATACAAGCAGGGAACACA
GAGGTCACCTGCTTGGTTTGACAGGCTCTTGCTGTCTGACTCAAATAATCTTTATTTTTCAGTC
CTCAAGGCTCTTCGATAGCAGTTGTTCTGTATCAGCCTTATAGGTGTCAGGTATAGCACTCAAC
ATCTCATCTCATTACAATAGCAACCCTCATCACCATAGCAACAGCTAACCTCTGTTATCCTCAC
TTCATAGCCAGGAAGCTGAGCGACTAAGTCACTTGCCCACAGAGTATCAGCTCTCAGATTTCTG
TTCTTCAGCCACTGTCCTTTCAGGATAGAATTTGTCGTTAAGAAATTAATTTAAAAACTGATTA
TTGAGTAGCATTGTATATCAATCACAACATGCCTTGTGCACTGTGCTGGCCTCTGAGCATAAAG
ATGTACGCCGGAGTACCGGTCGGACATGTTTATGTGTGTTAAATACTCAGAGAAATGTTCATTA
ACAAGGAGCTTGCATTTTAGAGACACTGGAAAGTAACTCCAGTTCATTGTCTAGCATTACATTT
ACCTCATTTGCTATCCTTGCCATACAGTCTCTTGTTCTCCATGAAGTGTCATGAATCTTGTTGA
ATAGTTCTTTTATTTTTTAAATGTTTCTATTTAAATGATATTGACATCTGAGGCGATAGCTCAG
TTGGTAAAACCCTTTCCTCACAAGTGTGAAACCCTGAGTCTTATCCCTAGAACCCACATAAAAA
ACAGTTGCGTATGTTTGTGCATGCTTTTGATCCCAGCACTAGGGAGGCAGAGGCAGGCAGATCC
TGAGCTCTCATTGACCACCCAGCCTAGCCTACATGGTTAGCTCCAGGCCTACAGGAGCTGGCAG
AGCCTGAAAAACGATGCCTAGACACACACACACACACACACACACACACACACACACACACACA
CCATGTACTCATAGACCTAAGTGCACCCTCCTACACATGCACACACATACAATTCAAACACAAA
TCAACAGGGAATTGTCTCAGAATGGTCCCCAAGACAAAGAAGAAGAAAAACACCAAACCAGCTC
TATTCCCTCAGCCTATCCTCTCTACTCCTTCCTAGAAGCAACTACTATTGTTTTTGTATATAAA
TTTACCCAACGACAGTTAATATGTAGAATATATATTAAAGTGTCTGTCAATATATATTATCTCT
TTCTTTCTTTCTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT
TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTTTTTTCTGTCT
ATCTGTACCTAAATGGTTGCTCACTATGCATTTTCTGTGCTCTTCGCCCTTTTTATTTAATGTA
TGGATATTTATGCTGCTTCCAGAATGGATCTAAAGCTCTTTGTTTCTAGGTTTTCTCCCCCATC
CTTCTAGGCATCTCTCACACTGTCTAGGCCAGACACCATGTCTGCTGCCTGAATCTGTAGACAC
CATTTATAAAGCACGTACTCACCGAGTTTGTATTTGGCTTGTTCTGTGTCTGATTAAAGGGAGA
CCATGAGTCCCCAGGGTACACTGAGTTACCCCAGTACCAAGGGGGAGCCTTGTTTGTGTCTCCA
TGGCAGAAGCAGGCCTGGAGCCATTTTGGTTTCTTCCTTGACTTCTCTCAAACACAGACGCCTC
ACTTGCTCATTACAGGTTCTCCTTTGGGAATGTCAGCATTGCTCCTTGACTGCTGGCTGCCCTG
GAAGGAGCCCATTAGCTCTGTGTGAGCCCTTGACAGCTACTGCCTCTCCTTACCACAGGGGCCT
CTAAGATACTGTTACCTAGAGGTCTTGAGGATCTGTGTTCTCTGGGGGGAGGAAAGGAGGAGGA
ACCCAGAACTTTCTTACAGTTTTCCTTGTTCTGTCACATGTCAAGACTGAAGGAACAGGCTGGG
CTACGTAGTGAGATCCTGTCTCAAAGGAAAGACGAGCATAGCCGAACCCCCGGTGGAACCCCCT
CTGTTACCTGTTCACACAAGCTTATTGATGAGTCTCATGTTAATGTCTTGTTTGTATGAAGTTT
AAGAAAATATCGGGTTGGGCAACACATTCTATTTATTCATTTTATTTGAAATCTTAATGCCATC
TCATGGTGTTGGATTGGTGTGGCACTTTATTCTTTTGTGTTGTGTATAACCATAAATTTTATTT
TGCATCAGATTGTCAATGTATTGCATTAATTTAATAAATATTTTTATTTATTAAAAAAAAAAAA
AAAAA

hide sequence

RefSeq Acc Id:

XM_030251020 ⟹ XP_030106880

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	19	29,339,428 - 29,365,495 (+)	NCBI
GRCm38	19	29,362,107 - 29,388,095 (+)	NCBI

Sequence:

show sequence

GTGGAAATGTTTCAAGTCCTCGGAGTCCGGTGCCTCAAAAACAAAACAAAAACAACAACAAAAC
CCATCACCAAATCTCGCTTAAAGCCTCTCAGTAGCAGCCCGGTTGTCTTGGAGCTCTCTCTATA
GACCAGAGACTCACCTGCCACTGGCTCCTGAGTACTGGAATTAAGGCGTGTGTCACCGCACCGA
AGCCTAGTTTCGTTTTTTCTTAAACTGTGAATATCCCAAAGCTGACTCTAAAGTCATCCGCAGG
AAATACTATGAGATAAACTCATGCTCAAAGGGACTGGGTGGCTTCGGTTTCACAGACAGCGGAG
GTTGGACAAGGCTTCCGCGGAGTGGGCGGGGCTCTGAACTCGAGATAAGACCAGGAAATCGTGG
TCCCCAAGCCTCATGCCAGGCTGCACTTGCACGTCGCGGGCCAGTCTCCTCGCCTGCAGATAGT
TCCCAAAACATGAGGATATTTGCTGGCATTATATTCACAGCCTGCTGTCACTTGCTACGGGCGT
TTACTATCACGGCTCCAAAGGACTTGTACGTGGTGGAGTATGGCAGCAACGTCACGATGGAGTG
CAGATTCCCTGTAGAACGGGAGCTGGACCTGCTTGCGTTAGTGGTGTACTGGGAAAAGGAAGAT
GAGCAAGTGATTCAGTTTGTGGCAGGAGAGGAGGACCTTAAGCCTCAGCACAGCAACTTCAGGG
GGAGAGCCTCGCTGCCAAAGGACCAGCTTTTGAAGGGAAATGCTGCCCTTCAGATCACAGACGT
CAAGCTGCAGGACGCAGGCGTTTACTGCTGCATAATCAGCTACGGTGGTGCGGACTACAAGCGA
ATCACGCTGAAAGTCAATGCCCCATACCGCAAAATCAACCAGAGAATTTCCGTGGATCCAGCCA
CTTCTGAGCATGAACTAATATGTCAGGCCGAGGGTTATCCAGAAGCTGAGGTAATCTGGACAAA
CAGTGACCACCAACCCGTGAGTGGGAAGAGAAGTGTCACCACTTCCCGGACAGAGGGGATGCTT
CTCAATGTGACCAGCAGTCTGAGGGTCAACGCCACAGCGAATGATGTTTTCTACTGTACGTTTT
GGAGATCACAGCCAGGGCAAAACCACACAGCGGAGCTGATCATCCCAGAACTGCCTGCAACACA
TCCTCCACAGAACAGGACTCACTGGGTGCTTCTGGGATCCATCCTGTTGTTCCTCATTGTAGTG
TCCACGGTCCTCCTCTTCTTGAGAAAACAAGTGAGAATGCTAGATGTGGAGAAATGTGGCGTTG
AAGATACAAGCTCAAAAAACCGAAATGATACACAATTCGAGGAGACGTAAGCAGTGTTGAACCC
TCTGATCGTCGATTGGCAGCTTGTGGTCTGTGAAAGAAAGGGCCCATGGGACATGAGTCCAAAG
ACTCAAGATGGAACCTGAGGGAGAGAACCAAGAAAGTGTTGGGAGAGGAGCCTGGAACAACGGA
CATTTTTTCCAGGGAGACACTGCTAAGCAAGTTGCCCATCAGTCGTCTTGGGAAATGGATTGAG
GGTTCCTGGCTTAGCAGCTGGTCCTTGCACAGTGACCTTTTCCTCTGCTCAGTGCCGGGATGAG
AGATGGAGTCATGAGTGTTGAAGAATAAGTGCCTTCTATTTATTTTGAGTCTGTGTGTTCTCAC
TTTGGGCATGTAATTATGACTGGTGAATTCTGACGACATGATAGATCTTAAGATGTAGTCACCA
AACTCAACTGCTGCTTAGCATCCTCCGTAACTACTGATACAAGCAGGGAACACAGAGGTCACCT
GCTTGGTTTGACAGGCTCTTGCTGTCTGACTCAAATAATCTTTATTTTTCAGTCCTCAAGGCTC
TTCGATAGCAGTTGTTCTGTATCAGCCTTATAGGTGTCAGGTATAGCACTCAACATCTCATCTC
ATTACAATAGCAACCCTCATCACCATAGCAACAGCTAACCTCTGTTATCCTCACTTCATAGCCA
GGAAGCTGAGCGACTAAGTCACTTGCCCACAGAGTATCAGCTCTCAGATTTCTGTTCTTCAGCC
ACTGTCCTTTCAGGATAGAATTTGTCGTTAAGAAATTAATTTAAAAACTGATTATTGAGTAGCA
TTGTATATCAATCACAACATGCCTTGTGCACTGTGCTGGCCTCTGAGCATAAAGATGTACGCCG
GAGTACCGGTCGGACATGTTTATGTGTGTTAAATACTCAGAGAAATGTTCATTAACAAGGAGCT
TGCATTTTAGAGACACTGGAAAGTAACTCCAGTTCATTGTCTAGCATTACATTTACCTCATTTG
CTATCCTTGCCATACAGTCTCTTGTTCTCCATGAAGTGTCATGAATCTTGTTGAATAGTTCTTT
TATTTTTTAAATGTTTCTATTTAAATGATATTGACATCTGAGGCGATAGCTCAGTTGGTAAAAC
CCTTTCCTCACAAGTGTGAAACCCTGAGTCTTATCCCTAGAACCCACATAAAAAACAGTTGCGT
ATGTTTGTGCATGCTTTTGATCCCAGCACTAGGGAGGCAGAGGCAGGCAGATCCTGAGCTCTCA
TTGACCACCCAGCCTAGCCTACATGGTTAGCTCCAGGCCTACAGGAGCTGGCAGAGCCTGAAAA
ACGATGCCTAGACACACACACACACACACACACACACACACACACACACACACACCATGTACTC
ATAGACCTAAGTGCACCCTCCTACACATGCACACACATACAATTCAAACACAAATCAACAGGGA
ATTGTCTCAGAATGGTCCCCAAGACAAAGAAGAAGAAAAACACCAAACCAGCTCTATTCCCTCA
GCCTATCCTCTCTACTCCTTCCTAGAAGCAACTACTATTGTTTTTGTATATAAATTTACCCAAC
GACAGTTAATATGTAGAATATATATTAAAGTGTCTGTCAATATATATTATCTCTTTCTTTCTTT
CTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCTTCCTTC
CTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTTTTTTCTGTCTATCTGTACCT
AAATGGTTGCTCACTATGCATTTTCTGTGCTCTTCGCCCTTTTTATTTAATGTATGGATATTTA
TGCTGCTTCCAGAATGGATCTAAAGCTCTTTGTTTCTAGGTTTTCTCCCCCATCCTTCTAGGCA
TCTCTCACACTGTCTAGGCCAGACACCATGTCTGCTGCCTGAATCTGTAGACACCATTTATAAA
GCACGTACTCACCGAGTTTGTATTTGGCTTGTTCTGTGTCTGATTAAAGGGAGACCATGAGTCC
CCAGGGTACACTGAGTTACCCCAGTACCAAGGGGGAGCCTTGTTTGTGTCTCCATGGCAGAAGC
AGGCCTGGAGCCATTTTGGTTTCTTCCTTGACTTCTCTCAAACACAGACGCCTCACTTGCTCAT
TACAGGTTCTCCTTTGGGAATGTCAGCATTGCTCCTTGACTGCTGGCTGCCCTGGAAGGAGCCC
ATTAGCTCTGTGTGAGCCCTTGACAGCTACTGCCTCTCCTTACCACAGGGGCCTCTAAGATACT
GTTACCTAGAGGTCTTGAGGATCTGTGTTCTCTGGGGGGAGGAAAGGAGGAGGAACCCAGAACT
TTCTTACAGTTTTCCTTGTTCTGTCACATGTCAAGACTGAAGGAACAGGCTGGGCTACGTAGTG
AGATCCTGTCTCAAAGGAAAGACGAGCATAGCCGAACCCCCGGTGGAACCCCCTCTGTTACCTG
TTCACACAAGCTTATTGATGAGTCTCATGTTAATGTCTTGTTTGTATGAAGTTTAAGAAAATAT
CGGGTTGGGCAACACATTCTATTTATTCATTTTATTTGAAATCTTAATGCCATCTCATGGTGTT
GGATTGGTGTGGCACTTTATTCTTTTGTGTTGTGTATAACCATAAATTTTATTTTGCATCAGAT
TGTCAATGTATTGCATTAATTTAATAAATATTTTTATTTATTAAA

hide sequence

RefSeq Acc Id:

XM_030251021 ⟹ XP_030106881

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	19	29,344,845 - 29,365,495 (+)	NCBI
GRCm38	19	29,367,413 - 29,388,095 (+)	NCBI

Sequence:

show sequence

GGCTCTGAACTCGAGATAAGACCAGGAAATCGTGGTCCCCAAGCCTCATGCCAGGCTGCACTTG
CACGTCGCGGGCCAGTCTCCTCGCCTGCAGCGTTTACTATCACGGCTCCAAAGGACTTGTACGT
GGTGGAGTATGGCAGCAACGTCACGATGGAGTGCAGATTCCCTGTAGAACGGGAGCTGGACCTG
CTTGCGTTAGTGGTGTACTGGGAAAAGGAAGATGAGCAAGTGATTCAGTTTGTGGCAGGAGAGG
AGGACCTTAAGCCTCAGCACAGCAACTTCAGGGGGAGAGCCTCGCTGCCAAAGGACCAGCTTTT
GAAGGGAAATGCTGCCCTTCAGATCACAGACGTCAAGCTGCAGGACGCAGGCGTTTACTGCTGC
ATAATCAGCTACGGTGGTGCGGACTACAAGCGAATCACGCTGAAAGTCAATGCCCCATACCGCA
AAATCAACCAGAGAATTTCCGTGGATCCAGCCACTTCTGAGCATGAACTAATATGTCAGGCCGA
GGGTTATCCAGAAGCTGAGGTAATCTGGACAAACAGTGACCACCAACCCGTGAGTGGGAAGAGA
AGTGTCACCACTTCCCGGACAGAGGGGATGCTTCTCAATGTGACCAGCAGTCTGAGGGTCAACG
CCACAGCGAATGATGTTTTCTACTGTACGTTTTGGAGATCACAGCCAGGGCAAAACCACACAGC
GGAGCTGATCATCCCAGAACTGCCTGCAACACATCCTCCACAGAACAGGACTCACTGGGTGCTT
CTGGGATCCATCCTGTTGTTCCTCATTGTAGTGTCCACGGTCCTCCTCTTCTTGAGAAAACAAG
TGAGAATGCTAGATGTGGAGAAATGTGGCGTTGAAGATACAAGCTCAAAAAACCGAAATGATAC
ACAATTCGAGGAGACGTAAGCAGTGTTGAACCCTCTGATCGTCGATTGGCAGCTTGTGGTCTGT
GAAAGAAAGGGCCCATGGGACATGAGTCCAAAGACTCAAGATGGAACCTGAGGGAGAGAACCAA
GAAAGTGTTGGGAGAGGAGCCTGGAACAACGGACATTTTTTCCAGGGAGACACTGCTAAGCAAG
TTGCCCATCAGTCGTCTTGGGAAATGGATTGAGGGTTCCTGGCTTAGCAGCTGGTCCTTGCACA
GTGACCTTTTCCTCTGCTCAGTGCCGGGATGAGAGATGGAGTCATGAGTGTTGAAGAATAAGTG
CCTTCTATTTATTTTGAGTCTGTGTGTTCTCACTTTGGGCATGTAATTATGACTGGTGAATTCT
GACGACATGATAGATCTTAAGATGTAGTCACCAAACTCAACTGCTGCTTAGCATCCTCCGTAAC
TACTGATACAAGCAGGGAACACAGAGGTCACCTGCTTGGTTTGACAGGCTCTTGCTGTCTGACT
CAAATAATCTTTATTTTTCAGTCCTCAAGGCTCTTCGATAGCAGTTGTTCTGTATCAGCCTTAT
AGGTGTCAGGTATAGCACTCAACATCTCATCTCATTACAATAGCAACCCTCATCACCATAGCAA
CAGCTAACCTCTGTTATCCTCACTTCATAGCCAGGAAGCTGAGCGACTAAGTCACTTGCCCACA
GAGTATCAGCTCTCAGATTTCTGTTCTTCAGCCACTGTCCTTTCAGGATAGAATTTGTCGTTAA
GAAATTAATTTAAAAACTGATTATTGAGTAGCATTGTATATCAATCACAACATGCCTTGTGCAC
TGTGCTGGCCTCTGAGCATAAAGATGTACGCCGGAGTACCGGTCGGACATGTTTATGTGTGTTA
AATACTCAGAGAAATGTTCATTAACAAGGAGCTTGCATTTTAGAGACACTGGAAAGTAACTCCA
GTTCATTGTCTAGCATTACATTTACCTCATTTGCTATCCTTGCCATACAGTCTCTTGTTCTCCA
TGAAGTGTCATGAATCTTGTTGAATAGTTCTTTTATTTTTTAAATGTTTCTATTTAAATGATAT
TGACATCTGAGGCGATAGCTCAGTTGGTAAAACCCTTTCCTCACAAGTGTGAAACCCTGAGTCT
TATCCCTAGAACCCACATAAAAAACAGTTGCGTATGTTTGTGCATGCTTTTGATCCCAGCACTA
GGGAGGCAGAGGCAGGCAGATCCTGAGCTCTCATTGACCACCCAGCCTAGCCTACATGGTTAGC
TCCAGGCCTACAGGAGCTGGCAGAGCCTGAAAAACGATGCCTAGACACACACACACACACACAC
ACACACACACACACACACACACACCATGTACTCATAGACCTAAGTGCACCCTCCTACACATGCA
CACACATACAATTCAAACACAAATCAACAGGGAATTGTCTCAGAATGGTCCCCAAGACAAAGAA
GAAGAAAAACACCAAACCAGCTCTATTCCCTCAGCCTATCCTCTCTACTCCTTCCTAGAAGCAA
CTACTATTGTTTTTGTATATAAATTTACCCAACGACAGTTAATATGTAGAATATATATTAAAGT
GTCTGTCAATATATATTATCTCTTTCTTTCTTTCTTCCTTTCTTTCTTTCTTTCTTTCTTTCTT
TCTTTCTTTCTTTCTTTCTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTT
TCTTTCTTTCTTTTTTTCTGTCTATCTGTACCTAAATGGTTGCTCACTATGCATTTTCTGTGCT
CTTCGCCCTTTTTATTTAATGTATGGATATTTATGCTGCTTCCAGAATGGATCTAAAGCTCTTT
GTTTCTAGGTTTTCTCCCCCATCCTTCTAGGCATCTCTCACACTGTCTAGGCCAGACACCATGT
CTGCTGCCTGAATCTGTAGACACCATTTATAAAGCACGTACTCACCGAGTTTGTATTTGGCTTG
TTCTGTGTCTGATTAAAGGGAGACCATGAGTCCCCAGGGTACACTGAGTTACCCCAGTACCAAG
GGGGAGCCTTGTTTGTGTCTCCATGGCAGAAGCAGGCCTGGAGCCATTTTGGTTTCTTCCTTGA
CTTCTCTCAAACACAGACGCCTCACTTGCTCATTACAGGTTCTCCTTTGGGAATGTCAGCATTG
CTCCTTGACTGCTGGCTGCCCTGGAAGGAGCCCATTAGCTCTGTGTGAGCCCTTGACAGCTACT
GCCTCTCCTTACCACAGGGGCCTCTAAGATACTGTTACCTAGAGGTCTTGAGGATCTGTGTTCT
CTGGGGGGAGGAAAGGAGGAGGAACCCAGAACTTTCTTACAGTTTTCCTTGTTCTGTCACATGT
CAAGACTGAAGGAACAGGCTGGGCTACGTAGTGAGATCCTGTCTCAAAGGAAAGACGAGCATAG
CCGAACCCCCGGTGGAACCCCCTCTGTTACCTGTTCACACAAGCTTATTGATGAGTCTCATGTT
AATGTCTTGTTTGTATGAAGTTTAAGAAAATATCGGGTTGGGCAACACATTCTATTTATTCATT
TTATTTGAAATCTTAATGCCATCTCATGGTGTTGGATTGGTGTGGCACTTTATTCTTTTGTGTT
GTGTATAACCATAAATTTTATTTTGCATCAGATTGTCAATGTATTGCATTAATTTAATAAATAT
TTTTATTTATTAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_068693	(Get FASTA)	NCBI Sequence Viewer
	XP_030106880	(Get FASTA)	NCBI Sequence Viewer
	XP_030106881	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAG18509	(Get FASTA)	NCBI Sequence Viewer
	AAG31810	(Get FASTA)	NCBI Sequence Viewer
	AAH66841	(Get FASTA)	NCBI Sequence Viewer
	ADK70950	(Get FASTA)	NCBI Sequence Viewer
	BAE32562	(Get FASTA)	NCBI Sequence Viewer
	EDL41681	(Get FASTA)	NCBI Sequence Viewer
	Q9EP73	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_068693 ⟸ NM_021893
- Peptide Label:	precursor
- UniProtKB:	Q9EP73 (UniProtKB/Swiss-Prot), Q3U472 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRIFAGIIFTACCHLLRAFTITAPKDLYVVEYGSNVTMECRFPVERELDLLALVVYWEKEDEQV IQFVAGEEDLKPQHSNFRGRASLPKDQLLKGNAALQITDVKLQDAGVYCCIISYGGADYKRITL KVNAPYRKINQRISVDPATSEHELICQAEGYPEAEVIWTNSDHQPVSGKRSVTTSRTEGMLLNV TSSLRVNATANDVFYCTFWRSQPGQNHTAELIIPELPATHPPQNRTHWVLLGSILLFLIVVSTV LLFLRKQVRMLDVEKCGVEDTSSKNRNDTQFEET hide sequence

RefSeq Acc Id:	XP_030106880 ⟸ XM_030251020
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_030106881 ⟸ XM_030251021
- Peptide Label:	isoform X2

RefSeq Acc Id:

ENSMUSP00000016640 ⟸ ENSMUST00000016640

Protein Domains

Ig-like Ig-like C2-type Ig-like V-type

Promoters

RGD ID:

13679216

Promoter ID:

EPDNEW_M23758

Type:

initiation region

Name:

Cd274_1

Description:

Mus musculus CD274 antigen , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	19	29,367,460 - 29,367,520	EPDNEW

RGD ID:

6829735

Promoter ID:

MM_KWN:26794

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, BoneMarrow_2Hour, BoneMarrow_4Hour, Kidney, Liver, Lung, Spleen

Transcripts:

OTTMUST00000035406, OTTMUST00000082381, OTTMUST00000082382

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	19	29,441,446 - 29,442,047 (-)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1926446	AgrOrtholog
Ensembl Genes	ENSMUSG00000016496	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSMUSP00000016640	ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000016640	ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH	2.60.40.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	CD80_C2-set	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ig-like_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ig_sub	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ig_V-set	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:60533	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD	MGI:1926446	ENTREZGENE
NCBI Gene	60533	ENTREZGENE
Pfam	C2-set_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	V-set	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Cd274	PhenoGen
PROSITE	IG_LIKE	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	SM00409	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF48726	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	PD1L1_MOUSE	UniProtKB/Swiss-Prot
	Q3U472	ENTREZGENE, UniProtKB/TrEMBL
	Q9EP73	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-03-02	Cd274	CD274 antigen	A530045L16Rik	RIKEN cDNA A530045L16 gene	Data Merged	737654	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD