Rnasel (ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)) - Rat Genome Database

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Gene: Rnasel (ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)) Mus musculus
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Symbol: Rnasel
Name: ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)
RGD ID: 1553469
MGI Page MGI
Description: Enables ribonucleoprotein complex binding activity. Acts upstream of or within fat cell differentiation; positive regulation of glucose import; and regulation of mRNA stability. Predicted to be located in nuclear matrix. Is expressed in cerebellum; embryo; hippocampus; retina inner nuclear layer; and retina outer nuclear layer. Human ortholog(s) of this gene implicated in Lynch syndrome and prostate cancer. Orthologous to human RNASEL (ribonuclease L).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2-5A-dependent ribonuclease; 2-5A-dependent RNAase; 2-5A-dependent RNase; E230029I04Rik; ribonuclease 4; RNase L
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391153,625,089 - 153,644,441 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1153,625,172 - 153,639,967 (+)EnsemblGRCm39 Ensembl
GRCm381153,749,344 - 153,768,690 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1153,749,426 - 153,764,221 (+)EnsemblGRCm38mm10GRCm38
MGSCv371155,596,556 - 155,611,351 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361155,515,149 - 155,524,559 (+)NCBIMGSCv36mm8
Celera1156,181,252 - 156,196,205 (+)NCBICelera
Cytogenetic Map1G3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Dichotomy between survival and lytic gene expression in RNase L- and PKR-deficient mice transduced with an adenoviral vector expressing murine IFN-beta following ocular HSV-1 infection. Al-Khatib K, etal., Exp Eye Res. 2005 Feb;80(2):167-73. doi: 10.1016/j.exer.2004.08.026.
2. RNASEL Arg462Gln variant is implicated in up to 13% of prostate cancer cases. Casey G, etal., Nat Genet. 2002 Dec;32(4):581-3. Epub 2002 Nov 4.
3. Mutations in ribonuclease L gene do not occur at a greater frequency in patients with familial prostate cancer compared with patients with sporadic prostate cancer. Downing SR, etal., Clin Prostate Cancer. 2003 Dec;2(3):177-80.
4. Herpes simplex virus type 2-mediated disease is reduced in mice lacking RNase L. Duerst RJ and Morrison LA, Virology. 2007 Apr 10;360(2):322-8. doi: 10.1016/j.virol.2006.10.042. Epub 2006 Dec 6.
5. Lineage A Betacoronavirus NS2 Proteins and the Homologous Torovirus Berne pp1a Carboxy-Terminal Domain Are Phosphodiesterases That Antagonize Activation of RNase L. Goldstein SA, etal., J Virol. 2017 Feb 14;91(5). pii: JVI.02201-16. doi: 10.1128/JVI.02201-16. Print 2017 Mar 1.
6. Interferon-regulated pathways that control hepatitis B virus replication in transgenic mice. Guidotti LG, etal., J Virol. 2002 Mar;76(6):2617-21. doi: 10.1128/jvi.76.6.2617-2621.2002.
7. Inhibition of RNase L and RNA-dependent protein kinase (PKR) by sunitinib impairs antiviral innate immunity. Jha BK, etal., J Biol Chem. 2011 Jul 29;286(30):26319-26. doi: 10.1074/jbc.M111.253443. Epub 2011 Jun 2.
8. Arg462Gln sequence variation in the prostate-cancer-susceptibility gene RNASEL and age of onset of hereditary non-polyposis colorectal cancer: a case-control study. Kruger S, etal., Lancet Oncol. 2005 Aug;6(8):566-72.
9. Ribonuclease L is not critical for innate restriction and adaptive immunity against Friend retrovirus infection. Li SX, etal., Virology. 2013 Aug 15;443(1):134-42. doi: 10.1016/j.virol.2013.05.009. Epub 2013 May 29.
10. An essential role for the antiviral endoribonuclease, RNase-L, in antibacterial immunity. Li XL, etal., Proc Natl Acad Sci U S A. 2008 Dec 30;105(52):20816-21. doi: 10.1073/pnas.0807265105. Epub 2008 Dec 15.
11. RNase-L deficiency exacerbates experimental colitis and colitis-associated cancer. Long TM, etal., Inflamm Bowel Dis. 2013 May;19(6):1295-305. doi: 10.1097/MIB.0b013e318281f2fd.
12. MGDs mouse GO annotations MGD data from the GO Consortium
13. MGD IEA MGD IEA
14. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
15. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
16. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
17. Mouse MP Annotation Import Pipeline RGD automated import pipeline
18. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
19. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
20. Roles of vaccinia virus genes E3L and K3L and host genes PKR and RNase L during intratracheal infection of C57BL/6 mice. Rice AD, etal., J Virol. 2011 Jan;85(1):550-67. doi: 10.1128/JVI.00254-10. Epub 2010 Oct 13.
21. PKR and RNase L contribute to protection against lethal West Nile Virus infection by controlling early viral spread in the periphery and replication in neurons. Samuel MA, etal., J Virol. 2006 Jul;80(14):7009-19. doi: 10.1128/JVI.00489-06.
22. Lack of association between RNASEL Arg462Gln variant and the risk of breast cancer. Sevinc A, etal., Anticancer Res. 2004 Jul-Aug;24(4):2547-9.
23. Middle East Respiratory Syndrome Coronavirus NS4b Protein Inhibits Host RNase L Activation. Thornbrough JM, etal., mBio. 2016 Mar 29;7(2):e00258. doi: 10.1128/mBio.00258-16.
24. Blockade of interferon induction and action by the E3L double-stranded RNA binding proteins of vaccinia virus. Xiang Y, etal., J Virol. 2002 May;76(10):5251-9. doi: 10.1128/jvi.76.10.5251-5259.2002.
25. Role of ribonuclease L in viral pathogen-associated molecular pattern/influenza virus and cigarette smoke-induced inflammation and remodeling. Zhou Y, etal., J Immunol. 2013 Sep 1;191(5):2637-46. doi: 10.4049/jimmunol.1300082. Epub 2013 Aug 2.
Additional References at PubMed
PMID:7680958   PMID:8055909   PMID:9351818   PMID:10349636   PMID:10366581   PMID:10801979   PMID:11042159   PMID:11063255   PMID:11076861   PMID:11133856   PMID:11217851   PMID:11585831  
PMID:11952148   PMID:12477932   PMID:12566417   PMID:14570908   PMID:15226823   PMID:15522195   PMID:15661870   PMID:15782199   PMID:15994831   PMID:16002711   PMID:16141072   PMID:16141073  
PMID:16501108   PMID:16627618   PMID:16895559   PMID:17091337   PMID:17130839   PMID:17653195   PMID:19411840   PMID:19798426   PMID:19851509   PMID:21267068   PMID:21451052   PMID:21813458  
PMID:21873635   PMID:22441668   PMID:22704621   PMID:22718976   PMID:22875977   PMID:23109342   PMID:23698313   PMID:23825954   PMID:23878220   PMID:24316575   PMID:24324683   PMID:24780566  
PMID:25287058   PMID:25816776   PMID:26517238   PMID:26739051   PMID:27831565   PMID:28158275   PMID:30765463   PMID:32385693   PMID:34343497  


Genomics

Comparative Map Data
Rnasel
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391153,625,089 - 153,644,441 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1153,625,172 - 153,639,967 (+)EnsemblGRCm39 Ensembl
GRCm381153,749,344 - 153,768,690 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1153,749,426 - 153,764,221 (+)EnsemblGRCm38mm10GRCm38
MGSCv371155,596,556 - 155,611,351 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361155,515,149 - 155,524,559 (+)NCBIMGSCv36mm8
Celera1156,181,252 - 156,196,205 (+)NCBICelera
Cytogenetic Map1G3NCBI
RNASEL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381182,573,634 - 182,589,256 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1182,573,634 - 182,589,256 (-)EnsemblGRCh38hg38GRCh38
GRCh371182,542,769 - 182,558,391 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361180,809,395 - 180,822,731 (-)NCBINCBI36Build 36hg18NCBI36
Build 341179,274,428 - 179,287,765NCBI
Celera1155,654,005 - 155,667,341 (-)NCBICelera
Cytogenetic Map1q25.3NCBI
HuRef1153,779,235 - 153,794,860 (-)NCBIHuRef
CHM1_11183,966,207 - 183,981,832 (-)NCBICHM1_1
T2T-CHM13v2.01181,933,110 - 181,948,734 (-)NCBIT2T-CHM13v2.0
Rnasel
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21365,894,990 - 65,910,354 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1365,901,459 - 65,908,704 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1368,502,520 - 68,509,768 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01369,792,702 - 69,799,948 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01367,049,541 - 67,056,829 (+)NCBIRnor_WKY
Rnor_6.01371,188,712 - 71,202,636 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1371,192,142 - 71,202,625 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01376,153,998 - 76,167,666 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41368,822,013 - 68,829,264 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11368,836,092 - 68,843,336 (+)NCBI
Celera1365,801,918 - 65,809,169 (+)NCBICelera
Cytogenetic Map13q21NCBI
Rnasel
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540621,411,980 - 21,425,052 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540621,413,950 - 21,424,860 (-)NCBIChiLan1.0ChiLan1.0
RNASEL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11161,744,169 - 161,759,741 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1161,741,645 - 161,760,045 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01158,092,346 - 158,108,026 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
RNASEL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1715,978,055 - 16,001,604 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl715,856,151 - 16,001,569 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha715,566,511 - 15,588,072 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0715,706,990 - 15,731,063 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl715,584,822 - 15,731,112 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1715,621,143 - 15,642,651 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0715,729,189 - 15,750,983 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0715,858,335 - 15,880,030 (-)NCBIUU_Cfam_GSD_1.0
Rnasel
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934489,316,525 - 89,330,595 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364817,165,353 - 7,177,538 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049364817,165,400 - 7,177,342 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNASEL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9123,893,294 - 123,910,398 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19123,895,045 - 123,910,386 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29136,210,085 - 136,224,410 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RNASEL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12546,779,221 - 46,795,854 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2546,779,700 - 46,795,842 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605547,997,591 - 48,013,734 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnasel
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462481411,268,698 - 11,305,221 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462481411,268,725 - 11,319,023 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Mir29b-1mmu-miR-29b-3pOncomiRDBexternal_infoNANA23113544
Mir29cmmu-miR-29c-3pOncomiRDBexternal_infoNANA23113544
Mir29ammu-miR-29a-3pOncomiRDBexternal_infoNANA23113544
Mir29b-2mmu-miR-29b-3pOncomiRDBexternal_infoNANA23113544

Predicted Target Of
Summary Value
Count of predictions:1285
Count of miRNA genes:464
Interacting mature miRNAs:546
Transcripts:ENSMUST00000086209, ENSMUST00000182016, ENSMUST00000182131, ENSMUST00000182538, ENSMUST00000182722, ENSMUST00000183138, ENSMUST00000183241
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
27095901Scvln8_msacral vertebrae length 2, 10 week (mouse)194127725172027567Mouse
27226779Tibl1_mtibia length 1, 5 week (mouse)195527725162027569Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1103933405191225397Mouse
1301149Lrnx12_mlearning-contextual 12 (mouse)Not determined1112008822168186402Mouse
1302098Eila1_methanol induced locomotor activity 1 (mouse)Not determined1112008822175468938Mouse
27095915Scvln13_msacral vertebrae length 2, 16 week (mouse)1117527730179827565Mouse
27226740Metcl13_mmetatarsal-calcaneal length 13, 16 week (mouse)1121727729153775746Mouse
27226743Metcl7_mmetatarsal-calcaneal length 7, 10 week (mouse)1121727729153875746Mouse
27226767Tibl10_mtibia length 10, 10 week (mouse)1121727729164827569Mouse
27226799Feml5_mfemur length 5, 5 week (mouse)1122027729164827569Mouse
12880408V125Dq3_mvitamin D active form serum level QTL 3 (mouse)1122927738156927738Mouse
27095935Ulnl5_mulna length 5, 10 week (mouse)1128727737181327565Mouse
1301608Emo3_memotionality 3 (mouse)Not determined1129130858163130993Mouse
1302128Ity3_mimmunity to S. typhimurium 3 (mouse)Not determined11131156308165139464Mouse
14746980Manh50_mmandible shape 50 (mouse)1134131564168131564Mouse
1301458Skts8_mskin tumor susceptibility 8 (mouse)Not determined1135794822169795012Mouse
1301408Lore8_mloss of righting induced by ethanol 8 (mouse)Not determined1135877901169878015Mouse
1357434Obsty1_mobesity 1 (mouse)Not determined1136209950170210094Mouse
4141160Cq1_mcholesterol QTL 1 (mouse)Not determined1139452188173452308Mouse
1301523Ccrs1_mcorpus callosum hemisphere surface size 1 (mouse)Not determined1139602037173602216Mouse
1300696Bpq2_mblood pressure QTL 2 (mouse)Not determined1139602037173602216Mouse
1357602Vtbt2_mvertebral trabecular bone trait 2 (mouse)Not determined1139602037173602216Mouse
1301710Bmd5_mbone mineral density 5 (mouse)Not determined1139602037173602216Mouse
11049576Lmr8a_mleishmaniasis resistance 8a (mouse)1139602037173602216Mouse
1301894Skull2_mskull morphology 2 (mouse)Not determined1139602037173602216Mouse
1302193Cpfd1_mcerebellum pattern fissures (mouse)Not determined1139602037173602216Mouse
1300740Tne1_mtotal number errors (mouse)Not determined1139602037173602216Mouse
4142014Wbcq5_mwhite blood cell quantitative locus 5 (mouse)Not determined1141095010175095156Mouse
1301467Pcir1_mperiosteal circumference 1 (mouse)Not determined1141233173175233272Mouse
1301191Stia1_mserum transfer induced arthritis 1 (mouse)Not determined1141233173175233272Mouse
11533913Rd6m1_mretinal degeneration 6 modifier 1 (mouse)1141233173175233272Mouse
4141233Femwf12_mfemur work to failure 12 (mouse)Not determined141233173175233272Mouse
1301151Hdlq14_mHDL QTL 14 (mouse)Not determined1142489543176489734Mouse
1558720Bpq8_mblood pressure QTL 8 (mouse)Not determined1143284665177284803Mouse
11537365Cnes4_mC. neoformans susceptibility locus 4 (mouse)1144449142178449142Mouse
1300571Opfa_mopen field activity (mouse)Not determined1144531347178531592Mouse
12790996Aath2_maortic arch atherosclerosis 2 (mouse)1145077630179077630Mouse
1300934Cfbw1_mcystic fibrosis body weight 1 (mouse)Not determined1145145207179145325Mouse
1301818Ap1q_malcohol preference 1 QTL (mouse)Not determined1146908199167586222Mouse
1301135Pas8_mpulmonary adenoma susceptibility 8 (mouse)Not determined1147125258158233272Mouse
1357567Nidd3k_mNidd3 on KK-A<y> (mouse)Not determined7147125258169038913Mouse
12910522Scgq2_mspontaneous crescentic glomerulonephritis QTL 2 (mouse)1147125258171632257Mouse
1301385Radpf2_mradiation pulmonary fibrosis 2 (mouse)Not determined1147125258182873798Mouse
4141149Hbnr4_mHeligmosomoides bakeri nematode resistance 4 (mouse)Not determined147125258188983224Mouse
12790984Pcho7_mplasma cholesterol 7 (mouse)1147219390181219390Mouse
12791001Aath6_maortic arch atherosclerosis 6 (mouse)1147219390181219390Mouse
1300777Chol10_mcholesterol 10 (mouse)Not determined9147875502181875616Mouse
10043899Hdlq99_mHDL QTL 99 (mouse)Not determined1147875502181875616Mouse
13452392Ity3a_mimmunity to S. typhimurium 3a (mouse)1149028612154228616Mouse
1357618Splq5_mspleen weight QTL 5 (mouse)Not determined1150193673188359312Mouse
1357493Lgaq3_mlate growth adjusted QTL 3 (mouse)Not determined1150193673188359312Mouse
1357485Lgq4_mlate growth QTL 4 (mouse)Not determined1150193673188359312Mouse
12903996Cfq5_mconditioned fear QTL 5 (mouse)1150606337159307464Mouse
4141346Skmw12_mskeletal muscle weight 12 (mouse)Not determined150756737184756922Mouse
1300969Sluc5_msusceptibility to lung cancer 5 (mouse)Not determined1151186243185186402Mouse
4142159Nba2_mNew Zealand Black autoimmunity 2 (mouse)Not determined151835111185835280Mouse
1357889Lprq3_mlipoprotein QTL 3 (mouse)Not determined1152038741186038913Mouse
1301301Sle1_msystemic lupus erythmatosus susceptibility 1 (mouse)Not determined1152038741186038913Mouse
1301025Lbw7_mlupus NZB x NZW 7 (mouse)Not determined1152038741186038913Mouse
1301614Cgnz1_mchronic glomerulonephritis in NZM 1 (mouse)Not determined1152038741186038913Mouse
4141554Cfmq1_mcystic fibrosis modifier QTL 1 (mouse)Not determined1152038741186038913Mouse
13464138Hdlq107_mHDL QTL 107 (mouse)1152132744186132744Mouse
11251722Ewc1_methanol withdrawal and consumption 1 (mouse)1152132744186132744Mouse
10054270Nba10_mNew Zealand Black autoimmunity 10 (mouse)Not determined1152794822186438620Mouse
4142149Ctex_mCtla4 expression QTL (mouse)Not determined1153557406175468938Mouse

Markers in Region
D5Mit392.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7A3UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map1G3UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map6F1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map17DUniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic MapXF5UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic MapXF3UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map15A1UniSTS
Cytogenetic Map1A2UniSTS
Cytogenetic Map13A3.1UniSTS
Cytogenetic Map11B4UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map2E1UniSTS
cM Map528.0UniSTS
Whitehead Genetic518.6UniSTS
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_011882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011247993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC154140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF281045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK054205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC138013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ666279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JX443419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L10382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000086209   ⟹   ENSMUSP00000083385
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1153,625,172 - 153,638,147 (+)Ensembl
GRCm38.p6 Ensembl1153,749,426 - 153,762,401 (+)Ensembl
RefSeq Acc Id: ENSMUST00000182016
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1153,631,730 - 153,636,560 (+)Ensembl
GRCm38.p6 Ensembl1153,755,984 - 153,760,814 (+)Ensembl
RefSeq Acc Id: ENSMUST00000182131
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1153,627,714 - 153,636,560 (+)Ensembl
GRCm38.p6 Ensembl1153,751,968 - 153,760,814 (+)Ensembl
RefSeq Acc Id: ENSMUST00000182538   ⟹   ENSMUSP00000138734
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1153,628,598 - 153,639,967 (+)Ensembl
GRCm38.p6 Ensembl1153,752,852 - 153,764,221 (+)Ensembl
RefSeq Acc Id: ENSMUST00000182722   ⟹   ENSMUSP00000138247
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1153,625,250 - 153,636,576 (+)Ensembl
GRCm38.p6 Ensembl1153,749,504 - 153,760,830 (+)Ensembl
RefSeq Acc Id: ENSMUST00000183241   ⟹   ENSMUSP00000138752
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1153,627,698 - 153,636,644 (+)Ensembl
GRCm38.p6 Ensembl1153,751,952 - 153,760,898 (+)Ensembl
RefSeq Acc Id: NM_011882   ⟹   NP_036012
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391153,625,172 - 153,639,967 (+)NCBI
GRCm381153,749,426 - 153,764,221 (+)NCBI
MGSCv371155,596,556 - 155,611,351 (+)RGD
Celera1156,181,252 - 156,196,205 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006529527   ⟹   XP_006529590
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391153,625,213 - 153,639,961 (+)NCBI
GRCm381153,749,346 - 153,764,215 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006529528   ⟹   XP_006529591
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391153,625,091 - 153,639,961 (+)NCBI
GRCm381153,749,346 - 153,764,215 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011247993   ⟹   XP_011246295
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391153,625,201 - 153,639,961 (+)NCBI
GRCm381153,749,346 - 153,764,215 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030253950   ⟹   XP_030109810
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391153,625,091 - 153,639,961 (+)NCBI
GRCm381153,749,346 - 153,764,215 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030253951   ⟹   XP_030109811
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391153,625,091 - 153,639,961 (+)NCBI
GRCm381153,749,346 - 153,764,215 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030253953   ⟹   XP_030109813
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391153,625,091 - 153,639,967 (+)NCBI
GRCm381153,749,346 - 153,763,219 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036164666   ⟹   XP_036020559
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391153,625,091 - 153,639,967 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036164667   ⟹   XP_036020560
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391153,625,091 - 153,639,967 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036164668   ⟹   XP_036020561
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391153,625,201 - 153,644,441 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036164669   ⟹   XP_036020562
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391153,625,089 - 153,644,441 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_036012   ⟸   NM_011882
- UniProtKB: Q9ERU7 (UniProtKB/Swiss-Prot),   Q05921 (UniProtKB/Swiss-Prot),   B2RQP1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006529591   ⟸   XM_006529528
- Peptide Label: isoform X1
- UniProtKB: Q9ERU7 (UniProtKB/Swiss-Prot),   Q05921 (UniProtKB/Swiss-Prot),   B2RQP1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006529590   ⟸   XM_006529527
- Peptide Label: isoform X1
- UniProtKB: Q9ERU7 (UniProtKB/Swiss-Prot),   Q05921 (UniProtKB/Swiss-Prot),   B2RQP1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011246295   ⟸   XM_011247993
- Peptide Label: isoform X1
- UniProtKB: Q9ERU7 (UniProtKB/Swiss-Prot),   Q05921 (UniProtKB/Swiss-Prot),   B2RQP1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030109810   ⟸   XM_030253950
- Peptide Label: isoform X1
- UniProtKB: Q9ERU7 (UniProtKB/Swiss-Prot),   B2RQP1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030109811   ⟸   XM_030253951
- Peptide Label: isoform X1
- UniProtKB: Q9ERU7 (UniProtKB/Swiss-Prot),   B2RQP1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030109813   ⟸   XM_030253953
- Peptide Label: isoform X1
- UniProtKB: Q9ERU7 (UniProtKB/Swiss-Prot),   B2RQP1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000083385   ⟸   ENSMUST00000086209
RefSeq Acc Id: ENSMUSP00000138752   ⟸   ENSMUST00000183241
RefSeq Acc Id: ENSMUSP00000138247   ⟸   ENSMUST00000182722
RefSeq Acc Id: ENSMUSP00000138734   ⟸   ENSMUST00000182538
RefSeq Acc Id: XP_036020562   ⟸   XM_036164669
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036020559   ⟸   XM_036164666
- Peptide Label: isoform X1
- UniProtKB: Q9ERU7 (UniProtKB/Swiss-Prot),   B2RQP1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036020560   ⟸   XM_036164667
- Peptide Label: isoform X1
- UniProtKB: Q9ERU7 (UniProtKB/Swiss-Prot),   B2RQP1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036020561   ⟸   XM_036164668
- Peptide Label: isoform X2
Protein Domains
KEN   Protein kinase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q05921-F1-model_v2 AlphaFold Q05921 1-735 view protein structure

Promoters
RGD ID:6875276
Promoter ID:EPDNEW_M1089
Type:initiation region
Name:Rnasel_2
Description:Mus musculus ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent), mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M1091  EPDNEW_M1092  EPDNEW_M1090  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381153,749,462 - 153,749,522EPDNEW
RGD ID:6875310
Promoter ID:EPDNEW_M1090
Type:single initiation site
Name:Rnasel_4
Description:Mus musculus ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent), mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M1089  EPDNEW_M1091  EPDNEW_M1092  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381153,751,237 - 153,751,297EPDNEW
RGD ID:6875280
Promoter ID:EPDNEW_M1091
Type:initiation region
Name:Rnasel_1
Description:Mus musculus ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent), mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M1089  EPDNEW_M1092  EPDNEW_M1090  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381153,752,010 - 153,752,070EPDNEW
RGD ID:6875282
Promoter ID:EPDNEW_M1092
Type:initiation region
Name:Rnasel_3
Description:Mus musculus ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent), mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M1089  EPDNEW_M1091  EPDNEW_M1090  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381153,752,860 - 153,752,920EPDNEW
RGD ID:6818394
Promoter ID:MM_KWN:2458
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:NM_011882,   UC007DAF.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361155,596,346 - 155,596,846 (+)MPROMDB
RGD ID:6818395
Promoter ID:MM_KWN:2459
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   Lung
Transcripts:UC007DAH.1,   UC007DAI.1,   UC007DAJ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361155,598,864 - 155,599,364 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1098272 AgrOrtholog
Ensembl Genes ENSMUSG00000066800 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000083385 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000138247.2 UniProtKB/TrEMBL
  ENSMUSP00000138734.3 UniProtKB/TrEMBL
  ENSMUSP00000138752 ENTREZGENE
  ENSMUSP00000138752.2 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000086209 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000182538.3 UniProtKB/TrEMBL
  ENSMUST00000182722.8 UniProtKB/TrEMBL
  ENSMUST00000183241 ENTREZGENE
  ENSMUST00000183241.8 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1440.180 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.25.40.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KEN_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KEN_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNase-L_RNase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:24014 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1098272 ENTREZGENE
NCBI Gene 24014 ENTREZGENE
Pfam Ank_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ank_3 UniProtKB/TrEMBL
  Ank_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ank_5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pkinase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribonuc_2-5A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rnasel PhenoGen
PRINTS ANKYRIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/Swiss-Prot
  ANK_REPEAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KEN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ANK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF56112 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B2RQP1 ENTREZGENE, UniProtKB/TrEMBL
  Q05921 ENTREZGENE
  Q05DT6_MOUSE UniProtKB/TrEMBL
  Q3T9T6_MOUSE UniProtKB/TrEMBL
  Q8BIY0_MOUSE UniProtKB/TrEMBL
  Q9ERU7 ENTREZGENE
  RN5A_MOUSE UniProtKB/Swiss-Prot
  S4R1J5_MOUSE UniProtKB/TrEMBL
  S4R2R4_MOUSE UniProtKB/TrEMBL
  S4UWW3_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q9ERU7 UniProtKB/Swiss-Prot