Clk2 (CDC-like kinase 2) - Rat Genome Database

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Gene: Clk2 (CDC-like kinase 2) Mus musculus
Analyze
Symbol: Clk2
Name: CDC-like kinase 2
RGD ID: 1553389
MGI Page MGI
Description: Enables protein serine/threonine kinase activity and protein tyrosine kinase activity. Involved in negative regulation of gluconeogenesis. Acts upstream of or within response to retinoic acid. Located in nucleus. Is expressed in several structures, including brain; genitourinary system; liver; retina; and thyroid gland. Orthologous to human CLK2 (CDC like kinase 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AU041688; Clk2-Scamp3 protein; dual specificity protein kinase CLK2; Tu52
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39389,072,102 - 89,084,394 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl389,072,102 - 89,084,228 (+)EnsemblGRCm39 Ensembl
GRCm38389,164,795 - 89,177,087 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl389,164,795 - 89,176,921 (+)EnsemblGRCm38mm10GRCm38
MGSCv37388,968,727 - 88,981,009 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36389,251,010 - 89,262,516 (+)NCBIMGSCv36mm8
Celera389,198,450 - 89,210,762 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.01NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nuclear body  (ISO)
nucleoplasm  (ISO)
nucleus  (IBA,IDA,ISO)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Characterization and comparison of four serine- and arginine-rich (SR) protein kinases. Nayler O, etal., Biochem J 1997 Sep 15;326 ( Pt 3):693-700.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:9671816   PMID:9852100   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15226823  
PMID:15782199   PMID:15782207   PMID:16141072   PMID:16141073   PMID:16183747   PMID:17967808   PMID:18400104   PMID:18799693   PMID:20074525   PMID:21267068   PMID:21329884   PMID:21677750  
PMID:21873635   PMID:21949414   PMID:23376537   PMID:24458359   PMID:26847545   PMID:28089567   PMID:29575149   PMID:30196744   PMID:37635967  


Genomics

Comparative Map Data
Clk2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39389,072,102 - 89,084,394 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl389,072,102 - 89,084,228 (+)EnsemblGRCm39 Ensembl
GRCm38389,164,795 - 89,177,087 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl389,164,795 - 89,176,921 (+)EnsemblGRCm38mm10GRCm38
MGSCv37388,968,727 - 88,981,009 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36389,251,010 - 89,262,516 (+)NCBIMGSCv36mm8
Celera389,198,450 - 89,210,762 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.01NCBI
CLK2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381155,262,868 - 155,273,504 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1155,262,868 - 155,278,491 (-)EnsemblGRCh38hg38GRCh38
GRCh371155,232,659 - 155,243,295 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361153,499,283 - 153,509,905 (-)NCBINCBI36Build 36hg18NCBI36
Build 341152,045,732 - 152,056,354NCBI
Celera1128,305,910 - 128,316,453 (-)NCBICelera
Cytogenetic Map1q22NCBI
HuRef1126,594,941 - 126,605,589 (-)NCBIHuRef
CHM1_11156,628,098 - 156,638,722 (-)NCBICHM1_1
T2T-CHM13v2.01154,401,428 - 154,412,064 (-)NCBIT2T-CHM13v2.0
Clk2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82176,868,423 - 176,880,412 (+)NCBIGRCr8
mRatBN7.22174,570,614 - 174,582,645 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2174,570,653 - 174,588,985 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2181,716,677 - 181,728,614 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02179,739,050 - 179,750,987 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02174,338,924 - 174,350,859 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02188,476,789 - 188,488,809 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2188,476,820 - 188,496,191 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02207,895,502 - 207,905,134 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42181,244,665 - 181,257,364 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12181,199,649 - 181,207,469 (+)NCBI
Celera2168,513,358 - 168,525,076 (+)NCBICelera
Cytogenetic Map2q34NCBI
Clk2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555451,716,294 - 1,725,185 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555451,716,294 - 1,727,187 (-)NCBIChiLan1.0ChiLan1.0
CLK2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2194,570,716 - 94,581,130 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1194,301,873 - 94,312,460 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01130,607,877 - 130,618,461 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11134,213,237 - 134,223,842 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1134,213,237 - 134,221,288 (-)Ensemblpanpan1.1panPan2
CLK2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1742,284,869 - 42,294,434 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl742,284,699 - 42,294,394 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha741,775,618 - 41,785,257 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0742,153,896 - 42,163,570 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl742,154,826 - 42,163,523 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1741,933,749 - 41,943,406 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0741,987,720 - 41,997,319 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0742,271,531 - 42,281,194 (+)NCBIUU_Cfam_GSD_1.0
Clk2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505825,715,900 - 25,727,832 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365804,746,276 - 4,756,230 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365804,746,276 - 4,758,236 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLK2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl494,560,579 - 94,570,082 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1494,558,220 - 94,570,084 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24103,340,518 - 103,352,217 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CLK2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1208,562,334 - 8,578,880 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660387,903,697 - 7,914,290 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Clk2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248852,284,953 - 2,296,735 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248852,285,116 - 2,295,959 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Clk2
290 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1955
Count of miRNA genes:643
Interacting mature miRNAs:816
Transcripts:ENSMUST00000090927, ENSMUST00000121212, ENSMUST00000121931, ENSMUST00000128318, ENSMUST00000132830, ENSMUST00000133323, ENSMUST00000138822, ENSMUST00000139221, ENSMUST00000148265, ENSMUST00000152205, ENSMUST00000153255
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)343954435101607316Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)351907421102307316Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
11039519Ltpr3_mLeishmania tropica response 3 (mouse)356704102100464137Mouse
12880419V125Dq4_mvitamin D active form serum level QTL 4 (mouse)35890730792907307Mouse
4141294Bmd24_mbone mineral density 24 (mouse)Not determined36174006195740241Mouse
1301971Cia5_mcollagen induced arthritis QTL 5 (mouse)Not determined366046658100046795Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
11251721Ewc3_methanol withdrawal and consumption 3 (mouse)369568554103568554Mouse
1301791Char4_mP. chabaudi malaria resistance QTL 4 (mouse)Not determined369625509100655290Mouse
1301422Sle11_msystematic lupus erythematosus susceptibility 11 (mouse)Not determined370208904104209042Mouse
11049572Lmr11c_mleishmaniasis resistance 11c (mouse)372139967106140094Mouse
1300982Lmr11_mleishmaniasis resistance 11 (mouse)Not determined372139967106140094Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375463302109463549Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381084652115084797Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
10043981Cia5a_mcollagen induced arthritis QTL 5a (mouse)Not determined38717045489140094Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse

Markers in Region
AU041688  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38389,176,609 - 89,176,765UniSTSGRCm38
MGSCv37388,980,531 - 88,980,687UniSTSGRCm37
Celera389,210,285 - 89,210,441UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map3F2UniSTS
Whitehead/MRC_RH3900.93UniSTS
Clk2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3F1UniSTS
cM Map3 UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000090927   ⟹   ENSMUSP00000088445
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl389,072,125 - 89,084,228 (+)Ensembl
GRCm38.p6 Ensembl389,164,818 - 89,176,921 (+)Ensembl
RefSeq Acc Id: ENSMUST00000121212   ⟹   ENSMUSP00000113390
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl389,072,102 - 89,084,228 (+)Ensembl
GRCm38.p6 Ensembl389,164,795 - 89,176,921 (+)Ensembl
RefSeq Acc Id: ENSMUST00000121931   ⟹   ENSMUSP00000113861
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl389,072,147 - 89,084,228 (+)Ensembl
GRCm38.p6 Ensembl389,164,840 - 89,176,921 (+)Ensembl
RefSeq Acc Id: ENSMUST00000128318   ⟹   ENSMUSP00000115761
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl389,072,286 - 89,084,228 (+)Ensembl
GRCm38.p6 Ensembl389,164,979 - 89,176,921 (+)Ensembl
RefSeq Acc Id: ENSMUST00000132830
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl389,081,262 - 89,083,054 (+)Ensembl
GRCm38.p6 Ensembl389,173,955 - 89,175,747 (+)Ensembl
RefSeq Acc Id: ENSMUST00000133323
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl389,074,471 - 89,077,716 (+)Ensembl
GRCm38.p6 Ensembl389,167,164 - 89,170,409 (+)Ensembl
RefSeq Acc Id: ENSMUST00000138822
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl389,072,126 - 89,084,226 (+)Ensembl
GRCm38.p6 Ensembl389,164,819 - 89,176,919 (+)Ensembl
RefSeq Acc Id: ENSMUST00000139221
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl389,082,342 - 89,083,278 (+)Ensembl
GRCm38.p6 Ensembl389,175,035 - 89,175,971 (+)Ensembl
RefSeq Acc Id: ENSMUST00000148265   ⟹   ENSMUSP00000122634
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl389,072,126 - 89,080,764 (+)Ensembl
GRCm38.p6 Ensembl389,164,819 - 89,173,457 (+)Ensembl
RefSeq Acc Id: ENSMUST00000152205   ⟹   ENSMUSP00000122202
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl389,072,124 - 89,074,511 (+)Ensembl
GRCm38.p6 Ensembl389,164,817 - 89,167,204 (+)Ensembl
RefSeq Acc Id: ENSMUST00000153255
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl389,079,472 - 89,083,387 (+)Ensembl
GRCm38.p6 Ensembl389,172,165 - 89,176,080 (+)Ensembl
RefSeq Acc Id: NM_001163432   ⟹   NP_001156904
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39389,072,102 - 89,084,394 (+)NCBI
GRCm38389,164,795 - 89,177,087 (+)NCBI
MGSCv37388,968,727 - 88,981,009 (+)RGD
Celera389,198,450 - 89,210,762 (+)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_007712   ⟹   NP_031738
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39389,072,102 - 89,084,394 (+)NCBI
GRCm38389,164,795 - 89,177,087 (+)NCBI
MGSCv37388,968,727 - 88,981,009 (+)RGD
Celera389,198,450 - 89,210,762 (+)RGD
cM Map3 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_031738   ⟸   NM_007712
- Peptide Label: isoform 1
- UniProtKB: E9Q721 (UniProtKB/Swiss-Prot),   O35491 (UniProtKB/Swiss-Prot),   E9Q5Y1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001156904   ⟸   NM_001163432
- Peptide Label: isoform 2
- UniProtKB: F8WHX0 (UniProtKB/TrEMBL),   E9Q5Y1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000088445   ⟸   ENSMUST00000090927
RefSeq Acc Id: ENSMUSP00000122202   ⟸   ENSMUST00000152205
RefSeq Acc Id: ENSMUSP00000113390   ⟸   ENSMUST00000121212
RefSeq Acc Id: ENSMUSP00000122634   ⟸   ENSMUST00000148265
RefSeq Acc Id: ENSMUSP00000115761   ⟸   ENSMUST00000128318
RefSeq Acc Id: ENSMUSP00000113861   ⟸   ENSMUST00000121931
Protein Domains
Protein kinase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O35491-F1-model_v2 AlphaFold O35491 1-499 view protein structure

Promoters
RGD ID:6833582
Promoter ID:MM_KWN:34912
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000121931,   NM_001163432,   OTTMUST00000073796,   OTTMUST00000073799,   OTTMUST00000073800,   OTTMUST00000073802,   OTTMUST00000073803
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36388,968,476 - 88,969,017 (+)MPROMDB
RGD ID:6833584
Promoter ID:MM_KWN:34913
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   MEF_B6,   Spleen
Transcripts:OTTMUST00000073804
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36388,970,146 - 88,971,032 (+)MPROMDB
RGD ID:6833585
Promoter ID:MM_KWN:34914
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Liver,   Spleen
Transcripts:OTTMUST00000073801,   OTTMUST00000073805
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36388,977,254 - 88,977,754 (+)MPROMDB
RGD ID:6833583
Promoter ID:MM_KWN:34915
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   MEF_B6,   Spleen
Transcripts:OTTMUST00000073806
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36388,978,356 - 88,979,357 (+)MPROMDB
RGD ID:6881206
Promoter ID:EPDNEW_M4054
Type:initiation region
Name:Clk2_1
Description:Mus musculus CDC-like kinase 2 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38389,164,803 - 89,164,863EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1098669 AgrOrtholog
Ensembl Genes ENSMUSG00000068917 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000090927 ENTREZGENE
  ENSMUST00000090927.12 UniProtKB/TrEMBL
  ENSMUST00000121212 ENTREZGENE
  ENSMUST00000121212.9 UniProtKB/Swiss-Prot
  ENSMUST00000121931.8 UniProtKB/TrEMBL
  ENSMUST00000128318.8 UniProtKB/TrEMBL
  ENSMUST00000148265.8 UniProtKB/TrEMBL
  ENSMUST00000152205.5 UniProtKB/TrEMBL
Gene3D-CATH Transferase(Phosphotransferase) domain 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Kinase-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12748 UniProtKB/Swiss-Prot
MGD MGI:1098669 ENTREZGENE
NCBI Gene 12748 ENTREZGENE
PANTHER DUAL SPECIFICITY PROTEIN KINASE CLK2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SERINE/THREONINE-PROTEIN KINASE DOA-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Pkinase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Clk2 PhenoGen
PROSITE PROTEIN_KINASE_ATP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART S_TKc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CLK2_MOUSE UniProtKB/Swiss-Prot
  D3Z4P7_MOUSE UniProtKB/TrEMBL
  D3Z7L4_MOUSE UniProtKB/TrEMBL
  D6RG48_MOUSE UniProtKB/TrEMBL
  E9Q5Y1 ENTREZGENE, UniProtKB/TrEMBL
  E9Q721 ENTREZGENE
  F8WHX0 ENTREZGENE, UniProtKB/TrEMBL
  O35491 ENTREZGENE
  Q3UFP4_MOUSE UniProtKB/TrEMBL
  Q91YR2_MOUSE UniProtKB/TrEMBL
UniProt Secondary E9Q721 UniProtKB/Swiss-Prot