Havcr1 (hepatitis A virus cellular receptor 1) - Rat Genome Database
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Gene: Havcr1 (hepatitis A virus cellular receptor 1) Mus musculus
Analyze
Symbol: Havcr1
Name: hepatitis A virus cellular receptor 1
RGD ID: 1553522
MGI Page MGI
Description: Is expressed in brain; dorsal aorta; liver; lung; and reproductive system. Human ortholog(s) of this gene implicated in atopic dermatitis. Orthologous to human HAVCR1 (hepatitis A virus cellular receptor 1); INTERACTS WITH (S)-naringenin; (S)-nicotine; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AI503787; HAVcr-1; hepatitis A virus cellular receptor 1 homolog; kidney injury molecule 1; KIM-; KIM-1; t cell immunoglobulin and mucin domain-containing protein 1; t cell membrane protein 1; T-cell immunoglobulin and mucin domain containing 1; T-cell immunoglobulin mucin receptor 1; Tim; TIM-; TIM-1; Tim1; TIMD-1; Timd1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391146,630,644 - 46,670,405 (+)NCBIGRCm39mm39
GRCm39 Ensembl1146,625,907 - 46,670,405 (+)Ensembl
GRCm381146,739,822 - 46,779,578 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1146,735,080 - 46,779,578 (+)EnsemblGRCm38mm10GRCm38
MGSCv371146,553,725 - 46,593,080 (+)NCBIGRCm37mm9NCBIm37
MGSCv361146,594,600 - 46,622,036 (+)NCBImm8
Celera1151,321,716 - 51,355,068 (+)NCBICelera
Cytogenetic Map11B1.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(R)-lipoic acid  (ISO)
(S)-naringenin  (EXP)
(S)-nicotine  (EXP)
1-naphthyl isothiocyanate  (ISO)
11-deoxycorticosterone  (ISO)
2,4,6-trinitrobenzenesulfonic acid  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-diaminodiphenylmethane  (EXP,ISO)
6-chloro-2,3,4,9-tetrahydro-1H-carbazole-1-carboxamide  (EXP)
acrylamide  (ISO)
adefovir  (ISO)
aflatoxin B1  (ISO)
allyl alcohol  (ISO)
ammonium chloride  (ISO)
amphotericin B methyl ester  (EXP)
anthocyanin  (ISO)
anthracen-2-amine  (ISO)
aristolochic acid  (EXP)
bacitracin  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (ISO)
bleomycin A2  (EXP)
butanal  (ISO)
C60 fullerene  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
canagliflozin  (ISO)
cefaloridine  (ISO)
chloroform  (ISO)
cholesterol  (ISO)
chromium atom  (ISO)
chromium(6+)  (ISO)
cidofovir anhydrous  (ISO)
cisplatin  (EXP,ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
curcumin  (ISO)
cyanuric acid  (ISO)
cyclosporin A  (EXP,ISO)
deferasirox  (EXP,ISO)
desferrioxamine B  (ISO)
diclofenac  (ISO)
doxorubicin  (ISO)
ethanol  (EXP)
ethylene glycol  (ISO)
fenamic acid  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
formononetin  (ISO)
fructose  (ISO)
gefitinib  (EXP)
gentamycin  (ISO)
geraniol  (ISO)
glyphosate  (ISO)
gold atom  (ISO)
gold(0)  (ISO)
hesperidin  (ISO)
Hexachloro-1,3-butadiene  (ISO)
hydrogen chloride  (EXP)
hydrogen peroxide  (ISO)
icosanoid  (ISO)
iodixanol  (ISO)
iron(III) nitrilotriacetate  (ISO)
isocyanuric acid  (ISO)
isoniazide  (ISO)
ketoconazole  (ISO)
lipoic acid  (ISO)
lipopolysaccharide  (ISO)
lisinopril dihydrate  (ISO)
losartan  (ISO)
maleic acid  (ISO)
meglumine amidotrizoate  (ISO)
melamine  (ISO)
melatonin  (EXP)
menadione  (ISO)
mercury atom  (ISO)
mercury dichloride  (EXP,ISO)
mercury(0)  (ISO)
metformin  (ISO)
methylmercury chloride  (EXP,ISO)
N-nitrosodiethylamine  (ISO)
Natamycin  (EXP)
nicorandil  (ISO)
nicotine  (EXP)
nitric oxide  (ISO)
nystatin  (EXP)
ochratoxin A  (ISO)
Ondansetron  (EXP)
ozone  (EXP)
paracetamol  (EXP,ISO)
paraquat  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
phenol  (ISO)
phenylbutazone  (ISO)
pirinixic acid  (EXP)
potassium bromate  (ISO)
potassium dichromate  (ISO)
probenecid  (ISO)
resveratrol  (EXP)
rotenone  (EXP)
salubrinal  (EXP)
sirolimus  (ISO)
sodium arsenite  (EXP,ISO)
sodium cholate  (ISO)
sodium fluoride  (ISO)
streptozocin  (EXP,ISO)
tacrolimus hydrate  (ISO)
tenofovir disoproxil fumarate  (ISO)
testosterone  (ISO)
tetrachloroethene  (EXP)
tetrachloromethane  (EXP,ISO)
tetramethylpyrazine  (ISO)
thioacetamide  (ISO)
trichloroethene  (ISO)
urethane  (ISO)
vancomycin  (EXP,ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
1. Abassi Z, etal., J Urol. 2013 Apr;189(4):1559-66. doi: 10.1016/j.juro.2012.10.029. Epub 2012 Oct 22.
2. Abraham AP, etal., Nephrology (Carlton). 2012 May;17(4):322-9. doi: 10.1111/j.1440-1797.2012.01567.x.
3. Alter ML, etal., Clin Lab. 2012;58(7-8):659-71.
4. Aoyama M, etal., Biochem Biophys Res Commun. 2012 Mar 9;419(2):244-9. doi: 10.1016/j.bbrc.2012.02.001. Epub 2012 Feb 8.
5. Carlsson AC, etal., Eur J Heart Fail. 2013 Apr;15(4):441-6. doi: 10.1093/eurjhf/hfs187. Epub 2012 Dec 7.
6. Cuadros T, etal., Eur J Cancer. 2013 May;49(8):2034-47. doi: 10.1016/j.ejca.2012.12.020. Epub 2013 Jan 23.
7. Eirin A, etal., Nephrol Dial Transplant. 2012 Nov;27(11):4153-61. doi: 10.1093/ndt/gfs370. Epub 2012 Aug 23.
8. Fu WJ, etal., Diabetes Res Clin Pract. 2012 Jan;95(1):105-9. doi: 10.1016/j.diabres.2011.09.031. Epub 2011 Oct 20.
9. Gao LL, etal., Zhongguo Wei Zhong Bing Ji Jiu Yi Xue. 2012 Nov;24(11):647-50.
10. Gardiner L, etal., Am J Nephrol. 2012;35(2):152-63. doi: 10.1159/000335579. Epub 2012 Jan 20.
11. Graves PE, etal., J Allergy Clin Immunol. 2005 Sep;116(3):650-6.
12. Han WK, etal., Kidney Int. 2002 Jul;62(1):237-44.
13. Hong MY, etal., Mediators Inflamm. 2012;2012:381358. doi: 10.1155/2012/381358. Epub 2012 Dec 23.
14. Hosohata K, etal., J Appl Toxicol. 2013 Jan 11. doi: 10.1002/jat.2849.
15. Jin ZK, etal., Mol Immunol. 2013 Jul;54(3-4):457-64. doi: 10.1016/j.molimm.2013.01.013. Epub 2013 Feb 27.
16. Khademi M, etal., J Immunol. 2004 Jun 1;172(11):7169-76.
17. Khandrika L, etal., PLoS One. 2012;7(9):e44174. doi: 10.1371/journal.pone.0044174. Epub 2012 Sep 12.
18. Kramer AB, etal., Kidney Int. 2007 Mar;71(5):417-24. Epub 2007 Jan 10.
19. Kuehn EW, etal., Am J Physiol Renal Physiol. 2002 Dec;283(6):F1326-36. Epub 2002 Jul 24.
20. Kwon SH, etal., Clin Exp Nephrol. 2012 Nov 8.
21. Lekawanvijit S, etal., Am J Physiol Heart Circ Physiol. 2012 May 1;302(9):H1884-93. doi: 10.¿1152/¿ajpheart.¿00967.¿2011. Epub 2012 Feb 24.
22. Lieberthal JG, etal., J Rheumatol. 2013 May;40(5):674-683. Epub 2013 Apr 1.
23. MGD data from the GO Consortium
24. Oh SW, etal., BMC Nephrol. 2013 May 17;14(1):105.
25. OMIM Disease Annotation Pipeline
26. Peters HP, etal., Nephrol Dial Transplant. 2011 Nov;26(11):3581-8. doi: 10.1093/ndt/gfr135. Epub 2011 Apr 5.
27. Quiros Y, etal., Toxicol Sci. 2013 Apr;132(2):493-501. doi: 10.1093/toxsci/kft007. Epub 2013 Jan 18.
28. RGD automated import pipeline
29. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
30. RGD automated import pipeline for gene-chemical interactions
31. Rouse RL, etal., Toxicol Pathol. 2013;41(4):662-80. doi: 10.1177/0192623312464122. Epub 2012 Oct 19.
32. Sabbisetti VS, etal., Toxicol Sci. 2013 Jan;131(1):13-25. doi: 10.1093/toxsci/kfs268. Epub 2012 Sep 27.
33. Shanu A, etal., Antioxid Redox Signal. 2013 Mar 1;18(7):756-69. doi: 10.1089/ars.2012.4591. Epub 2012 Oct 16.
34. Soljancic A, etal., Am J Physiol Regul Integr Comp Physiol. 2013 Apr 3.
35. Sonar SS, etal., J Clin Invest. 2010 Aug 2;120(8):2767-81. doi: 10.1172/JCI39543. Epub 2010 Jul 12.
36. Sundaram N, etal., Am J Hematol. 2011 Jul;86(7):559-66. doi: 10.1002/ajh.22045. Epub 2011 May 31.
37. Toker A, etal., Urology. 2013 Jan;81(1):168-72. doi: 10.1016/j.urology.2012.09.004. Epub 2012 Nov 30.
38. Tomczak J, etal., Pediatr Nephrol. 2013 May 15.
39. Vaidya VS, etal., Kidney Int. 2011 Feb;79(4):464-70. doi: 10.1038/ki.2010.404. Epub 2010 Oct 27.
40. van Timmeren MM, etal., Am J Physiol Renal Physiol. 2006 Aug;291(2):F456-64. Epub 2006 Feb 7.
41. Wasilewska A, etal., Pediatr Nephrol. 2011 Apr;26(4):579-86. doi: 10.1007/s00467-011-1773-5. Epub 2011 Jan 31.
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:11725301   PMID:12466851   PMID:12477932   PMID:14534576   PMID:15489334   PMID:15793575  
PMID:15793576   PMID:16141072   PMID:16141073   PMID:16284246   PMID:17145500   PMID:17277130   PMID:17363299   PMID:17513880   PMID:17606630   PMID:17620455   PMID:17915221   PMID:17960135  
PMID:18079964   PMID:18082433   PMID:18083575   PMID:18172549   PMID:18234236   PMID:19155484   PMID:19528638   PMID:20091883   PMID:20181666   PMID:20220086   PMID:20518819   PMID:20562862  
PMID:20566714   PMID:20889552   PMID:21303660   PMID:21355054   PMID:21469101   PMID:21470319   PMID:21677750   PMID:21821911   PMID:21835770   PMID:21873635   PMID:21923683   PMID:22144095  
PMID:22205357   PMID:22773818   PMID:23137033   PMID:23672783   PMID:23979159   PMID:24316337   PMID:24453431   PMID:24551271   PMID:24623145   PMID:24703780   PMID:24829508   PMID:24904085  
PMID:25582854   PMID:25645598   PMID:25751064   PMID:25759266   PMID:26282792   PMID:26311113   PMID:26697979   PMID:26726878   PMID:26821944   PMID:27028054   PMID:27296697   PMID:27591740  
PMID:28874468   PMID:28949386   PMID:28951472   PMID:28978444   PMID:29074644   PMID:29402223   PMID:29595914   PMID:30938680   PMID:31242184  


Genomics

Comparative Map Data
Havcr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391146,630,644 - 46,670,405 (+)NCBIGRCm39mm39
GRCm39 Ensembl1146,625,907 - 46,670,405 (+)Ensembl
GRCm381146,739,822 - 46,779,578 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1146,735,080 - 46,779,578 (+)EnsemblGRCm38mm10GRCm38
MGSCv371146,553,725 - 46,593,080 (+)NCBIGRCm37mm9NCBIm37
MGSCv361146,594,600 - 46,622,036 (+)NCBImm8
Celera1151,321,716 - 51,355,068 (+)NCBICelera
Cytogenetic Map11B1.1NCBI
HAVCR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl5157,029,413 - 157,059,119 (-)EnsemblGRCh38hg38GRCh38
GRCh385157,028,383 - 157,069,633 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh375156,456,424 - 156,486,127 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365156,389,109 - 156,418,065 (-)NCBINCBI36hg18NCBI36
Build 345156,389,014 - 156,418,548NCBI
Celera5152,482,103 - 152,511,651 (-)NCBI
Cytogenetic Map5q33.3NCBI
HuRef5151,544,985 - 151,574,299 (-)NCBIHuRef
CHM1_15155,888,828 - 155,918,885 (-)NCBICHM1_1
Havcr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21031,118,667 - 31,151,730 (+)NCBI
Rnor_6.0 Ensembl1031,813,814 - 31,848,379 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01031,813,819 - 31,860,934 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01031,632,718 - 31,682,172 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41031,834,519 - 31,858,019 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11031,835,567 - 31,859,066 (+)NCBI
Celera1030,573,361 - 30,596,533 (+)NCBICelera
Cytogenetic Map10q21NCBI
Havcr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540811,047,679 - 11,070,492 (-)NCBIChiLan1.0ChiLan1.0
HAVCR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.15158,413,054 - 158,442,481 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5158,413,073 - 158,442,481 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v05152,429,337 - 152,459,800 (-)NCBIMhudiblu_PPA_v0panPan3
HAVCR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl453,046,970 - 53,128,952 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl453,012,234 - 53,033,393 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1453,012,223 - 53,066,611 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Havcr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365156,030,402 - 6,051,161 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HAVCR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11666,162,318 - 66,208,868 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21671,949,487 - 71,963,277 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HAVCR1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12359,422,769 - 59,454,183 (-)NCBI
ChlSab1.1 Ensembl2359,423,334 - 59,453,531 (-)Ensembl
Havcr1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473332,284,793 - 32,310,980 (+)NCBI

Position Markers
AI503787  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381146,779,230 - 46,779,403UniSTSGRCm38
MGSCv371146,592,732 - 46,592,905UniSTSGRCm37
Celera1151,354,720 - 51,354,893UniSTS
Cytogenetic Map11B1.1UniSTS
Whitehead/MRC_RH11628.32UniSTS
Timd1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381146,690,858 - 46,691,234UniSTSGRCm38
GRCm381146,749,895 - 46,750,266UniSTSGRCm38
MGSCv371146,504,360 - 46,504,736UniSTSGRCm37
MGSCv371146,563,397 - 46,563,768UniSTSGRCm37
Celera1151,331,384 - 51,331,751UniSTS
Celera1151,278,904 - 51,279,280UniSTS
Cytogenetic Map11B1.1UniSTS
cM Map11 UniSTS
cM MapUN UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11330000060800000Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11330000063000000Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11330000072800000Mouse
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11890000061500000Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111160000068600000Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111180000066100000Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1231863768609504Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111231863768609504Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111231863768609504Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1231863768609504Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1231863768609504Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111231863768609504Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1231863768609504Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1231863768609504Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1231863768609504Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111231863768609504Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111231863768609504Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111231863769794121Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111710617567187585Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111783196668609504Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111868778952687889Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111868778952687889Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111868778952687889Mouse
12801460Intim2_mintima modifier 2 (mouse)111868778952687889Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111939175053391888Mouse
14746971Manh70_mmandible shape 70 (mouse)112001506354015063Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2127257955272579Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112588179959881914Mouse
12910801Pwbwq14_mpost-weaning body weight QTL 14 (mouse)112724805750745267Mouse
12910804Pwbwq16_mpost-weaning body weight QTL 16 (mouse)112724805750745267Mouse
12910806Pwbwq15_mpost-weaning body weight QTL 15 (mouse)112724805750745267Mouse
12910817Pwgrq20_mpost-weaning growth rate QTL 20 (mouse)112724805750745267Mouse
12910818Ogrq5_moverall growth rate QTL 5 (mouse)112724805750745267Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112827504662275149Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112867832062678320Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112881775462817873Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113111738265117382Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113220975066209867Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113568778969794161Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113661246070618665Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113672273870723028Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113719011571190238Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113787775360511890Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113812528972125383Mouse
1300569Eae6b_msusceptibility to experimental allergic encephalomyelitis 6b (mouse)Not determined114005990154203622Mouse
10053675Eae44b_mexperimental allergic encephalomyelitis susceptibility 44b (mouse)Not determined114005990154203622Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114236579176365904Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114236579176365904Mouse
1300713Vmbic10_mventral midbrain iron content 10 (mouse)Not determined114288179954190238Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114473921176963931Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4141000Nidd3_mnon-insulin-dependent diabetes mellitus 3 (mouse)Not determined4515120179151308Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:833
Count of miRNA genes:260
Interacting mature miRNAs:296
Transcripts:ENSMUST00000047568, ENSMUST00000081819, ENSMUST00000109223, ENSMUST00000109224
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000047568   ⟹   ENSMUSP00000043827
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1146,751,168 - 46,779,578 (+)Ensembl
RefSeq Acc Id: ENSMUST00000081819   ⟹   ENSMUSP00000080503
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1146,740,061 - 46,779,578 (+)Ensembl
RefSeq Acc Id: ENSMUST00000109223   ⟹   ENSMUSP00000104846
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1146,750,511 - 46,779,576 (+)Ensembl
RefSeq Acc Id: ENSMUST00000109224   ⟹   ENSMUSP00000104847
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1146,735,080 - 46,756,245 (+)Ensembl
RefSeq Acc Id: NM_001166631   ⟹   NP_001160103
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391146,641,338 - 46,670,405 (+)NCBI
GRCm381146,750,511 - 46,779,578 (+)NCBI
MGSCv371146,553,725 - 46,593,080 (+)RGD
Celera1151,321,716 - 51,355,068 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001166632   ⟹   NP_001160104
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391146,631,050 - 46,670,405 (+)NCBI
GRCm381146,740,223 - 46,779,578 (+)NCBI
MGSCv371146,553,725 - 46,593,080 (+)RGD
Celera1151,321,716 - 51,355,068 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_134248   ⟹   NP_599009
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391146,641,995 - 46,670,405 (+)NCBI
GRCm381146,751,168 - 46,779,578 (+)NCBI
MGSCv371146,553,725 - 46,593,080 (+)RGD
Celera1151,321,716 - 51,355,068 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006532392   ⟹   XP_006532455
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391146,630,644 - 46,670,401 (+)NCBI
GRCm381146,739,822 - 46,779,574 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006532393   ⟹   XP_006532456
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391146,630,644 - 46,670,405 (+)NCBI
GRCm381146,739,822 - 46,779,578 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011248783   ⟹   XP_011247085
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391146,641,333 - 46,670,401 (+)NCBI
GRCm381146,750,506 - 46,779,574 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011248784   ⟹   XP_011247086
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391146,630,644 - 46,670,401 (+)NCBI
GRCm381146,739,822 - 46,779,574 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030245623   ⟹   XP_030101483
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391146,641,323 - 46,670,405 (+)NCBI
GRCm381146,750,498 - 46,779,578 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_599009   ⟸   NM_134248
- Peptide Label: isoform a precursor
- UniProtKB: Q5QNS5 (UniProtKB/Swiss-Prot),   A0A0A0MQ86 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001160104   ⟸   NM_001166632
- Peptide Label: isoform b precursor
- UniProtKB: Q5QNS5 (UniProtKB/Swiss-Prot),   Q3V033 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001160103   ⟸   NM_001166631
- Peptide Label: isoform b precursor
- UniProtKB: Q5QNS5 (UniProtKB/Swiss-Prot),   Q3V033 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006532456   ⟸   XM_006532393
- Peptide Label: isoform X2
- UniProtKB: A0A0A0MQ86 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006532455   ⟸   XM_006532392
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011247086   ⟸   XM_011248784
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_011247085   ⟸   XM_011248783
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_030101483   ⟸   XM_030245623
- Peptide Label: isoform X2
RefSeq Acc Id: ENSMUSP00000043827   ⟸   ENSMUST00000047568
RefSeq Acc Id: ENSMUSP00000080503   ⟸   ENSMUST00000081819
RefSeq Acc Id: ENSMUSP00000104846   ⟸   ENSMUST00000109223
RefSeq Acc Id: ENSMUSP00000104847   ⟸   ENSMUST00000109224
Protein Domains
Ig-like   Ig-like V-type

Promoters
RGD ID:8674416
Promoter ID:EPDNEW_M15239
Type:multiple initiation site
Name:Havcr1_1
Description:Mus musculus hepatitis A virus cellular receptor 1 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381146,740,220 - 46,740,280EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2159680 AgrOrtholog
Ensembl Genes ENSMUSG00000040405 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000043827 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000080503 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000104846 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000104847 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000047568 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000081819 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000109223 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000109224 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_V-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:171283 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2159680 ENTREZGENE
NCBI Gene 171283 ENTREZGENE
Pfam V-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB HAVCR1 RGD
PhenoGen Havcr1 PhenoGen
PROSITE IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00409 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0A0MQ86 ENTREZGENE, UniProtKB/TrEMBL
  E9QPA7_MOUSE UniProtKB/TrEMBL
  HAVR1_MOUSE UniProtKB/Swiss-Prot
  Q3V033 ENTREZGENE, UniProtKB/TrEMBL
  Q5QNS5 ENTREZGENE
UniProt Secondary Q7TPU2 UniProtKB/Swiss-Prot
  Q8VIM1 UniProtKB/Swiss-Prot
  Q8VIM2 UniProtKB/Swiss-Prot