Sfxn5 (sideroflexin 5) - Rat Genome Database

Name: Sfxn5
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Sfxn5 (sideroflexin 5) Mus musculus

Analyze

Symbol:

Sfxn5

Name:

sideroflexin 5

RGD ID:

1553400

MGI Page

MGI

Description:

Is expressed in medulla oblongata basal plate ventricular layer; midbrain ventricular layer; pons ventricular layer; and spinal cord ventricular layer. Orthologous to human SFXN5 (sideroflexin 5); INTERACTS WITH 1,1-dichloroethene; 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

C230001H08Rik; sideroflexin-5

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SFXN5 (sideroflexin 5)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Sfxn5 (sideroflexin 5)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Sfxn5 (sideroflexin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SFXN5 (sideroflexin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SFXN5 (sideroflexin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Sfxn5 (sideroflexin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SFXN5 (sideroflexin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	SFXN5 (sideroflexin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Sfxn5 (sideroflexin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Sfxn5 (sideroflexin 5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Homo sapiens (human):	SFXN5 (sideroflexin 5)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Danio rerio (zebrafish):	sfxn5a (sideroflexin 5a)	Alliance	DIOPT (TreeFam\|ZFIN)
Danio rerio (zebrafish):	sfxn5b (sideroflexin 5b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam\|ZFIN)
Saccharomyces cerevisiae (baker's yeast):	FSF1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Caenorhabditis elegans (roundworm):	sfxn-5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	85,190,031 - 85,310,488 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	6	85,190,031 - 85,310,404 (-)	Ensembl
GRCm38	6	85,213,049 - 85,333,482 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	85,213,049 - 85,333,422 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	85,163,045 - 85,283,416 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	6	85,178,712 - 85,299,077 (-)	NCBI			mm8
Celera	6	87,185,070 - 87,305,385 (-)	NCBI		Celera
Cytogenetic Map	6	C3	NCBI
cM Map	6	37.23	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (ISO)

1,1-dichloroethene (EXP)

1,2-dimethylhydrazine (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-diaminodiphenylmethane (EXP)

acrolein (ISO)

acrylamide (EXP,ISO)

aflatoxin B1 (EXP,ISO)

alpha-pinene (ISO)

antirheumatic drug (ISO)

benzo[a]pyrene (EXP,ISO)

bisphenol A (ISO)

butanal (ISO)

carbon nanotube (EXP)

cisplatin (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

diazinon (ISO)

dorsomorphin (ISO)

endosulfan (ISO)

ethanol (EXP)

folic acid (EXP)

leflunomide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

mercury dibromide (ISO)

mercury dichloride (ISO)

methyl methanesulfonate (ISO)

ozone (ISO)

p-chloromercuribenzoic acid (ISO)

paracetamol (EXP,ISO)

perfluorononanoic acid (ISO)

phenobarbital (EXP)

phenylmercury acetate (ISO)

SB 431542 (ISO)

sunitinib (ISO)

testosterone (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (ISO)

triphenyl phosphate (ISO)

tunicamycin (ISO)

urethane (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

amino acid transport (IEA)

citrate transport (IBA,ISO)

ion transport (IEA)

mitochondrial transmembrane transport (IBA)

transmembrane transport (IBA,IEA)

Cellular Component

integral component of membrane (IEA)

integral component of mitochondrial inner membrane (IBA)

membrane (IEA)

mitochondrial inner membrane (HDA)

mitochondrion (HDA,ISA,ISO)

Molecular Function

citrate transmembrane transporter activity (IBA,ISO)

ion transmembrane transporter activity (IEA)

protein binding (ISO)

transmembrane transporter activity (IBA)

References

References - curated


1.	MGD data from the GO Consortium
2.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:11274051	PMID:11920565	PMID:12039050	PMID:12477932	PMID:12865426	PMID:14610273	PMID:15533813	PMID:16141072
PMID:16141073	PMID:18614015	PMID:21267068	PMID:21873635	PMID:30068389	PMID:30562941	PMID:32325033

Genomics

Comparative Map Data

Sfxn5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	85,190,031 - 85,310,488 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	6	85,190,031 - 85,310,404 (-)	Ensembl
GRCm38	6	85,213,049 - 85,333,482 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	85,213,049 - 85,333,422 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	85,163,045 - 85,283,416 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	6	85,178,712 - 85,299,077 (-)	NCBI			mm8
Celera	6	87,185,070 - 87,305,385 (-)	NCBI		Celera
Cytogenetic Map	6	C3	NCBI
cM Map	6	37.23	NCBI

SFXN5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	2	72,942,036 - 73,075,619 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	2	72,942,036 - 73,071,712 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	2	73,169,165 - 73,298,841 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	73,022,673 - 73,152,473 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	2	73,080,820 - 73,210,620	NCBI
Celera	2	73,020,012 - 73,149,807 (-)	NCBI
Cytogenetic Map	2	p13.2	NCBI
HuRef	2	72,904,762 - 73,034,523 (-)	NCBI		HuRef
CHM1_1	2	73,099,350 - 73,229,443 (-)	NCBI		CHM1_1

Sfxn5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	117,750,213 - 117,869,826 (-)	NCBI
Rnor_6.0 Ensembl	4	116,993,914 - 117,111,653 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	4	116,995,238 - 117,111,548 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	4	181,575,048 - 181,691,684 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	119,462,697 - 119,583,363 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	4	119,707,177 - 119,827,844 (-)	NCBI
Celera	4	106,735,952 - 106,852,599 (-)	NCBI		Celera
Cytogenetic Map	4	q34	NCBI

Sfxn5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955424	12,545,985 - 12,659,293 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955424	12,545,985 - 12,659,238 (+)	NCBI	ChiLan1.0	ChiLan1.0

SFXN5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	2A	74,487,505 - 74,617,200 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
Mhudiblu_PPA_v0	2A	72,994,664 - 73,125,483 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

SFXN5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	17	49,773,883 - 49,894,400 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	17	49,773,446 - 49,896,373 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Sfxn5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936491	16,769,960 - 16,882,776 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SFXN5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	69,701,149 - 69,839,893 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	69,701,021 - 69,833,971 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	72,903,534 - 73,033,072 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SFXN5
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	34,095,375 - 34,224,716 (+)	NCBI
ChlSab1.1 Ensembl	14	34,095,538 - 34,221,744 (+)	Ensembl

Sfxn5
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624762	563,023 - 685,375 (+)	NCBI

Position Markers

D6Mit391

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	85,277,319 - 85,277,419	UniSTS	GRCm38
MGSCv37	6	85,227,313 - 85,227,413	UniSTS	GRCm37
Celera	6	87,249,415 - 87,249,523	UniSTS
Cytogenetic Map	6	D1	UniSTS
cM Map	6	35.3	UniSTS
Whitehead Genetic	6	25.7125	UniSTS
Whitehead/MRC_RH	6	874.57	UniSTS

C75969

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	85,335,191 - 85,335,347	UniSTS	GRCm38
MGSCv37	6	85,285,185 - 85,285,341	UniSTS	GRCm37
Celera	6	87,307,154 - 87,307,310	UniSTS
Cytogenetic Map	6	D1	UniSTS
Cytogenetic Map	6	C3	UniSTS
cM Map	6	35.59	UniSTS
cM Map	6	35.5	UniSTS
Whitehead/MRC_RH	6	864.61	UniSTS

RH126025

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	85,335,020 - 85,335,229	UniSTS	GRCm38
MGSCv37	6	85,285,014 - 85,285,223	UniSTS	GRCm37
Celera	6	87,306,983 - 87,307,192	UniSTS
Cytogenetic Map	6	D1	UniSTS
Cytogenetic Map	6	C3	UniSTS
cM Map	6	35.5	UniSTS
Whitehead/MRC_RH	6	877.0	UniSTS

RH140790

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	85,213,073 - 85,213,214	UniSTS	GRCm38
MGSCv37	6	85,163,067 - 85,163,208	UniSTS	GRCm37
Celera	6	87,185,092 - 87,185,233	UniSTS
Cytogenetic Map	6	D1	UniSTS
cM Map	6	35.59	UniSTS

D6Mit6

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	85,277,319 - 85,277,417	UniSTS	GRCm38
MGSCv37	6	85,227,313 - 85,227,411	UniSTS	GRCm37
Celera	6	87,249,415 - 87,249,521	UniSTS
Cytogenetic Map	6	D1	UniSTS
cM Map	6	35.3	UniSTS
Whitehead Genetic	6	25.1	UniSTS

D4Rat47

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	85,300,090 - 85,300,256	UniSTS	GRCm38
MGSCv37	6	85,250,084 - 85,250,250	UniSTS	GRCm37
Celera	6	87,272,067 - 87,272,233	UniSTS
Cytogenetic Map	6	D1	UniSTS
cM Map	6	35.59	UniSTS

RH70059

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	85,315,485 - 85,316,260	UniSTS	GRCm38
MGSCv37	6	85,265,479 - 85,266,254	UniSTS	GRCm37
Celera	6	87,287,441 - 87,288,216	UniSTS
Cytogenetic Map	6	D1	UniSTS
cM Map	6	35.59	UniSTS

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
25440480	Moaq2_m	modifier of alien QTL 2 (mouse)					6	1	117500000	Mouse
26884414	Bzwq12_m	bi-zygomatic width QTL 12, 16 week (mouse)					6	3400000	139100000	Mouse
1300556	Cia6_m	collagen induced arthritis QTL 6 (mouse)			Not determined		6	4464884	87426034	Mouse
4142126	W3q3_m	weight 3 weeks QTL 3 (mouse)			Not determined			4503823	96656149	Mouse
4142361	W10q11_m	weight 10 weeks QTL 11 (mouse)			Not determined			4503823	96656149	Mouse
4142271	Egq8_m	early growth QTL 8 (mouse)			Not determined			4503823	96656149	Mouse
4142232	W6q4_m	weight 6 weeks QTL 4 (mouse)			Not determined			4503823	96656149	Mouse
1558984	Cplaq9_m	circadian period of locomotor activity 9 (mouse)			Not determined		6	38669625	92607450	Mouse
1300618	Pgia19_m	proteoglycan induced arthritis 19 (mouse)			Not determined		6	45314059	87426034	Mouse
10412157	Fl1n_m	fatty liver 1 in NSY (mouse)			Not determined		6	45314059	128835032	Mouse
4142259	Tabw2_m	tally ho associated body weight 2 (mouse)			Not determined			46935985	136423692	Mouse
25314319	Histh6_m	histamine hypersensitivity 6 (mouse)					6	48720000	125360000	Mouse
25314320	Histh5_m	histamine hypersensitivity 5 (mouse)					6	48720000	148450000	Mouse
1301962	Eila2_m	ethanol induced locomotor activity 2 (mouse)			Not determined		6	48726556	125356785	Mouse
1357683	Igf1sl1_m	IGF-1 serum levels 1 (mouse)			Not determined		6	52161713	116155267	Mouse
4141028	Mclr_m	methylcholanthrene lymphoma resistance (mouse)			Not determined			54373427	88379171	Mouse
15039373	Adip28_m	adiposity 28 (mouse)					6	56308211	90308211	Mouse
15039375	Bw41_m	body weight QTL 41 (mouse)					6	56308211	90308211	Mouse
1558977	Skmw10_m	skeletal muscle weight 10 (mouse)			Not determined		6	58447583	92447710	Mouse
10043972	Obq28_m	obesity QTL 28 (mouse)			Not determined		6	58540433	92540433	Mouse
1301740	Bwq2_m	body weight QTL 2 (mouse)			Not determined		6	60057680	94057799	Mouse
1301369	Im4_m	immunoregulatory 4 (mouse)			Not determined		6	63484738	97484905	Mouse
1300650	Bw18_m	body weight QTL 18 (mouse)			Not determined		6	66713869	100714031	Mouse
1301876	Bits2_m	bitterness sensitivity 2 (mouse)			Not determined		6	70425898	104426034	Mouse
1301813	Skl3_m	skeletal size (tail length) 3 (mouse)			Not determined		6	70425898	104426034	Mouse
1301034	Egrm2_m	early growth rate (mouse)			Not determined		6	70425898	104426034	Mouse
4141990	Etax6_m	ethanol induced ataxia 6 (mouse)			Not determined			71322621	86275719	Mouse
1302020	Bbaa20_m	B.burgdorferi-associated arthritis 20 (mouse)			Not determined		6	71322621	93464093	Mouse
1300869	Stheal5_m	soft tissue heal 5 (mouse)			Not determined		6	71575060	105575178	Mouse
1300954	Fcsa1_m	femoral cross-sectional area 1 (mouse)			Not determined		6	71981024	105981170	Mouse
1301521	Pas1c_m	pulmonary adenoma susceptibility 1c (mouse)			Not determined		6	71981024	105981170	Mouse
13506930	Recrq9_m	recombination rate in male meiosis QTL 9 (mouse)					6	73500000	134700000	Mouse
1301320	Ots1_m	ovarian teratoma susceptibility 1 (mouse)			Not determined		6	75447583	104503555	Mouse
1301571	Arrd1_m	age-related retinal degeneration 1 (mouse)			Not determined		6	75544356	92607450	Mouse
1300674	Nidd3n_m	non-insulin-dependent diabetes mellitus 3 in NSY (mouse)			Not determined		6	75544356	94225955	Mouse
10412195	Efw_m	epididymal fat weight (mouse)			Not determined		6	75544356	94225955	Mouse
10043901	Pfat5_m	predicted fat percentage 5 (mouse)			Not determined		6	75607306	109607450	Mouse
10412208	Cypr4_m	cytokine production 4 (mouse)			Not determined		6	75716503	109716697	Mouse
1357875	Pfat2_m	predicted fat percentage 2 (mouse)			Not determined		6	76463949	110464093	Mouse
14697704	Stsl4_m	Salmonella typhimurium susceptibility locus 4 (mouse)					6	77100000	90000000	Mouse
13824985	Alh1_m	amplitude of lateral head displacement 1 (mouse)					6	78000000	97000000	Mouse
4141376	Dbm1_m	diabetes modifier 1 (mouse)			Not determined		6	78629504	121115387	Mouse
14696731	Pairq1_m	P. aeruginosa infection resistance QTL 1 (mouse)					6	81500000	102200000	Mouse
10043864	T2dm4sa_m	type 2 diabetes mellitus 4 in SMXA RI mice (mouse)			Not determined		6	83713869	147052561	Mouse
11251720	Ewc4_m	ethanol withdrawal and consumption 4 (mouse)					6	84122513	118122513	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	2100
Count of miRNA genes:	770
Interacting mature miRNAs:	1047
Transcripts:	ENSMUST00000045846, ENSMUST00000059034, ENSMUST00000113787, ENSMUST00000113788, ENSMUST00000134392, ENSMUST00000138489, ENSMUST00000148179, ENSMUST00000149362
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_178639	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006506816	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_030255684	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_036152414	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC153605	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF325264	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK036285	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK038793	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK043706	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK078142	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK082073	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK164150	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BB628882	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC089588	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC099507	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466523	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CR354750	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000045846 ⟹ ENSMUSP00000041872

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	85,213,049 - 85,333,422 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000059034 ⟹ ENSMUSP00000054648

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	85,234,380 - 85,333,419 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000113787 ⟹ ENSMUSP00000109417

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	85,318,872 - 85,332,750 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000113788 ⟹ ENSMUSP00000109418

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	85,299,083 - 85,333,422 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000134392

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	85,229,307 - 85,264,933 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000138489

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	85,299,085 - 85,320,398 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000148179

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	85,268,714 - 85,333,406 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000149362

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	85,294,922 - 85,333,419 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000203035

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	85,328,947 - 85,333,422 (-)	Ensembl

RefSeq Acc Id:

NM_178639 ⟹ NP_848754

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	85,190,033 - 85,310,404 (-)	NCBI
GRCm38	6	85,213,051 - 85,333,422 (-)	NCBI
MGSCv37	6	85,163,045 - 85,283,416 (-)	RGD
Celera	6	87,185,070 - 87,305,385 (-)	RGD
cM Map	6		ENTREZGENE

Sequence:

show sequence

AGTGGCCATGGCGGATACAGCAACCACAGCCTCAGCGGCGTCCGCGGCGGCCAGTGCCCCGAAC
GCCTCCACAGATGCGCCCCCTTTCCAGCTGGGCAAGCCCCGCTTCCAGCAGACATCCTTCTACG
GTCGCTTCAGGCACTTCTTGGACATCATCGATCCTCGAACACTCTTTGTCACTGAGAAACGTCT
CAGAGAGGCTGTGCAACTGCTGGAGGATTACAAGCATGGCACCCTGCGCCCAGGAGTTACAAAT
GAACAGCTCTGGAGTGCACAGAAAATCAAACAGGCTATCCTACACCCGGACACCAACGAGAAGA
TCTTCATGCCTTTCAGAATGTCAGGTTACATTCCTTTCGGGACGCCAATTGTGGTGGGACTTCT
CTTGCCTAACCAGACGCTGGCATCCACTGTCTTCTGGCAGTGGCTGAACCAGAGCCATAATGCC
TGTGTCAACTATGCAAACCGCAATGCTACCAAGCCTTCACCTGCATCCAAGTTCATCCAGGGCT
ACCTGGGCGCTGTCATCAGTGCTGTTTCCATTGCTGTGGGCCTTAATGTGCTGGTTCAGAAAGC
AAACAAGTTCACTCCAGCTACTCGCCTTCTCGTGCAGAGATTTGTACCCTTCCCTGCAGTAGCC
AGTGCCAATATCTGCAACGTGGTCCTGATGCGATATGGGGAGTTAGAGGAAGGAATTGATGTCC
TGGATGCTGATGGCAACCTCGTGGGCTCCTCAAAGATTGCAGCCAGACACGCCCTGCTGGAGAC
AGCTCTGACACGTGTGGTTCTGCCTATGCCCATTCTGGTGCTTCCTCCAATCGTCATGTCCATG
CTGGAGAAGACAGCTCTCTTGCAAGCACGCCCGCGGCTACTCCTACCTGTGCATAGCCTCGTGT
GCCTGGCAGCCTTCGGCCTGGCCCTGCCGCTGGCCATCAGCCTTTTCCCGCAGATGTCAGAGAT
TGAAACCTCCCAATTGGAGCCTGAGATAGCCCGGGCTACCAGCAGCCGGACAGTGGTGTACAAT
AAGGGGCTGTGAGTGAAGACCAGCCGGCCTGGGCACACAGCACTATCCAGGCCGGGCGTTCGGG
GTGGGGAGAGAAGTCTCTTGAGCTGTCTCTGCAAGGAGGGGCTGCCTGGAAAGCAGCCAACCTC
CGTCAGTAGGGAGACTAACCATTCACATTTTAACATAGGGGAGAGGAATTCTGACACATTTCCT
ACACAAAAAGAATCAAGTGCATCTCTGGGCCTTACATGGGGTCAGCTAAACTCCACTCAGCACA
ATTTCGTGTGAGCTAAAGAACTGTAGAGTGCTTCTGGGGTAGAAGTAGTATCCTTTTATATGTT
CTTTTTTTTTTTTTTTTCGGTTTGTTTTAATTTTTTTTTTATTAGAAGCAAGTCTGAGCCTTGG
TTGCAGCTGACCAAAAGTAGCAGGACAGGTGGCGGGAGCCAGAGGAGCATGGGAACTGGTTTGC
ATTGATGGGAGGGGAGTATAATGGTTAGGCCTGGTGGGCCCCTCGGGTTAGAGAAGGGAAGGGA
AGGGAGGTGGTCTGCACCCCACAGGATGAACCAAGGTTTTTGGGAATTGGCTTTCTCTATCAAA
GAGCACTAGAGACCCCTTGGAAGATTCCGGGAACACCAGGCTCTGAATGTACCCAGCTCCTACC
CACCCCACAGCTGAGGGAAAGTCAGATGACCCCAGGCACGGGTCATCTTTCATGGAGCTCTTAT
TGATTCCAGGTCCCTGAGAGTAGCCCAGCTCTAGTCAGGGATCCCCAAGAAGCAACACTGTTCT
GTGGGAACAAGGAGAGAGGATCCTGCCTGGGCTTTGCAGGAGGGTTCTTTTCCACAAGTAGCTA
GAGTTTCCTACGGGGACAAAGGTGGGCTGAGCCCACTGTGGTCCAGTCTGCAGCCACTGAAGCT
GTCACAACCCACACCTTTCTGCAATAGAGGAGTCTCCTGCCTGAGGGTGCAAGGCCGGATCCTG
AGGGTGCAACTGCCTGAGAGGTCGCCTCAGCAATGGACAAGCCACCCACATCTCCGAGCTTCCA
TTCCCTGCCTGGAAGCGAAGGACTGAACTTGGGTTCCCCACAAGCCTGGGGCTCCTCTCTACCT
GCTTCACTCAGATGTGCACATTCCAGGCATCTCAAAGGTGGATTCTGGACTGGAAAGTGCATCA
GGCCATTCTGGAAATGGCCAGCACTTAGCCTACAAAAGCACCTTGTCCTTCTGTGTGGACTCCC
CTACATCCTAAAAAACCTTGACTTGTGCCAAACCCTTCCTGGCTGTGGAGGAGGCAGTATGGAT
GCCTGAGCTGAGCTTAGGGGTCACACGGCATGCCCTTCCTCACTGCTGCAGACTTGGGGCCTCT
TGCTGCTGGCTCCATCTCGTCACGTGTAGGCCACAGAGGAAGAGATAGCTCTACCTAAGGAGGC
AGGGTCTGGGTGAGCTGAACAGGGTGACTCCTGGTCCAAAGGACCCACAGAGAGGAGATACACT
GATCTCTACACAGCCCTCATCTGTCCACCCTAGGATGGGAACCCTGGCTCATGACCCTGGAATC
TGACACAGGAGGGGTCAGGCTGAAGATCAACATGTATGGTTGCAGAAAAAGGCTGGCGCGAGGC
AGCAAGGACAAGGTCACAGGTTCCCTGCCAGCATCTTAAGGCAGGTGTAGCTGTAGCAAGATGG
GCTGAGCATGGGTATTGGGCTCCAGGCCTTGGCTGGACACTAGATCTGTTTGCTGAAGCCTCTT
TTGAAAAGTTCATTCTCAGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTCCCCACTTGTCCTG
GAGCCTTGTCCTTATGCATTTATCTTGGGACCAAAACCTCCCTCCCCCAGGCCTGCCTGCTCCA
GAGGTTCTTCCAGCTCGCCCTCTGTGCTGGCTGTCCCCATGGCCTCAGTACCCCTCGTAGGTGT
GTTTTGTGTGTGGAGTGATTTCTGCCATGCTCCAATACACCCTGAGCCCAGGTGAGCTGAGGGG
GCAACTCCTTTGGATTTGCTGTGACAGATGGTCCTTGTGGCCCACAGTGATGGTGGCTGAGCGT
CTTGAGCCATGCTGTTAAACCCTGTTTTGACTTCATAAAAATCCATAAGGGAAGCTTTCTGTGA
ATGCAAATGTCCCTATTTGCTGAGGCTAGGGGACAGAAAGAGGCCTGGAGGAAAGGGGGCAAAT
TACCTCTCGTTGGGTGTGGTTTTTCCAGCAGTCAGGGCAAATCTACAGCAGGCTCTCCAGCTCT
GATGTTCCTGGCCAACTCTCCTCTGATAACTTTTAAACATTCCCTGAAGGATGCTCTTCCATCT
CTGGAAAGCAATTTGGGAGTACAGGAACCAAAAGTCCAAGATGCCAAATGGCCACCGAACCAAG
ATGTCTGCACTCTGTCTCATTTCCTAATTGTGGCTGTCTTATGAAAGTCTCTGGTCTGGGGAAG
GGTGGGGCACTGAGGAGAGGGGCCAGTGGGAGGCAGGTCCATGCTAAGCTTCCAGCCTTGGGCA
GGTATGAGTGAGGCTCAACACGTATGCCTCAGCATACCTAGGGACTTCAGACTTTTTAACCTCA
GAAAATGTCTCAATGTATGTGATTTATGTCATACTAACGGGCTGTGGGCAATAAACATGAATTT
AAAACA

hide sequence

RefSeq Acc Id:

XM_006506816 ⟹ XP_006506879

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	85,190,031 - 85,310,488 (-)	NCBI
GRCm38	6	85,213,049 - 85,333,482 (-)	NCBI

Sequence:

show sequence

AGGCAACTGTGGCGGGGGCCGAGGAGGGACATTTTAAAAGGGCTGGAGATTGCGGGCGTCAGTG
GCCATGGCGGATACAGCAACCACAGCCTCAGCGGCGTCCGCGGCGGCCAGTGCCCCGAACGCCT
CCACAGATGCGCCCCCTTTCCAGCTGGGCAAGCCCCGCTTCCAGCAGACATCCTTCTACGGTCG
CTTCAGGCACTTCTTGGACATCATCGATCCTCGAACACTCTTTGTCACTGAGAAACGTCTCAGA
GAGGCTGTGCAACTGCTGGAGGATTACAAGCATGGCACCCTGCGCCCAGGAGTTACAAATGAAC
AGCTCTGGAGTGCACAGAAAATCAAACAGGCTATCCTACACCCGGACACCAACGAGAAGATCTT
CATGCCTTTCAGAATGTCAGGTTACATTCCTTTCGGGACGCCAATTGTGGTGGGACTTCTCTTG
CCTAACCAGACGCTGGCATCCACTGTCTTCTGGCAGTGGCTGAACCAGAGCCATAATGCCTGTG
TCAACTATGCAAACCGCAATGCTACCAAGCCTTCACCTGCATCCAAGTTCATCCAGGGCTACCT
GGGCGCTGTCATCAGTGCTGTTTCCATTGCTGTGGGCCTTAATGTGCTGGTTCAGAAAGCAAAC
AAGTTCACTCCAGCTACTCGCCTTCTCGTGCAGAGATTTGTACCCTTCCCTGCAGTAGGGAACA
ACCGTGATGGAGGACTCTGCCGCAGGAAGGAGTGGGATGCAAGAGAGTCTGTCTCCAGTGCCAA
TATCTGCAACGTGGTCCTGATGCGATATGGGGAGTTAGAGGAAGGAATTGATGTCCTGGATGCT
GATGGCAACCTCGTGGGCTCCTCAAAGATTGCAGCCAGACACGCCCTGCTGGAGACAGCTCTGA
CACGTGTGGTTCTGCCTATGCCCATTCTGGTGCTTCCTCCAATCGTCATGTCCATGCTGGAGAA
GACAGCTCTCTTGCAAGCACGCCCGCGGCTACTCCTACCTGTGCATAGCCTCGTGTGCCTGGCA
GCCTTCGGCCTGGCCCTGCCGCTGGCCATCAGCCTTTTCCCGCAGATGTCAGAGATTGAAACCT
CCCAATTGGAGCCTGAGATAGCCCGGGCTACCAGCAGCCGGACAGTGGTGTACAATAAGGGGCT
GTGAGTGAAGACCAGCCGGCCTGGGCACACAGCACTATCCAGGCCGGGCGTTCGGGGTGGGGAG
AGAAGTCTCTTGAGCTGTCTCTGCAAGGAGGGGCTGCCTGGAAAGCAGCCAACCTCCGTCAGTA
GGGAGACTAACCATTCACATTTTAACATAGGGGAGAGGAATTCTGACACATTTCCTACACAAAA
AGAATCAAGTGCATCTCTGGGCCTTACATGGGGTCAGCTAAACTCCACTCAGCACAATTTCGTG
TGAGCTAAAGAACTGTAGAGTGCTTCTGGGGTAGAAGTAGTATCCTTTTATATGTTCTTTTTTT
TTTTTTTTTCGGTTTGTTTTAATTTTTTTTTTATTAGAAGCAAGTCTGAGCCTTGGTTGCAGCT
GACCAAAAGTAGCAGGACAGGTGGCGGGAGCCAGAGGAGCATGGGAACTGGTTTGCATTGATGG
GAGGGGAGTATAATGGTTAGGCCTGGTGGGCCCCTCGGGTTAGAGAAGGGAAGGGAAGGGAGGT
GGTCTGCACCCCACAGGATGAACCAAGGTTTTTGGGAATTGGCTTTCTCTATCAAAGAGCACTA
GAGACCCCTTGGAAGATTCCGGGAACACCAGGCTCTGAATGTACCCAGCTCCTACCCACCCCAC
AGCTGAGGGAAAGTCAGATGACCCCAGGCACGGGTCATCTTTCATGGAGCTCTTATTGATTCCA
GGTCCCTGAGAGTAGCCCAGCTCTAGTCAGGGATCCCCAAGAAGCAACACTGTTCTGTGGGAAC
AAGGAGAGAGGATCCTGCCTGGGCTTTGCAGGAGGGTTCTTTTCCACAAGTAGCTAGAGTTTCC
TACGGGGACAAAGGTGGGCTGAGCCCACTGTGGTCCAGTCTGCAGCCACTGAAGCTGTCACAAC
CCACACCTTTCTGCAATAGAGGAGTCTCCTGCCTGAGGGTGCAAGGCCGGATCCTGAGGGTGCA
ACTGCCTGAGAGGTCGCCTCAGCAATGGACAAGCCACCCACATCTCCGAGCTTCCATTCCCTGC
CTGGAAGCGAAGGACTGAACTTGGGTTCCCCACAAGCCTGGGGCTCCTCTCTACCTGCTTCACT
CAGATGTGCACATTCCAGGCATCTCAAAGGTGGATTCTGGACTGGAAAGTGCATCAGGCCATTC
TGGAAATGGCCAGCACTTAGCCTACAAAAGCACCTTGTCCTTCTGTGTGGACTCCCCTACATCC
TAAAAAACCTTGACTTGTGCCAAACCCTTCCTGGCTGTGGAGGAGGCAGTATGGATGCCTGAGC
TGAGCTTAGGGGTCACACGGCATGCCCTTCCTCACTGCTGCAGACTTGGGGCCTCTTGCTGCTG
GCTCCATCTCGTCACGTGTAGGCCACAGAGGAAGAGATAGCTCTACCTAAGGAGGCAGGGTCTG
GGTGAGCTGAACAGGGTGACTCCTGGTCCAAAGGACCCACAGAGAGGAGATACACTGATCTCTA
CACAGCCCTCATCTGTCCACCCTAGGATGGGAACCCTGGCTCATGACCCTGGAATCTGACACAG
GAGGGGTCAGGCTGAAGATCAACATGTATGGTTGCAGAAAAAGGCTGGCGCGAGGCAGCAAGGA
CAAGGTCACAGGTTCCCTGCCAGCATCTTAAGGCAGGTGTAGCTGTAGCAAGATGGGCTGAGCA
TGGGTATTGGGCTCCAGGCCTTGGCTGGACACTAGATCTGTTTGCTGAAGCCTCTTTTGAAAAG
TTCATTCTCAGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTCCCCACTTGTCCTGGAGCCTTG
TCCTTATGCATTTATCTTGGGACCAAAACCTCCCTCCCCCAGGCCTGCCTGCTCCAGAGGTTCT
TCCAGCTCGCCCTCTGTGCTGGCTGTCCCCATGGCCTCAGTACCCCTCGTAGGTGTGTTTTGTG
TGTGGAGTGATTTCTGCCATGCTCCAATACACCCTGAGCCCAGGTGAGCTGAGGGGGCAACTCC
TTTGGATTTGCTGTGACAGATGGTCCTTGTGGCCCACAGTGATGGTGGCTGAGCGTCTTGAGCC
ATGCTGTTAAACCCTGTTTTGACTTCATAAAAATCCATAAGGGAAGCTTTCTGTGAATGCAAAT
GTCCCTATTTGCTGAGGCTAGGGGACAGAAAGAGGCCTGGAGGAAAGGGGGCAAATTACCTCTC
GTTGGGTGTGGTTTTTCCAGCAGTCAGGGCAAATCTACAGCAGGCTCTCCAGCTCTGATGTTCC
TGGCCAACTCTCCTCTGATAACTTTTAAACATTCCCTGAAGGATGCTCTTCCATCTCTGGAAAG
CAATTTGGGAGTACAGGAACCAAAAGTCCAAGATGCCAAATGGCCACCGAACCAAGATGTCTGC
ACTCTGTCTCATTTCCTAATTGTGGCTGTCTTATGAAAGTCTCTGGTCTGGGGAAGGGTGGGGC
ACTGAGGAGAGGGGCCAGTGGGAGGCAGGTCCATGCTAAGCTTCCAGCCTTGGGCAGGTATGAG
TGAGGCTCAACACGTATGCCTCAGCATACCTAGGGACTTCAGACTTTTTAACCTCAGAAAATGT
CTCAATGTATGTGATTTATGTCATACTAACGGGCTGTGGGCAATAAACATGAATTTAAAACACA

hide sequence

RefSeq Acc Id:

XM_030255684 ⟹ XP_030111544

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	85,190,031 - 85,310,041 (-)	NCBI
GRCm38	6	85,213,049 - 85,333,059 (-)	NCBI

Sequence:

show sequence

CCCCGTCCTAGTCGCTCGATGATTGGCCACGCGGGTCGCGGTCCAGGGTCCGAGCGGCTCTGAA
GGGGTCGCTCTGGCAAATGCGCCCTAGGCGCAAAGTTCCCGTCTTGTGATGCATGGGCCGGTGG
TGTGGCCGGTATGCTCCTCAACTTCTCCCCGAGTGGGACTGACCTTTCTTGTGAGCTGCGGGAC
AGTCTCCGGGCAAAACTCCCTGGGCACGCCCCATGGTCATGCTCCGGTTCCTCAACCTCCAGCA
AGGTGCTGCGTGTGCCCTAGGATGGGACCGCGTGCACCGGTACAGCGACCTGATCTCTGTCCGG
GGGCCTGGGGCTTCAGTGATGAGACCAGCCGGACAGCTAGTGCGTTCTGCGGGGATGCGGCTGG
GACAACGCGGAGAGAGCCCGGTGCGGGGAAACGCTGTGTCATTCTCCGAAGCTGAGCTCTCCTC
CCAAGGGTCCCAAGTGCGCCCCAGTCCTACTTGCGCTGCTCCCGGCCGCTGCGCAGCGCTGGCC
CCCATCCACACCCGCTTGGGCTCTTCAGGGTGCACCGTGACTATGATTAACCTTACTTGGGGAC
ACGCCAACCCAAGAAACCCGGGTATCACTAACTCGGCCATGGAACCGGAGGTCCAGGTCTGTGA
GCCAGGAGCATGGGAGCTTAGTTATTACGCCGCAGACCCTCAGACTGCTTCCAGAGCTGAAGTG
ACCCTGGGCTTGCCAGGAGTGGGGACAGCAGATGTGCTAGAGAAAACTTTGAAGGAAGAAAGAA
AATGCTACAAAGACATCCTTCTACGGTCGCTTCAGGCACTTCTTGGACATCATCGATCCTCGAA
CACTCTTTGTCACTGAGAAACGTCTCAGAGAGGCTGTGCAACTGCTGGAGGATTACAAGCATGG
CACCCTGCGCCCAGGAGTTACAAATGAACAGCTCTGGAGTGCACAGAAAATCAAACAGGCTATC
CTACACCCGGACACCAACGAGAAGATCTTCATGCCTTTCAGAATGTCAGGTTACATTCCTTTCG
GGACGCCAATTGTGGTGGGACTTCTCTTGCCTAACCAGACGCTGGCATCCACTGTCTTCTGGCA
GTGGCTGAACCAGAGCCATAATGCCTGTGTCAACTATGCAAACCGCAATGCTACCAAGCCTTCA
CCTGCATCCAAGTTCATCCAGGGCTACCTGGGCGCTGTCATCAGTGCTGTTTCCATTGCTGTGG
GCCTTAATGTGCTGGTTCAGAAAGCAAACAAGTTCACTCCAGCTACTCGCCTTCTCGTGCAGAG
ATTTGTACCCTTCCCTGCAGTAGGGAACAACCGTGATGGAGGACTCTGCCGCAGGAAGGAGTGG
GATGCAAGAGAGTCTGTCTCCAGTGCCAATATCTGCAACGTGGTCCTGATGCGATATGGGGAGT
TAGAGGAAGGAATTGATGTCCTGGATGCTGATGGCAACCTCGTGGGCTCCTCAAAGATTGCAGC
CAGACACGCCCTGCTGGAGACAGCTCTGACACGTGTGGTTCTGCCTATGCCCATTCTGGTGCTT
CCTCCAATCGTCATGTCCATGCTGGAGAAGACAGCTCTCTTGCAAGCACGCCCGCGGCTACTCC
TACCTGTGCATAGCCTCGTGTGCCTGGCAGCCTTCGGCCTGGCCCTGCCGCTGGCCATCAGCCT
TTTCCCGCAGATGTCAGAGATTGAAACCTCCCAATTGGAGCCTGAGATAGCCCGGGCTACCAGC
AGCCGGACAGTGGTGTACAATAAGGGGCTGTGAGTGAAGACCAGCCGGCCTGGGCACACAGCAC
TATCCAGGCCGGGCGTTCGGGGTGGGGAGAGAAGTCTCTTGAGCTGTCTCTGCAAGGAGGGGCT
GCCTGGAAAGCAGCCAACCTCCGTCAGTAGGGAGACTAACCATTCACATTTTAACATAGGGGAG
AGGAATTCTGACACATTTCCTACACAAAAAGAATCAAGTGCATCTCTGGGCCTTACATGGGGTC
AGCTAAACTCCACTCAGCACAATTTCGTGTGAGCTAAAGAACTGTAGAGTGCTTCTGGGGTAGA
AGTAGTATCCTTTTATATGTTCTTTTTTTTTTTTTTTTCGGTTTGTTTTAATTTTTTTTTTATT
AGAAGCAAGTCTGAGCCTTGGTTGCAGCTGACCAAAAGTAGCAGGACAGGTGGCGGGAGCCAGA
GGAGCATGGGAACTGGTTTGCATTGATGGGAGGGGAGTATAATGGTTAGGCCTGGTGGGCCCCT
CGGGTTAGAGAAGGGAAGGGAAGGGAGGTGGTCTGCACCCCACAGGATGAACCAAGGTTTTTGG
GAATTGGCTTTCTCTATCAAAGAGCACTAGAGACCCCTTGGAAGATTCCGGGAACACCAGGCTC
TGAATGTACCCAGCTCCTACCCACCCCACAGCTGAGGGAAAGTCAGATGACCCCAGGCACGGGT
CATCTTTCATGGAGCTCTTATTGATTCCAGGTCCCTGAGAGTAGCCCAGCTCTAGTCAGGGATC
CCCAAGAAGCAACACTGTTCTGTGGGAACAAGGAGAGAGGATCCTGCCTGGGCTTTGCAGGAGG
GTTCTTTTCCACAAGTAGCTAGAGTTTCCTACGGGGACAAAGGTGGGCTGAGCCCACTGTGGTC
CAGTCTGCAGCCACTGAAGCTGTCACAACCCACACCTTTCTGCAATAGAGGAGTCTCCTGCCTG
AGGGTGCAAGGCCGGATCCTGAGGGTGCAACTGCCTGAGAGGTCGCCTCAGCAATGGACAAGCC
ACCCACATCTCCGAGCTTCCATTCCCTGCCTGGAAGCGAAGGACTGAACTTGGGTTCCCCACAA
GCCTGGGGCTCCTCTCTACCTGCTTCACTCAGATGTGCACATTCCAGGCATCTCAAAGGTGGAT
TCTGGACTGGAAAGTGCATCAGGCCATTCTGGAAATGGCCAGCACTTAGCCTACAAAAGCACCT
TGTCCTTCTGTGTGGACTCCCCTACATCCTAAAAAACCTTGACTTGTGCCAAACCCTTCCTGGC
TGTGGAGGAGGCAGTATGGATGCCTGAGCTGAGCTTAGGGGTCACACGGCATGCCCTTCCTCAC
TGCTGCAGACTTGGGGCCTCTTGCTGCTGGCTCCATCTCGTCACGTGTAGGCCACAGAGGAAGA
GATAGCTCTACCTAAGGAGGCAGGGTCTGGGTGAGCTGAACAGGGTGACTCCTGGTCCAAAGGA
CCCACAGAGAGGAGATACACTGATCTCTACACAGCCCTCATCTGTCCACCCTAGGATGGGAACC
CTGGCTCATGACCCTGGAATCTGACACAGGAGGGGTCAGGCTGAAGATCAACATGTATGGTTGC
AGAAAAAGGCTGGCGCGAGGCAGCAAGGACAAGGTCACAGGTTCCCTGCCAGCATCTTAAGGCA
GGTGTAGCTGTAGCAAGATGGGCTGAGCATGGGTATTGGGCTCCAGGCCTTGGCTGGACACTAG
ATCTGTTTGCTGAAGCCTCTTTTGAAAAGTTCATTCTCAGCTTTTTTTTTTTTTTTTTTTTTTT
TTTTTGTCCCCACTTGTCCTGGAGCCTTGTCCTTATGCATTTATCTTGGGACCAAAACCTCCCT
CCCCCAGGCCTGCCTGCTCCAGAGGTTCTTCCAGCTCGCCCTCTGTGCTGGCTGTCCCCATGGC
CTCAGTACCCCTCGTAGGTGTGTTTTGTGTGTGGAGTGATTTCTGCCATGCTCCAATACACCCT
GAGCCCAGGTGAGCTGAGGGGGCAACTCCTTTGGATTTGCTGTGACAGATGGTCCTTGTGGCCC
ACAGTGATGGTGGCTGAGCGTCTTGAGCCATGCTGTTAAACCCTGTTTTGACTTCATAAAAATC
CATAAGGGAAGCTTTCTGTGAATGCAAATGTCCCTATTTGCTGAGGCTAGGGGACAGAAAGAGG
CCTGGAGGAAAGGGGGCAAATTACCTCTCGTTGGGTGTGGTTTTTCCAGCAGTCAGGGCAAATC
TACAGCAGGCTCTCCAGCTCTGATGTTCCTGGCCAACTCTCCTCTGATAACTTTTAAACATTCC
CTGAAGGATGCTCTTCCATCTCTGGAAAGCAATTTGGGAGTACAGGAACCAAAAGTCCAAGATG
CCAAATGGCCACCGAACCAAGATGTCTGCACTCTGTCTCATTTCCTAATTGTGGCTGTCTTATG
AAAGTCTCTGGTCTGGGGAAGGGTGGGGCACTGAGGAGAGGGGCCAGTGGGAGGCAGGTCCATG
CTAAGCTTCCAGCCTTGGGCAGGTATGAGTGAGGCTCAACACGTATGCCTCAGCATACCTAGGG
ACTTCAGACTTTTTAACCTCAGAAAATGTCTCAATGTATGTGATTTATGTCATACTAACGGGCT
GTGGGCAATAAACATGAATTTAAAACACA

hide sequence

RefSeq Acc Id:

XM_036152414 ⟹ XP_036008307

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	85,190,031 - 85,310,488 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_848754	(Get FASTA)	NCBI Sequence Viewer
	XP_006506879	(Get FASTA)	NCBI Sequence Viewer
	XP_030111544	(Get FASTA)	NCBI Sequence Viewer
	XP_036008307	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAK39432	(Get FASTA)	NCBI Sequence Viewer
	BAC29372	(Get FASTA)	NCBI Sequence Viewer
	BAC31624	(Get FASTA)	NCBI Sequence Viewer
	BAC38403	(Get FASTA)	NCBI Sequence Viewer
	EDK99123	(Get FASTA)	NCBI Sequence Viewer
	EDK99124	(Get FASTA)	NCBI Sequence Viewer
	Q925N0	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_848754 ⟸ NM_178639

- UniProtKB:

Q925N0 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MADTATTASAASAAASAPNASTDAPPFQLGKPRFQQTSFYGRFRHFLDIIDPRTLFVTEKRLRE
AVQLLEDYKHGTLRPGVTNEQLWSAQKIKQAILHPDTNEKIFMPFRMSGYIPFGTPIVVGLLLP
NQTLASTVFWQWLNQSHNACVNYANRNATKPSPASKFIQGYLGAVISAVSIAVGLNVLVQKANK
FTPATRLLVQRFVPFPAVASANICNVVLMRYGELEEGIDVLDADGNLVGSSKIAARHALLETAL
TRVVLPMPILVLPPIVMSMLEKTALLQARPRLLLPVHSLVCLAAFGLALPLAISLFPQMSEIET
SQLEPEIARATSSRTVVYNKGL

hide sequence

RefSeq Acc Id:

XP_006506879 ⟸ XM_006506816

- Peptide Label:

isoform X1

- Sequence:

show sequence

MADTATTASAASAAASAPNASTDAPPFQLGKPRFQQTSFYGRFRHFLDIIDPRTLFVTEKRLRE
AVQLLEDYKHGTLRPGVTNEQLWSAQKIKQAILHPDTNEKIFMPFRMSGYIPFGTPIVVGLLLP
NQTLASTVFWQWLNQSHNACVNYANRNATKPSPASKFIQGYLGAVISAVSIAVGLNVLVQKANK
FTPATRLLVQRFVPFPAVGNNRDGGLCRRKEWDARESVSSANICNVVLMRYGELEEGIDVLDAD
GNLVGSSKIAARHALLETALTRVVLPMPILVLPPIVMSMLEKTALLQARPRLLLPVHSLVCLAA
FGLALPLAISLFPQMSEIETSQLEPEIARATSSRTVVYNKGL

hide sequence

RefSeq Acc Id:	XP_030111544 ⟸ XM_030255684
- Peptide Label:	isoform X2

RefSeq Acc Id:

ENSMUSP00000041872 ⟸ ENSMUST00000045846

RefSeq Acc Id:

ENSMUSP00000109418 ⟸ ENSMUST00000113788

RefSeq Acc Id:

ENSMUSP00000109417 ⟸ ENSMUST00000113787

RefSeq Acc Id:

ENSMUSP00000054648 ⟸ ENSMUST00000059034

RefSeq Acc Id:	XP_036008307 ⟸ XM_036152414
- Peptide Label:	isoform X3

Promoters

RGD ID:

6839979

Promoter ID:

MM_KWN:46674

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Brain

Transcripts:

UC009CPL.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	6	85,270,456 - 85,270,956 (-)	MPROMDB

RGD ID:

6839981

Promoter ID:

MM_KWN:46675

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

ENSMUST00000113787

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	6	85,282,971 - 85,283,697 (-)	MPROMDB

RGD ID:

6839980

Promoter ID:

MM_KWN:46676

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

ES_Cell, Kidney, MEF_B4

Transcripts:

ENSMUST00000113788, NM_178639_SFXN5, OTTMUST00000054683, OTTMUST00000054685, OTTMUST00000054688, OTTMUST00000054689, UC009CPK.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	6	85,283,321 - 85,284,137 (-)	MPROMDB

RGD ID:

6890218

Promoter ID:

EPDNEW_M8560

Type:

multiple initiation site

Name:

Sfxn5_1

Description:

Mus musculus sideroflexin 5 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	6	85,333,419 - 85,333,479	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:2137681	AgrOrtholog
Ensembl Genes	ENSMUSG00000033720	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSMUSP00000041872	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUSP00000054648	UniProtKB/TrEMBL
	ENSMUSP00000109417	UniProtKB/TrEMBL
	ENSMUSP00000109418	UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000045846	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUST00000059034	UniProtKB/TrEMBL
	ENSMUST00000113787	UniProtKB/TrEMBL
	ENSMUST00000113788	UniProtKB/TrEMBL
InterPro	Mtc	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:94282	UniProtKB/Swiss-Prot
MGD	MGI:2137681	ENTREZGENE
NCBI Gene	94282	ENTREZGENE
PANTHER	PTHR11153	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Mtc	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Sfxn5	PhenoGen
TIGRFAMs	mtc	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	D3YXH5_MOUSE	UniProtKB/TrEMBL
	D3YXH6_MOUSE	UniProtKB/TrEMBL
	Q8BRQ9_MOUSE	UniProtKB/TrEMBL
	Q925N0	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	Q8BGG3	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)