Tnrc6c (trinucleotide repeat containing 6C) - Rat Genome Database

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Gene: Tnrc6c (trinucleotide repeat containing 6C) Mus musculus
Analyze
Symbol: Tnrc6c
Name: trinucleotide repeat containing 6C
RGD ID: 1553306
MGI Page MGI
Description: Predicted to enable RNA binding activity. Acts upstream of or within several processes, including endoderm formation; lung saccule development; and transforming growth factor beta receptor signaling pathway. Predicted to be located in cytosol. Predicted to be active in P-body and nucleoplasm. Is expressed in central nervous system; lung; and sensory organ. Orthologous to human TNRC6C (trinucleotide repeat containing adaptor 6C).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 9930033H14Rik; mKIAA1582; trinucleotide repeat-containing gene 6C protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911117,544,529 - 117,654,265 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11117,545,115 - 117,654,265 (+)EnsemblGRCm39 Ensembl
GRCm3811117,653,703 - 117,763,439 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11117,654,289 - 117,763,439 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711117,515,603 - 117,624,753 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611117,470,379 - 117,579,529 (+)NCBIMGSCv36mm8
Celera11129,397,726 - 129,507,237 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1182.96NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Argonaute proteins at a glance. Ender C and Meister G, J Cell Sci. 2010 Jun 1;123(Pt 11):1819-23.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Prediction of the coding sequences of mouse homologues of KIAA gene: II. The complete nucleotide sequences of 400 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, etal., DNA Res 2003 Feb 28;10(1):35-48.
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:16033648   PMID:16141072   PMID:16141073  
PMID:17967808   PMID:18799693   PMID:19838187   PMID:21267068   PMID:21873635   PMID:22187428   PMID:28811219   PMID:32325033   PMID:32554809   PMID:33378226   PMID:34321999  


Genomics

Comparative Map Data
Tnrc6c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911117,544,529 - 117,654,265 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11117,545,115 - 117,654,265 (+)EnsemblGRCm39 Ensembl
GRCm3811117,653,703 - 117,763,439 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11117,654,289 - 117,763,439 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711117,515,603 - 117,624,753 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611117,470,379 - 117,579,529 (+)NCBIMGSCv36mm8
Celera11129,397,726 - 129,507,237 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1182.96NCBI
TNRC6C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381777,957,557 - 78,108,835 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1777,958,703 - 78,108,822 (+)EnsemblGRCh38hg38GRCh38
GRCh371775,953,639 - 76,104,916 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361773,556,589 - 73,612,616 (+)NCBINCBI36Build 36hg18NCBI36
Build 341773,556,588 - 73,612,616NCBI
Celera1772,596,318 - 72,700,896 (+)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1771,424,371 - 71,528,917 (+)NCBIHuRef
CHM1_11776,065,011 - 76,169,559 (+)NCBICHM1_1
T2T-CHM13v2.01778,851,592 - 79,002,521 (+)NCBIT2T-CHM13v2.0
Tnrc6c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810103,367,498 - 103,478,246 (+)NCBIGRCr8
mRatBN7.210102,908,958 - 102,979,543 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10102,868,828 - 102,978,194 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.010106,698,359 - 106,763,639 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10106,712,127 - 106,762,043 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010106,337,197 - 106,403,097 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410107,829,754 - 107,854,869 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera10101,489,423 - 101,539,688 (+)NCBICelera
Cytogenetic Map10q32.2NCBI
Tnrc6c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555064,440,555 - 4,559,070 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555064,440,555 - 4,579,642 (-)NCBIChiLan1.0ChiLan1.0
TNRC6C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21994,007,592 - 94,157,602 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11798,836,243 - 98,986,328 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01772,035,737 - 72,185,489 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11777,634,111 - 77,738,511 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1777,633,564 - 77,738,511 (+)Ensemblpanpan1.1panPan2
TNRC6C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.193,018,599 - 3,122,664 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl93,020,533 - 3,171,471 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha93,701,674 - 3,805,806 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.093,696,277 - 3,800,626 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl93,698,224 - 3,777,294 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.193,721,379 - 3,823,452 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.093,843,625 - 3,947,774 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.093,925,070 - 4,029,400 (-)NCBIUU_Cfam_GSD_1.0
Tnrc6c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056023,670,705 - 3,761,602 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365942,656,045 - 2,741,233 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365942,656,079 - 2,741,254 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNRC6C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl123,847,901 - 3,935,368 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1123,847,522 - 3,939,054 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TNRC6C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11643,610,595 - 43,718,117 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1643,613,223 - 43,717,852 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607714,328,740 - 14,463,687 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tnrc6c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248017,552,030 - 7,638,834 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248017,552,644 - 7,644,755 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tnrc6c
4256 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2228
Count of miRNA genes:653
Interacting mature miRNAs:788
Transcripts:ENSMUST00000026658, ENSMUST00000106344, ENSMUST00000138299, ENSMUST00000140347, ENSMUST00000141115, ENSMUST00000141287
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185844911119844911Mouse
15039374Adip29_madiposity 29 (mouse)1186608320120608320Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186608320120608320Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186608320120608320Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187490826121873369Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187502600121502698Mouse
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189869251121973369Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191604608121973369Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193229183121973369Mouse
4141939Pregq2_mpregnancy QTL 2 (mouse)Not determined1194063779118022724Mouse
27226731Tibmd4_mtibia midshaft diameter 4, 10 week (mouse)1194190826118890826Mouse
4141465Dbm2_mdiabetes modifier 2 (mouse)Not determined94437183118022724Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195403965121973369Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195403965121973369Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196137674121973369Mouse
1301057Nidd4_mnon-insulin-dependent diabetes mellitus 4 (mouse)Not determined1196810136121973369Mouse
1301983Berr2_mberghei resistance locus 2 (mouse)Not determined1198352609121973369Mouse
10043976Obq33_mobesity QTL 33 (mouse)Not determined1198500469121973369Mouse
10044001Alcw8_malcohol withdrawal 8 (mouse)Not determined1199254187121973369Mouse
11553867Stmm5_mskin tumor modifier of MSM 5 (mouse)11100058103121973369Mouse
11341721Rvfs2_mRift Valley fever susceptibility 2 (mouse)11100254186120887165Mouse
1301012Vispl_mvisual placing (mouse)Not determined11101022590121973369Mouse

Markers in Region
Tnrc6c  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11E2UniSTS
cM Map11 UniSTS
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001395514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001395515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_198022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AI844481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK047249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL645856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL672228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC018495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ099743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ103032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000026658   ⟹   ENSMUSP00000026658
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11117,545,115 - 117,654,263 (+)Ensembl
GRCm38.p6 Ensembl11117,654,289 - 117,763,437 (+)Ensembl
RefSeq Acc Id: ENSMUST00000106344   ⟹   ENSMUSP00000101951
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11117,545,639 - 117,654,265 (+)Ensembl
GRCm38.p6 Ensembl11117,654,813 - 117,763,439 (+)Ensembl
RefSeq Acc Id: ENSMUST00000138299   ⟹   ENSMUSP00000115221
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11117,611,844 - 117,653,090 (+)Ensembl
GRCm38.p6 Ensembl11117,721,018 - 117,762,264 (+)Ensembl
RefSeq Acc Id: ENSMUST00000140347
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11117,633,327 - 117,640,127 (+)Ensembl
GRCm38.p6 Ensembl11117,742,501 - 117,749,301 (+)Ensembl
RefSeq Acc Id: ENSMUST00000141115
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11117,545,399 - 117,654,254 (+)Ensembl
GRCm38.p6 Ensembl11117,654,573 - 117,763,428 (+)Ensembl
RefSeq Acc Id: ENSMUST00000141287
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11117,640,057 - 117,642,134 (+)Ensembl
GRCm38.p6 Ensembl11117,749,231 - 117,751,308 (+)Ensembl
RefSeq Acc Id: NM_001395514   ⟹   NP_001382443
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911117,545,636 - 117,654,256 (+)NCBI
RefSeq Acc Id: NM_001395515   ⟹   NP_001382444
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911117,545,636 - 117,654,256 (+)NCBI
RefSeq Acc Id: NM_198022   ⟹   NP_932139
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911117,545,115 - 117,654,265 (+)NCBI
GRCm3811117,654,289 - 117,763,439 (+)NCBI
MGSCv3711117,515,603 - 117,624,753 (+)RGD
Celera11129,397,726 - 129,507,237 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006533109   ⟹   XP_006533172
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911117,544,529 - 117,654,260 (+)NCBI
GRCm3811117,653,703 - 117,763,434 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006533110   ⟹   XP_006533173
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911117,544,529 - 117,653,454 (+)NCBI
GRCm3811117,653,703 - 117,763,434 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006533111   ⟹   XP_006533174
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911117,544,529 - 117,654,260 (+)NCBI
GRCm3811117,653,703 - 117,763,434 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030245905   ⟹   XP_030101765
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911117,544,529 - 117,654,260 (+)NCBI
GRCm3811117,653,703 - 117,763,434 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030245906   ⟹   XP_030101766
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911117,545,599 - 117,654,256 (+)NCBI
GRCm3811117,654,060 - 117,763,434 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156615   ⟹   XP_036012508
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911117,544,529 - 117,653,411 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156616   ⟹   XP_036012509
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911117,544,529 - 117,654,260 (+)NCBI
Sequence:
RefSeq Acc Id: NP_932139   ⟸   NM_198022
- Peptide Label: isoform 1
- UniProtKB: B1ATC3 (UniProtKB/TrEMBL),   B7ZC94 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006533174   ⟸   XM_006533111
- Peptide Label: isoform X5
- UniProtKB: B7ZC94 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006533172   ⟸   XM_006533109
- Peptide Label: isoform X2
- UniProtKB: B7ZC94 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006533173   ⟸   XM_006533110
- Peptide Label: isoform X4
- UniProtKB: B7ZC94 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030101765   ⟸   XM_030245905
- Peptide Label: isoform X1
- UniProtKB: B7ZC94 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030101766   ⟸   XM_030245906
- Peptide Label: isoform X8
- UniProtKB: Q80TB6 (UniProtKB/Swiss-Prot),   Q3UZ61 (UniProtKB/Swiss-Prot),   Q3UHC0 (UniProtKB/Swiss-Prot),   Q8BXF9 (UniProtKB/Swiss-Prot),   B7ZC94 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000026658   ⟸   ENSMUST00000026658
RefSeq Acc Id: ENSMUSP00000115221   ⟸   ENSMUST00000138299
RefSeq Acc Id: ENSMUSP00000101951   ⟸   ENSMUST00000106344
RefSeq Acc Id: XP_036012509   ⟸   XM_036156616
- Peptide Label: isoform X7
- UniProtKB: B7ZC94 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036012508   ⟸   XM_036156615
- Peptide Label: isoform X6
- UniProtKB: B7ZC94 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001382443   ⟸   NM_001395514
- Peptide Label: isoform 1
- UniProtKB: B1ATC3 (UniProtKB/TrEMBL),   B7ZC94 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001382444   ⟸   NM_001395515
- Peptide Label: isoform 2
- UniProtKB: B7ZC94 (UniProtKB/TrEMBL)
Protein Domains
RRM   UBA

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3UHC0-F1-model_v2 AlphaFold Q3UHC0 1-1690 view protein structure

Promoters
RGD ID:6822363
Promoter ID:MM_KWN:10729
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000106344,   NM_198022,   OTTMUST00000084694
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611117,515,529 - 117,516,029 (+)MPROMDB
RGD ID:6822366
Promoter ID:MM_KWN:10730
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Liver,   Lung,   Spleen
Transcripts:UC007MNK.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611117,581,506 - 117,584,397 (+)MPROMDB
RGD ID:6822365
Promoter ID:MM_KWN:10732
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Spleen
Transcripts:OTTMUST00000084695
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611117,602,639 - 117,603,139 (+)MPROMDB
RGD ID:8677518
Promoter ID:EPDNEW_M16790
Type:multiple initiation site
Name:Tnrc6c_2
Description:Mus musculus trinucleotide repeat containing 6C , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16791  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811117,654,235 - 117,654,295EPDNEW
RGD ID:8677520
Promoter ID:EPDNEW_M16791
Type:multiple initiation site
Name:Tnrc6c_1
Description:Mus musculus trinucleotide repeat containing 6C , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16790  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811117,654,813 - 117,654,873EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2443265 AgrOrtholog
Ensembl Genes ENSMUSG00000025571 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000026658 ENTREZGENE
  ENSMUST00000026658.13 UniProtKB/TrEMBL
  ENSMUST00000106344 ENTREZGENE
  ENSMUST00000106344.8 UniProtKB/TrEMBL
  ENSMUST00000138299 ENTREZGENE
  ENSMUST00000138299.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DNA helicase RuvA subunit, C-terminal domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Argonaute_hook_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GW182_M_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TNR6C_UBA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TNRC6_PABC-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TNRC6C_RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBA-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:217351 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2443265 ENTREZGENE
NCBI Gene 217351 ENTREZGENE
PANTHER PTHR13020:SF9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRINUCLEOTIDE REPEAT-CONTAINING GENE 6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ago_hook UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  M_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TNRC6-PABC_bdg UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tnrc6c PhenoGen
PROSITE UBA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART UBA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46934 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54928 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B1ATC3 ENTREZGENE, UniProtKB/TrEMBL
  B7ZC94 ENTREZGENE, UniProtKB/TrEMBL
  Q3UHC0 ENTREZGENE
  Q3UZ61 ENTREZGENE
  Q80TB6 ENTREZGENE
  Q8BXF9 ENTREZGENE
  TNR6C_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q3UZ61 UniProtKB/Swiss-Prot
  Q80TB6 UniProtKB/Swiss-Prot
  Q8BXF9 UniProtKB/Swiss-Prot