Cyp20a1 (cytochrome P450, family 20, subfamily a, polypeptide 1) - Rat Genome Database

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Gene: Cyp20a1 (cytochrome P450, family 20, subfamily a, polypeptide 1) Mus musculus
Analyze
Symbol: Cyp20a1
Name: cytochrome P450, family 20, subfamily a, polypeptide 1
RGD ID: 1553472
MGI Page MGI
Description: Predicted to enable several functions, including heme binding activity; iron ion binding activity; and monooxygenase activity. Predicted to be located in membrane. Is expressed in several structures, including brain; craniocervical region bone; genitourinary system; liver; and spleen. Orthologous to human CYP20A1 (cytochrome P450 family 20 subfamily A member 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: A930011N14Rik; Cypm; cytochrome P450 20A1; cytochrome P450 monooxygenase; cytochrome P450, 20a1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39160,382,459 - 60,427,219 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl160,382,482 - 60,427,219 (+)EnsemblGRCm39 Ensembl
GRCm38160,343,300 - 60,388,060 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl160,343,323 - 60,388,060 (+)EnsemblGRCm38mm10GRCm38
MGSCv37160,400,216 - 60,444,231 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36160,287,918 - 60,331,933 (+)NCBIMGSCv36mm8
Celera160,859,068 - 60,903,156 (+)NCBICelera
Cytogenetic Map1C2NCBI
cM Map130.47NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:12745259   PMID:14610273   PMID:16141072   PMID:16141073   PMID:18799693   PMID:21267068   PMID:21677750  
PMID:27113764   PMID:30550785   PMID:30973865   PMID:32325033   PMID:38355793  


Genomics

Comparative Map Data
Cyp20a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39160,382,459 - 60,427,219 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl160,382,482 - 60,427,219 (+)EnsemblGRCm39 Ensembl
GRCm38160,343,300 - 60,388,060 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl160,343,323 - 60,388,060 (+)EnsemblGRCm38mm10GRCm38
MGSCv37160,400,216 - 60,444,231 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36160,287,918 - 60,331,933 (+)NCBIMGSCv36mm8
Celera160,859,068 - 60,903,156 (+)NCBICelera
Cytogenetic Map1C2NCBI
cM Map130.47NCBI
CYP20A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382203,239,018 - 203,306,026 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2203,238,977 - 203,306,026 (+)EnsemblGRCh38hg38GRCh38
GRCh372204,103,741 - 204,170,749 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362203,811,409 - 203,878,808 (+)NCBINCBI36Build 36hg18NCBI36
Celera2197,856,120 - 197,924,954 (+)NCBICelera
Cytogenetic Map2q33.2NCBI
HuRef2195,951,328 - 196,018,059 (+)NCBIHuRef
CHM1_12204,109,760 - 204,177,160 (+)NCBICHM1_1
T2T-CHM13v2.02203,720,529 - 203,787,984 (+)NCBIT2T-CHM13v2.0
Cyp20a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8969,249,841 - 69,299,146 (+)NCBIGRCr8
mRatBN7.2961,755,804 - 61,805,123 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl961,755,790 - 61,805,123 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx970,257,758 - 70,307,021 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0975,373,325 - 75,422,592 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0973,692,027 - 73,741,293 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0967,130,222 - 67,179,693 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl967,130,259 - 67,179,692 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0966,943,519 - 66,993,518 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4958,907,503 - 58,973,287 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1959,054,484 - 59,120,268 (+)NCBI
Celera959,185,997 - 59,234,590 (+)NCBICelera
Cytogenetic Map9q32NCBI
LOC102029370
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545711,584,584 - 11,647,153 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545711,585,851 - 11,646,764 (-)NCBIChiLan1.0ChiLan1.0
CYP20A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213105,844,450 - 105,911,839 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B105,858,543 - 105,926,607 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B90,473,024 - 90,539,177 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B208,615,273 - 208,672,731 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B208,615,273 - 208,672,731 (+)Ensemblpanpan1.1panPan2
CYP20A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13712,085,566 - 12,141,061 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3712,086,749 - 12,140,228 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3712,967,700 - 13,025,439 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03712,021,984 - 12,079,777 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3712,022,000 - 12,079,780 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13711,977,955 - 12,035,702 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03711,949,094 - 12,006,838 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03711,943,390 - 12,001,145 (+)NCBIUU_Cfam_GSD_1.0
LOC101964504
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303160,264,790 - 160,325,537 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367262,235,361 - 2,298,775 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367262,234,611 - 2,295,527 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CYP20A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11088,986,394 - 89,051,344 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1088,987,016 - 89,042,537 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040110,330,792 - 110,397,954 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101700295
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476513,105,816 - 13,159,574 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476513,108,937 - 13,159,580 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cyp20a1
2799 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:861
Count of miRNA genes:452
Interacting mature miRNAs:516
Transcripts:ENSMUST00000060608, ENSMUST00000114202, ENSMUST00000148443
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
12910788Pwgrq9_mpost-weaning growth rate QTL 9 (mouse)14086800867270256Mouse
18182931Metl1_mmetabolite locus 1, pyridoxate (mouse)14127539975275399Mouse
12910786Pwgrq10_mpost-weaning growth rate QTL 10 (mouse)14086800867270256Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
1357824Estoq4_membryo survival total QTL 4 (mouse)Not determined13476013873976915Mouse
14746998Mancz1_mmandible centroid size 1 (mouse)15794135191941351Mouse
1300746Skl1_mskeletal size (tail length) 1 (mouse)Not determined15799197791992080Mouse
4141724Idd5.1_minsulin dependent diabetes susceptibility 5.1 (mouse)Not determined5772827662946882Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
10043965Obq24_mobesity QTL 24 (mouse)Not determined15089021684890216Mouse
1301430Cdcs2_mcytokine deficiency colitis susceptibility 2 (mouse)Not determined14889234582892485Mouse
1558717Ses1a_msalmonella enteritidis susceptibility 1a (mouse)Not determined15672692290727077Mouse
1357759W3q12_mweight 3 weeks QTL 12 (mouse)Not determined13476013873976915Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1301667Lxw5_mlupus BXSB x NZW 5 (mouse)Not determined15854919192549443Mouse
1558822Vas1_mautoimmune vasitis resistance 1 (mouse)Not determined14888900682889210Mouse
1301670Ssta1_msusceptibility to Salmonella typhimurium antigens 1 (mouse)Not determined14594675579946882Mouse
1357475w3q13_mweight 3 weeks QTL 13 (mouse)Not determined12310959173976915Mouse
1357741Nidd5k_mNidd5 on KK-A<y> (mouse)Not determined15597494889975057Mouse
1301162Skull1_mskull morphology 1 (mouse)Not determined15799197791992080Mouse
4142467Wbcq1_mwhite blood cell quantitative locus 1 (mouse)Not determined15626621490266360Mouse
1301166Thypr2_mthymocyte proliferative response 2 (mouse)Not determined14127312475273271Mouse
1301933Insq6_minsulin QTL 6 (mouse)Not determined15672692290727077Mouse
1357524W6q14_mweight 6 weeks QTL 14 (mouse)Not determined13476013873976915Mouse
1301714Vertcling_mvertical clinging (mouse)Not determined14293803176938167Mouse
4141305Tgq9_mtriglyceride QTL 9 (mouse)Not determined5142160585421605Mouse
1357651Lgq5_mlate growth QTL 5 (mouse)Not determined13476013873976915Mouse
11100001Col4a1m1_mcollagen, type IV, alpha 1 modifier 1 (mouse)12555019162946882Mouse
1301211Bbaa11_mB.burgdorferi-associated arthritis 11 (mouse)Not determined14888900682889210Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
1558855Eae30_mexperimental allergic encephalomyelitis susceptibility 30 (mouse)Not determined14541777372975057Mouse
1301954Lrnx11_mlearning-contextual 11 (mouse)Not determined13913280874516365Mouse
1357505Vtbt1_mvertebral trabecular bone trait 1 (mouse)Not determined15626621490266360Mouse
1357506W10q6_mweight 10 weeks QTL 6 (mouse)Not determined13476013873976915Mouse
4141032Wbcc1_mwhite blood cell count 1 (mouse)Not determined4225966776259667Mouse
1301444Alcw5_malcohol withdrawal 5 (mouse)Not determined15854919192549443Mouse
39128207Lwq16_mliver weight QTL 16 (mouse)13476013873976915Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
4142307Shali1_msurvival time to hyperoxic acute lung injury 1 (mouse)Not determined5196402570406589Mouse
14747009Manh49_mmandible shape 49 (mouse)15794135191941351Mouse
1301616Yaa2_mY-linked autoimmune acceleration 2 (mouse)Not determined14685469080854839Mouse
12879917Shm3_msperm head morphology 3 (mouse)14418690462946882Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1558905Gct7_mgranulosa cell tumorigenesis 7 (mouse)Not determined14734989481350013Mouse
12910780Pwgrq11_mpost-weaning growth rate QTL 11 (mouse)14086800867270256Mouse
1301225Sle7_msystematic lupus erythematosus susceptibility 7 (mouse)Not determined14685469080854839Mouse
1357679Egrm1_mearly growth rate, maternal effect 1 (mouse)Not determined15799197791992080Mouse

Markers in Region
Cyp20a1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1C2UniSTS
cM Map1 UniSTS
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000060608   ⟹   ENSMUSP00000050823
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl160,382,482 - 60,427,219 (+)Ensembl
GRCm38.p6 Ensembl160,343,323 - 60,388,060 (+)Ensembl
Ensembl Acc Id: ENSMUST00000114202
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl160,382,482 - 60,411,866 (+)Ensembl
GRCm38.p6 Ensembl160,343,323 - 60,372,707 (+)Ensembl
Ensembl Acc Id: ENSMUST00000148443   ⟹   ENSMUSP00000137471
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl160,382,482 - 60,427,219 (+)Ensembl
GRCm38.p6 Ensembl160,343,323 - 60,388,060 (+)Ensembl
RefSeq Acc Id: NM_001313721   ⟹   NP_001300650
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39160,382,459 - 60,427,219 (+)NCBI
GRCm38160,343,300 - 60,388,060 (+)NCBI
Sequence:
RefSeq Acc Id: NM_030013   ⟹   NP_084289
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39160,382,459 - 60,427,219 (+)NCBI
GRCm38160,343,300 - 60,388,060 (+)NCBI
MGSCv37160,400,216 - 60,444,231 (+)RGD
Celera160,859,068 - 60,903,156 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006496328   ⟹   XP_006496391
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39160,382,485 - 60,427,217 (+)NCBI
GRCm38160,343,326 - 60,388,058 (+)NCBI
Sequence:
RefSeq Acc Id: NP_084289   ⟸   NM_030013
- Peptide Label: isoform 1
- UniProtKB: Q8BKE6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006496391   ⟸   XM_006496328
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001300650   ⟸   NM_001313721
- Peptide Label: isoform 2
- UniProtKB: Q80Y48 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000137471   ⟸   ENSMUST00000148443
Ensembl Acc Id: ENSMUSP00000050823   ⟸   ENSMUST00000060608

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BKE6-F1-model_v2 AlphaFold Q8BKE6 1-462 view protein structure

Promoters
RGD ID:6873874
Promoter ID:EPDNEW_M388
Type:initiation region
Name:Cyp20a1_1
Description:Mus musculus cytochrome P450, family 20, subfamily a, polypeptide1 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38160,343,320 - 60,343,380EPDNEW
RGD ID:6817570
Promoter ID:MM_KWN:901
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000114202,   OTTMUST00000051028,   OTTMUST00000051030
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36160,399,956 - 60,400,572 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1925201 AgrOrtholog
Ensembl Genes ENSMUSG00000049439 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000060608 ENTREZGENE
  ENSMUST00000060608.13 UniProtKB/Swiss-Prot
  ENSMUST00000148443.3 UniProtKB/TrEMBL
Gene3D-CATH 1.10.630.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CYP450_20A1-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyt_P450 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyt_P450_E_grp-I UniProtKB/Swiss-Prot
  Cyt_P450_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:77951 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1925201 ENTREZGENE
NCBI Gene 77951 ENTREZGENE
PANTHER CYTOCHROME P450 20A1 UniProtKB/Swiss-Prot
  CYTOCHROME P450 20A1 UniProtKB/Swiss-Prot
  CYTOCHROME P450 20A1 UniProtKB/TrEMBL
  CYTOCHROME P450 20A1 UniProtKB/TrEMBL
Pfam p450 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cyp20a1 PhenoGen
PRINTS EP450I UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48264 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CP20A_MOUSE UniProtKB/Swiss-Prot
  J3QPT8_MOUSE UniProtKB/TrEMBL
  Q80Y48 ENTREZGENE, UniProtKB/TrEMBL
  Q8BKE6 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-10-16 Cyp20a1  cytochrome P450, family 20, subfamily a, polypeptide 1    cytochrome P450, family 20, subfamily A, polypeptide 1  Symbol and/or name change 5135510 APPROVED