Arf1 (ADP-ribosylation factor 1) - Rat Genome Database

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Gene: Arf1 (ADP-ribosylation factor 1) Mus musculus
Analyze
Symbol: Arf1
Name: ADP-ribosylation factor 1
RGD ID: 1553445
MGI Page MGI
Description: Enables GTP binding activity and magnesium ion binding activity. Involved in mitotic cleavage furrow ingression. Acts upstream of or within vesicle-mediated transport. Located in Golgi apparatus; cytosol; and sarcomere. Part of protein-containing complex. Is expressed in several structures, including genitourinary system; gut; hemolymphoid system; integumental system; and nervous system. Human ortholog(s) of this gene implicated in periventricular nodular heterotopia. Orthologous to human ARF1 (ADP ribosylation factor 1).
Type: protein-coding
RefSeq Status: VALIDATED
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391159,102,237 - 59,119,042 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1159,102,238 - 59,119,096 (-)EnsemblGRCm39 Ensembl
GRCm381159,211,412 - 59,228,267 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1159,211,412 - 59,228,270 (-)EnsemblGRCm38mm10GRCm38
MGSCv371159,024,914 - 59,041,769 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361159,027,608 - 59,044,381 (-)NCBIMGSCv36mm8
Celera1163,976,432 - 63,993,249 (-)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1137.05NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-nicotine  (EXP)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (EXP)
17alpha-ethynylestradiol  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,4,6-trinitrotoluene  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
5-fluorouracil  (ISO)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (ISO)
Aroclor 1254  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
bexarotene  (ISO)
bisphenol A  (ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
caffeine  (EXP)
captan  (EXP)
carmustine  (ISO)
chlorpyrifos  (EXP)
choline  (EXP)
cisplatin  (ISO)
clofibrate  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
cyclosporin A  (EXP,ISO)
DDT  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dichlorine  (ISO)
dorsomorphin  (ISO)
enzyme inhibitor  (ISO)
erlotinib hydrochloride  (ISO)
ethanol  (EXP,ISO)
flutamide  (ISO)
folic acid  (EXP)
folpet  (EXP)
gemcitabine  (ISO)
genistein  (ISO)
haloperidol  (ISO)
hydralazine  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
irinotecan  (ISO)
ivermectin  (ISO)
josamycin  (ISO)
L-methionine  (EXP)
N-formyl-L-methionyl-L-leucyl-L-phenylalanine  (ISO)
nefazodone  (ISO)
nicotine  (EXP)
ozone  (ISO)
p-chloromercuribenzoic acid  (ISO)
paraquat  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
pyrogallol  (EXP)
resveratrol  (EXP)
SB 431542  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
tamoxifen  (EXP)
temozolomide  (ISO)
tetrachloromethane  (EXP)
theophylline  (ISO)
trichostatin A  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
vincristine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. A gene expression map of human chromosome 21 orthologues in the mouse. Gitton Y, etal., Nature 2002 Dec 5;420(6915):586-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Vesicle budding from endoplasmic reticulum is involved in calsequestrin routing to sarcoplasmic reticulum of skeletal muscles. Nori A, etal., Biochem J 2004 Apr 15;379(Pt 2):505-12.
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. ADP-ribosylation factor 1 protein regulates trypsinogen activation via organellar trafficking of procathepsin B protein and autophagic maturation in acute pancreatitis. Orlichenko L, etal., J Biol Chem. 2012 Jul 13;287(29):24284-93. doi: 10.1074/jbc.M111.328815. Epub 2012 May 8.
6. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Cloning of two novel ADP-ribosylation factor-like proteins and characterization of their differential expression in 3T3-L1 cells. Schurmann A, etal., J Biol Chem 1994 Jun 3;269(22):15683-8.
Additional References at PubMed
PMID:8889548   PMID:8947846   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11092755   PMID:11217851   PMID:11914273   PMID:12376537   PMID:12477932   PMID:12679809  
PMID:12904583   PMID:14610273   PMID:14691545   PMID:15336557   PMID:15489334   PMID:15632162   PMID:15782199   PMID:15836626   PMID:16141072   PMID:16141073   PMID:17347647   PMID:17967808  
PMID:18287559   PMID:18799693   PMID:19005166   PMID:20881058   PMID:21187408   PMID:21447739   PMID:21677750   PMID:21873635   PMID:22794259   PMID:22907437   PMID:23012656   PMID:23288987  
PMID:24089482   PMID:24194600   PMID:24792215   PMID:24951541   PMID:25044020   PMID:25305484   PMID:25737280   PMID:25990896   PMID:26690137   PMID:27535433   PMID:27713690   PMID:28378742  
PMID:28621666   PMID:29740613   PMID:30102570   PMID:30457570   PMID:30472514   PMID:31924786   PMID:32325033   PMID:33310872   PMID:36808153   PMID:36946871   PMID:37118341   PMID:37392777  
PMID:37786300  


Genomics

Comparative Map Data
Arf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391159,102,237 - 59,119,042 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1159,102,238 - 59,119,096 (-)EnsemblGRCm39 Ensembl
GRCm381159,211,412 - 59,228,267 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1159,211,412 - 59,228,270 (-)EnsemblGRCm38mm10GRCm38
MGSCv371159,024,914 - 59,041,769 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361159,027,608 - 59,044,381 (-)NCBIMGSCv36mm8
Celera1163,976,432 - 63,993,249 (-)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1137.05NCBI
ARF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381228,082,708 - 228,099,212 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1228,082,708 - 228,099,212 (+)EnsemblGRCh38hg38GRCh38
GRCh371228,270,409 - 228,286,913 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361226,336,984 - 226,353,536 (+)NCBINCBI36Build 36hg18NCBI36
Build 341224,577,163 - 224,593,645NCBI
Celera1201,460,593 - 201,477,145 (+)NCBICelera
Cytogenetic Map1q42.13NCBI
HuRef1198,785,590 - 198,802,034 (+)NCBIHuRef
CHM1_11229,542,706 - 229,559,258 (+)NCBICHM1_1
T2T-CHM13v2.01227,271,693 - 227,288,198 (+)NCBIT2T-CHM13v2.0
Arf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81044,497,543 - 44,513,994 (-)NCBIGRCr8
mRatBN7.21043,997,983 - 44,014,461 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1043,997,986 - 44,014,434 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1048,692,668 - 48,708,202 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01048,183,026 - 48,198,560 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01043,686,624 - 43,702,158 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01045,562,700 - 45,579,214 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1045,563,547 - 45,579,029 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01045,318,170 - 45,334,673 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41045,516,609 - 45,532,091 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11045,529,387 - 45,545,841 (-)NCBI
Celera1043,262,080 - 43,277,562 (-)NCBICelera
Cytogenetic Map10q22NCBI
Arf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955581319,942 - 335,112 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955581319,942 - 335,112 (-)NCBIChiLan1.0ChiLan1.0
ARF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2121,507,248 - 21,523,835 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1121,445,519 - 21,462,037 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01203,484,803 - 203,501,395 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11208,695,615 - 208,712,105 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1208,695,615 - 208,712,105 (+)Ensemblpanpan1.1panPan2
ARF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.114835,476 - 836,424 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl14835,476 - 836,424 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha14315,387 - 316,334 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.014554,686 - 568,903 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl14554,687 - 568,881 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.114746,548 - 747,495 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.014527,341 - 528,288 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.014513,272 - 514,220 (-)NCBIUU_Cfam_GSD_1.0
Arf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721387,776,242 - 87,778,336 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936864117,510 - 119,612 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl251,219,667 - 51,237,639 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1251,219,597 - 51,237,640 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2253,874,559 - 53,892,570 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ARF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1251,628,836 - 1,644,502 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl251,628,751 - 1,644,499 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660551,510,307 - 1,525,996 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624937857,795 - 871,089 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Arf1
776 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:826
Count of miRNA genes:291
Interacting mature miRNAs:343
Transcripts:ENSMUST00000061242, ENSMUST00000163300
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113776858060402716Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
4141084Spqq1_msperm quality QTL 1 (mouse)Not determined5406567063319522Mouse
1302186Blmpf2_mbleomycin-induced pulmonary fibrosis 2 (mouse)Not determined115406567067078411Mouse
4142148Ckdbp2_mchronic kidney disease blood pressure locus 2 (mouse)Not determined115408094165103841Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5528498572209927Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
13513917Heal54_mwound healing/ regeneration 54 (mouse)115787291759879610Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115849055574754758Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse

Markers in Region
Arf1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381678,544,136 - 78,544,512UniSTSGRCm38
MGSCv371678,544,381 - 78,544,757UniSTSGRCm37
Celera1678,765,868 - 78,766,244UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map16C3.1UniSTS
cM Map11 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001130408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_007476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK077542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL645854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC021403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC031986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN705066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CS066004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D87898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000061242   ⟹   ENSMUSP00000079905
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1159,102,240 - 59,119,096 (-)Ensembl
GRCm38.p6 Ensembl1159,211,414 - 59,228,270 (-)Ensembl
RefSeq Acc Id: ENSMUST00000163300   ⟹   ENSMUSP00000126120
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1159,102,238 - 59,118,988 (-)Ensembl
GRCm38.p6 Ensembl1159,211,412 - 59,228,162 (-)Ensembl
RefSeq Acc Id: NM_001130408   ⟹   NP_001123880
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,102,237 - 59,119,042 (-)NCBI
GRCm381159,211,412 - 59,228,162 (-)NCBI
MGSCv371159,024,914 - 59,041,769 (-)RGD
Celera1163,976,432 - 63,993,249 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_007476   ⟹   NP_031502
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,102,237 - 59,119,042 (-)NCBI
GRCm381159,211,412 - 59,228,267 (-)NCBI
MGSCv371159,024,914 - 59,041,769 (-)RGD
Celera1163,976,432 - 63,993,249 (-)RGD
cM Map11 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001123880 (Get FASTA)   NCBI Sequence Viewer  
  NP_031502 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH31986 (Get FASTA)   NCBI Sequence Viewer  
  BAA13490 (Get FASTA)   NCBI Sequence Viewer  
  BAE28566 (Get FASTA)   NCBI Sequence Viewer  
  BAE28685 (Get FASTA)   NCBI Sequence Viewer  
  BAE29300 (Get FASTA)   NCBI Sequence Viewer  
  BAE29778 (Get FASTA)   NCBI Sequence Viewer  
  BAE30215 (Get FASTA)   NCBI Sequence Viewer  
  BAE30217 (Get FASTA)   NCBI Sequence Viewer  
  BAE30620 (Get FASTA)   NCBI Sequence Viewer  
  BAE30718 (Get FASTA)   NCBI Sequence Viewer  
  BAE30877 (Get FASTA)   NCBI Sequence Viewer  
  BAE31170 (Get FASTA)   NCBI Sequence Viewer  
  BAE31253 (Get FASTA)   NCBI Sequence Viewer  
  BAE31745 (Get FASTA)   NCBI Sequence Viewer  
  BAE34874 (Get FASTA)   NCBI Sequence Viewer  
  BAE39179 (Get FASTA)   NCBI Sequence Viewer  
  BAE39276 (Get FASTA)   NCBI Sequence Viewer  
  BAE39610 (Get FASTA)   NCBI Sequence Viewer  
  BAE39935 (Get FASTA)   NCBI Sequence Viewer  
  BAE40054 (Get FASTA)   NCBI Sequence Viewer  
  BAE40532 (Get FASTA)   NCBI Sequence Viewer  
  BAE40945 (Get FASTA)   NCBI Sequence Viewer  
  BAE41895 (Get FASTA)   NCBI Sequence Viewer  
  CAI84566 (Get FASTA)   NCBI Sequence Viewer  
  EDL07665 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000079905
  ENSMUSP00000079905.7
  ENSMUSP00000126120
  ENSMUSP00000126120.2
GenBank Protein P84078 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_031502   ⟸   NM_007476
- UniProtKB: Q3UDG1 (UniProtKB/Swiss-Prot),   Q3U849 (UniProtKB/Swiss-Prot),   Q3THZ2 (UniProtKB/Swiss-Prot),   Q3UF76 (UniProtKB/Swiss-Prot),   P84078 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001123880   ⟸   NM_001130408
- UniProtKB: Q3UDG1 (UniProtKB/Swiss-Prot),   Q3U849 (UniProtKB/Swiss-Prot),   Q3THZ2 (UniProtKB/Swiss-Prot),   Q3UF76 (UniProtKB/Swiss-Prot),   P84078 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000126120   ⟸   ENSMUST00000163300
RefSeq Acc Id: ENSMUSP00000079905   ⟸   ENSMUST00000061242

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P84078-F1-model_v2 AlphaFold P84078 1-181 view protein structure

Promoters
RGD ID:6846814
Promoter ID:MM_ACW:7564
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:ARF1.FSEP07-UNSPLICED,   ARF1.GSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361159,026,686 - 59,027,186 (-)MPROMDB
RGD ID:6820398
Promoter ID:MM_KWN:7629
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000014412,   UC007JDM.1,   UC007JDO.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361159,041,614 - 59,042,114 (-)MPROMDB
RGD ID:8674804
Promoter ID:EPDNEW_M15433
Type:initiation region
Name:Arf1_1
Description:Mus musculus ADP-ribosylation factor 1 , transcript variant 2,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381159,228,216 - 59,228,276EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:99431 AgrOrtholog
Ensembl Genes ENSMUSG00000048076 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000061242 ENTREZGENE
  ENSMUST00000061242.8 UniProtKB/Swiss-Prot
  ENSMUST00000163300 ENTREZGENE
  ENSMUST00000163300.8 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot
InterPro Arf1_5_like UniProtKB/Swiss-Prot
  P-loop_NTPase UniProtKB/Swiss-Prot
  Small_GTP-bd_dom UniProtKB/Swiss-Prot
  Small_GTPase_ARF UniProtKB/Swiss-Prot
  Small_GTPase_ARF/SAR UniProtKB/Swiss-Prot
KEGG Report mmu:11840 UniProtKB/Swiss-Prot
MGD MGI:99431 ENTREZGENE
NCBI Gene 11840 ENTREZGENE
PANTHER ADP-RIBOSYLATION FACTOR 1 UniProtKB/Swiss-Prot
  PTHR11711 UniProtKB/Swiss-Prot
Pfam Arf UniProtKB/Swiss-Prot
PhenoGen Arf1 PhenoGen
PRINTS SAR1GTPBP UniProtKB/Swiss-Prot
PROSITE ARF UniProtKB/Swiss-Prot
SMART ARF UniProtKB/Swiss-Prot
  RAB UniProtKB/Swiss-Prot
  SAR UniProtKB/Swiss-Prot
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot
UniProt ARF1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3THZ2 ENTREZGENE
  Q3U849 ENTREZGENE
  Q3UDG1 ENTREZGENE
  Q3UF76 ENTREZGENE
UniProt Secondary P10947 UniProtKB/Swiss-Prot
  P32889 UniProtKB/Swiss-Prot
  Q3THZ2 UniProtKB/Swiss-Prot
  Q3U849 UniProtKB/Swiss-Prot
  Q3UDG1 UniProtKB/Swiss-Prot
  Q3UF76 UniProtKB/Swiss-Prot