Rab6b (RAB6B, member RAS oncogene family) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Rab6b (RAB6B, member RAS oncogene family) Mus musculus
Analyze
Symbol: Rab6b
Name: RAB6B, member RAS oncogene family
RGD ID: 1553355
MGI Page MGI
Description: Predicted to enable GTPase activity and myosin V binding activity. Predicted to be involved in several processes, including Golgi vesicle transport; protein localization to Golgi membrane; and retrograde transport, endosome to Golgi. Predicted to be located in Golgi membrane. Predicted to be active in Golgi apparatus and presynapse. Is expressed in several structures, including gonad; nasal cavity epithelium; nervous system; neural retina; and spleen. Orthologous to human RAB6B (RAB6B, member RAS oncogene family).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 9630015C03; AI844641; C330006L04Rik; D9Bwg0185e; ras-related protein Rab-6B
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399102,988,866 - 103,062,475 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9102,988,986 - 103,062,475 (+)EnsemblGRCm39 Ensembl
GRCm389103,111,667 - 103,185,276 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9103,111,787 - 103,185,276 (+)EnsemblGRCm38mm10GRCm38
MGSCv379103,014,404 - 103,087,600 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369102,970,224 - 103,043,420 (+)NCBIMGSCv36mm8
Celera9102,662,484 - 102,735,933 (+)NCBICelera
Cytogenetic Map9F1NCBI
cM Map954.88NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (EXP)
1,2-dimethylhydrazine  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
4-hydroxyphenyl retinamide  (EXP)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
cannabidiol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP)
chlorpyrifos  (EXP)
ciguatoxin CTX1B  (EXP)
cisplatin  (ISO)
Cuprizon  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
decabromodiphenyl ether  (ISO)
dibutyl phthalate  (ISO)
diethyl phthalate  (ISO)
diisobutyl phthalate  (ISO)
diisononyl phthalate  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (EXP)
fenvalerate  (ISO)
fipronil  (ISO)
folic acid  (EXP)
furan  (ISO)
gamma-tocopherol  (EXP)
genistein  (EXP)
gentamycin  (ISO)
hydrogen peroxide  (ISO)
hydroquinone O-beta-D-glucopyranoside  (ISO)
kojic acid  (ISO)
lead(0)  (ISO)
methoxychlor  (ISO)
N-nitrosodiethylamine  (EXP)
nickel atom  (ISO)
ozone  (EXP)
paracetamol  (ISO)
paraquat  (ISO)
perfluorohexanesulfonic acid  (EXP)
phenylmercury acetate  (ISO)
potassium dichromate  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium dichromate  (ISO)
sunitinib  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP,ISO)
tocopherol  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (EXP)
triphenyl phosphate  (ISO)
troglitazone  (EXP)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Genetic mapping of 262 loci derived from expressed sequences in a murine interspecific cross using single-strand conformational polymorphism analysis. Brady KP, etal., Genome Res 1997 Nov;7(11):1085-93.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. MGD IEA MGD IEA
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11773082   PMID:11856727   PMID:11929610   PMID:12477932   PMID:12578829   PMID:14610273   PMID:15489334   PMID:15761153  
PMID:16141072   PMID:16141073   PMID:16512683   PMID:16923123   PMID:18799693   PMID:20360680   PMID:20833366   PMID:21267068   PMID:21327095   PMID:21873635   PMID:22794259   PMID:24319055  
PMID:25044020   PMID:29111324   PMID:30068389   PMID:32325033   PMID:32521280   PMID:34321999   PMID:34555867   PMID:35979738   PMID:36417873   PMID:38355793   PMID:38830762  


Genomics

Comparative Map Data
Rab6b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399102,988,866 - 103,062,475 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9102,988,986 - 103,062,475 (+)EnsemblGRCm39 Ensembl
GRCm389103,111,667 - 103,185,276 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9103,111,787 - 103,185,276 (+)EnsemblGRCm38mm10GRCm38
MGSCv379103,014,404 - 103,087,600 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369102,970,224 - 103,043,420 (+)NCBIMGSCv36mm8
Celera9102,662,484 - 102,735,933 (+)NCBICelera
Cytogenetic Map9F1NCBI
cM Map954.88NCBI
RAB6B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383133,824,235 - 133,895,882 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3133,824,235 - 133,895,882 (-)EnsemblGRCh38hg38GRCh38
GRCh373133,543,079 - 133,614,726 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363135,025,769 - 135,097,381 (-)NCBINCBI36Build 36hg18NCBI36
Build 343135,025,784 - 135,097,137NCBI
Celera3131,968,881 - 132,040,477 (-)NCBICelera
Cytogenetic Map3q22.1NCBI
HuRef3130,921,268 - 130,992,822 (-)NCBIHuRef
CHM1_13133,507,024 - 133,578,520 (-)NCBICHM1_1
T2T-CHM13v2.03136,569,430 - 136,641,051 (-)NCBIT2T-CHM13v2.0
Rab6b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88112,574,223 - 112,642,911 (+)NCBIGRCr8
mRatBN7.28103,695,328 - 103,764,023 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8103,695,631 - 103,805,732 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8109,354,470 - 109,423,481 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08107,553,634 - 107,622,649 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08105,396,318 - 105,465,325 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08111,600,375 - 111,668,817 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8111,600,532 - 111,668,808 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08110,991,008 - 111,059,794 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48108,151,061 - 108,192,013 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18108,124,726 - 108,209,832 (+)NCBI
Celera8103,101,314 - 103,142,215 (+)NCBICelera
Cytogenetic Map8q32NCBI
Rab6b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555014,732,616 - 4,781,094 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555014,751,647 - 4,781,094 (+)NCBIChiLan1.0ChiLan1.0
RAB6B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22131,748,402 - 131,820,183 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13131,753,131 - 131,824,912 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03130,869,494 - 130,941,280 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13138,344,807 - 138,416,358 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3138,344,815 - 138,416,358 (-)Ensemblpanpan1.1panPan2
RAB6B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12330,714,723 - 30,754,765 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2330,717,062 - 30,749,188 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2330,693,860 - 30,754,169 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02331,235,166 - 31,295,933 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2331,235,171 - 31,295,965 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12330,931,304 - 30,989,279 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02330,986,735 - 31,047,041 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02331,234,354 - 31,294,724 (-)NCBIUU_Cfam_GSD_1.0
Rab6b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560270,209,010 - 70,271,228 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365296,969,284 - 7,031,918 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365296,969,507 - 7,031,733 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB6B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1375,012,268 - 75,075,239 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11375,012,267 - 75,075,324 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21382,510,690 - 82,573,714 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RAB6B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11556,472,615 - 56,541,083 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1556,472,634 - 56,541,434 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604129,455,217 - 29,523,670 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab6b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473010,133,949 - 10,197,551 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473010,134,215 - 10,197,534 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rab6b
2823 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1873
Count of miRNA genes:714
Interacting mature miRNAs:976
Transcripts:ENSMUST00000035155
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982792386116792481Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979279863113279941Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989440541123440541Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989289476123289595Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986121898120118690Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9101829255124359700Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975682646114303447Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991560372124359700Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982792386116792481Mouse
10412180Msam3_mmuscle, skeletal, activity measure 3 (mouse)Not determined985779563108518385Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976417989110418183Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989162124123162124Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989859058118767089Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974250230108250378Mouse
14746992Manh67_mmandible shape 67 (mouse)993865836124359700Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982792386116792481Mouse
1301573Etohcta8_methanol conditioned taste aversion 8 (mouse)Not determined972859058106859205Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63239711120191934Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986107600120107729Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963239711120191934Mouse
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959897283109089068Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978522698112522808Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993591658124359700Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975682646114303447Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9100889929124359700Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987677199121677199Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996746658124359700Mouse
1301302Pas4_mpulmonary adenoma susceptibility 4 (mouse)Not determined969121898103121973Mouse
1301621Hpic1_mhaloperidol-induced catalepsy 1 (mouse)Not determined969428566103428698Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994863354112701997Mouse
10054068El8_mepilepsy 8 (mouse)Not determined972859058106859205Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991560372124359700Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9101829255124359700Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986625682120625682Mouse
12910773Splic3_mspleen iron content 3 (mouse)991291078124359700Mouse
12910772Lvic6_mliver iron content 6 (mouse)991291078124359700Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991518283124359700Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63239711120191934Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981680321115680445Mouse
12910770Splic1_mspleen iron content 1 (mouse)991291078124359700Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991560372124359700Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991518283124359700Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991518283124359700Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991518283124359700Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984406017118406120Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991518283124359700Mouse
1301484Bwq6_mbody weight (mouse)Not determined993591658124359700Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991518283124359700Mouse

Markers in Region
D9Mit276  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389103,110,764 - 103,110,886UniSTSGRCm38
MGSCv379103,013,094 - 103,013,216UniSTSGRCm37
Celera9102,661,138 - 102,661,260UniSTS
Cytogenetic Map9F1UniSTS
cM Map956.0UniSTS
Whitehead Genetic956.8UniSTS
Whitehead/MRC_RH91052.21UniSTS
RH125121  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389103,185,110 - 103,185,252UniSTSGRCm38
MGSCv379103,087,440 - 103,087,582UniSTSGRCm37
Celera9102,735,773 - 102,735,915UniSTS
Cytogenetic Map9F1UniSTS
cM Map956.0UniSTS
D9Dcr43  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389103,144,422 - 103,144,517UniSTSGRCm38
MGSCv379103,046,752 - 103,046,847UniSTSGRCm37
Celera9102,695,229 - 102,695,324UniSTS
Cytogenetic Map9F1UniSTS
cM Map9 UniSTS
AI844641  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389103,182,806 - 103,182,919UniSTSGRCm38
MGSCv379103,085,136 - 103,085,249UniSTSGRCm37
Celera9102,733,469 - 102,733,582UniSTS
Cytogenetic Map9F1UniSTS
cM Map956.0UniSTS
Whitehead/MRC_RH91056.39UniSTS
D9Bwg0185e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389103,185,093 - 103,185,248UniSTSGRCm38
MGSCv379103,087,423 - 103,087,578UniSTSGRCm37
Celera9102,735,756 - 102,735,911UniSTS
Cytogenetic Map9F1UniSTS
cM Map956.0UniSTS
D9Mgc17  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389103,151,042 - 103,151,359UniSTSGRCm38
MGSCv379103,053,372 - 103,053,689UniSTSGRCm37
Celera9102,701,832 - 102,702,149UniSTS
Cytogenetic Map9F1UniSTS
cM Map956.0UniSTS
D9Mgc18  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389103,169,184 - 103,169,312UniSTSGRCm38
MGSCv379103,071,514 - 103,071,642UniSTSGRCm37
Celera9102,719,846 - 102,719,974UniSTS
Cytogenetic Map9F1UniSTS
cM Map956.0UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000035155   ⟹   ENSMUSP00000035155
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9102,989,006 - 103,062,475 (+)Ensembl
GRCm38.p6 Ensembl9103,111,807 - 103,185,276 (+)Ensembl
Ensembl Acc Id: ENSMUST00000189134   ⟹   ENSMUSP00000149595
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9102,988,986 - 103,039,856 (+)Ensembl
GRCm38.p6 Ensembl9103,111,787 - 103,162,657 (+)Ensembl
RefSeq Acc Id: NM_173781   ⟹   NP_776142
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399102,989,273 - 103,062,469 (+)NCBI
GRCm389103,112,074 - 103,185,270 (+)NCBI
MGSCv379103,014,404 - 103,087,600 (+)RGD
Celera9102,662,484 - 102,735,933 (+)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006511736   ⟹   XP_006511799
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399103,013,355 - 103,062,475 (+)NCBI
GRCm389103,136,139 - 103,185,276 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006511737   ⟹   XP_006511800
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399103,005,117 - 103,062,475 (+)NCBI
GRCm389103,127,918 - 103,185,276 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017313401   ⟹   XP_017168890
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399103,010,792 - 103,019,086 (+)NCBI
GRCm389103,133,593 - 103,141,887 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030244403   ⟹   XP_030100263
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399102,988,866 - 103,019,086 (+)NCBI
GRCm389103,111,667 - 103,141,887 (+)NCBI
Sequence:
RefSeq Acc Id: NP_776142   ⟸   NM_173781
- UniProtKB: P61294 (UniProtKB/Swiss-Prot),   Q0PD53 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006511800   ⟸   XM_006511737
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006511799   ⟸   XM_006511736
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017168890   ⟸   XM_017313401
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_030100263   ⟸   XM_030244403
- Peptide Label: isoform X3
Ensembl Acc Id: ENSMUSP00000035155   ⟸   ENSMUST00000035155
Ensembl Acc Id: ENSMUSP00000149595   ⟸   ENSMUST00000189134

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P61294-F1-model_v2 AlphaFold P61294 1-208 view protein structure

Promoters
RGD ID:6845016
Promoter ID:MM_KWN:58575
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:ENSMUST00000035155
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369103,013,841 - 103,014,341 (+)MPROMDB
RGD ID:6848460
Promoter ID:MM_ACW:51816
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Brain
Transcripts:RAB6B.ESEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369103,083,099 - 103,083,599 (+)MPROMDB
RGD ID:8670626
Promoter ID:EPDNEW_M13344
Type:initiation region
Name:Rab6b_1
Description:Mus musculus RAB6B, member RAS oncogene family , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389103,112,122 - 103,112,182EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:107283 AgrOrtholog
Ensembl Genes ENSMUSG00000032549 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000035155 ENTREZGENE
  ENSMUST00000035155.8 UniProtKB/Swiss-Prot
  ENSMUST00000189134.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rab UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Small_GTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:270192 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:107283 ENTREZGENE
NCBI Gene Rab6b ENTREZGENE
PANTHER RAS-RELATED PROTEIN RAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAS-RELATED PROTEIN RAB-6B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ras UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rab6b PhenoGen
PRINTS RASTRNSFRMNG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE RAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
SMART RAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RHO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1L1SRS6_MOUSE UniProtKB/TrEMBL
  P61294 ENTREZGENE
  Q0PD53 ENTREZGENE, UniProtKB/TrEMBL
  RAB6B_MOUSE UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-26 Rab6b  RAB6B, member RAS oncogene family  D9Bwg0185e  DNA segment, Chr 9, Brigham & Women's Genetics 0185 expressed  Symbol and/or name updated 27372883 PROVISIONAL
2024-08-21 D9Bwg0185e  DNA segment, Chr 9, Brigham & Women's Genetics 0185 expressed  Rab6b  RAB6B, member RAS oncogene family  Symbol and/or name change 5135510 APPROVED