Dmrt1 (doublesex and mab-3 related transcription factor 1) - Rat Genome Database

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Gene: Dmrt1 (doublesex and mab-3 related transcription factor 1) Mus musculus
Analyze
Symbol: Dmrt1
Name: doublesex and mab-3 related transcription factor 1
RGD ID: 1553207
MGI Page MGI
Description: Enables several functions, including DNA-binding transcription activator activity, RNA polymerase II-specific; identical protein binding activity; and transcription cis-regulatory region binding activity. Involved in several processes, including male germ cell proliferation; regulation of nuclear division; and regulation of transcription by RNA polymerase II. Acts upstream of or within several processes, including Sertoli cell development; positive regulation of male gonad development; and positive regulation of meiosis I. Located in cytoplasm and female germ cell nucleus. Is expressed in several structures, including early conceptus; gonad; gonad primordium; and mesonephros. Orthologous to human DMRT1 (doublesex and mab-3 related transcription factor 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: doublesex- and mab-3-related transcription factor 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391925,483,070 - 25,581,692 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1925,482,982 - 25,581,693 (+)EnsemblGRCm39 Ensembl
GRCm381925,505,618 - 25,604,328 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1925,505,618 - 25,604,329 (+)EnsemblGRCm38mm10GRCm38
MGSCv371925,580,196 - 25,678,818 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361925,572,803 - 25,670,807 (+)NCBIMGSCv36mm8
Celera1926,298,798 - 26,398,802 (+)NCBICelera
Cytogenetic Map19BNCBI
cM Map1920.45NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IDA)
female germ cell nucleus  (IDA)
nucleoplasm  (TAS)
nucleus  (IBA,IDA,ISO)

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Dmrt1 expression is regulated by follicle-stimulating hormone and phorbol esters in postnatal Sertoli cells. Chen JK and Heckert LL, Endocrinology 2001 Mar;142(3):1167-78.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10545231   PMID:10604464   PMID:10640721   PMID:10860811   PMID:10894941   PMID:11040213   PMID:11543627   PMID:11990787   PMID:12225764   PMID:12360237   PMID:12434333   PMID:12477932  
PMID:12520002   PMID:12904583   PMID:14610273   PMID:14681479   PMID:15533830   PMID:15618518   PMID:16720339   PMID:16825170   PMID:17141192   PMID:17540358   PMID:17567962   PMID:17605809  
PMID:17720152   PMID:17803355   PMID:18287559   PMID:18391511   PMID:18391515   PMID:18799693   PMID:19538736   PMID:20007774   PMID:20059953   PMID:20412781   PMID:20616082   PMID:20816665  
PMID:20951351   PMID:21267068   PMID:21385577   PMID:21621532   PMID:21775990   PMID:21873635   PMID:22837482   PMID:22932389   PMID:23229519   PMID:23255335   PMID:23287039   PMID:23300469  
PMID:23401851   PMID:23473982   PMID:24029916   PMID:24036309   PMID:24856513   PMID:25142465   PMID:25668066   PMID:25683803   PMID:25725066   PMID:25775596   PMID:26108792   PMID:26120033  
PMID:27068105   PMID:27099200   PMID:27328324   PMID:27583450   PMID:28091399   PMID:28472341   PMID:28637242   PMID:28900034   PMID:28982686   PMID:31491745   PMID:31712577   PMID:32365547  
PMID:32450947   PMID:32493750   PMID:32852840   PMID:33200378   PMID:33707608   PMID:34321664   PMID:34413299   PMID:34515237   PMID:35084365   PMID:35337816   PMID:35840551   PMID:35906245  
PMID:36200842   PMID:36362374   PMID:36543770   PMID:36922518   PMID:37039821   PMID:37070575   PMID:37081156   PMID:38690712   PMID:39432160  


Genomics

Comparative Map Data
Dmrt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391925,483,070 - 25,581,692 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1925,482,982 - 25,581,693 (+)EnsemblGRCm39 Ensembl
GRCm381925,505,618 - 25,604,328 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1925,505,618 - 25,604,329 (+)EnsemblGRCm38mm10GRCm38
MGSCv371925,580,196 - 25,678,818 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361925,572,803 - 25,670,807 (+)NCBIMGSCv36mm8
Celera1926,298,798 - 26,398,802 (+)NCBICelera
Cytogenetic Map19BNCBI
cM Map1920.45NCBI
DMRT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389841,697 - 969,090 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9841,690 - 969,090 (+)EnsemblGRCh38hg38GRCh38
GRCh379841,697 - 969,090 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369831,690 - 959,090 (+)NCBINCBI36Build 36hg18NCBI36
Build 349831,689 - 959,088NCBI
Celera9759,599 - 886,997 (+)NCBICelera
Cytogenetic Map9p24.3NCBI
HuRef9793,422 - 921,841 (+)NCBIHuRef
CHM1_19841,466 - 969,267 (+)NCBICHM1_1
T2T-CHM13v2.09842,204 - 970,359 (+)NCBIT2T-CHM13v2.0
Dmrt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81232,569,179 - 232,667,646 (+)NCBIGRCr8
mRatBN7.21223,142,859 - 223,241,333 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1223,142,859 - 223,241,333 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1231,590,464 - 231,688,921 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01238,520,554 - 238,619,013 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01231,341,321 - 231,439,787 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01243,477,403 - 243,582,629 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1243,477,493 - 243,582,629 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01250,737,532 - 250,841,372 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41228,936,606 - 229,036,885 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11229,100,628 - 229,200,905 (+)NCBI
Celera1220,344,915 - 220,443,789 (+)NCBICelera
Cytogenetic Map1q51NCBI
Dmrt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554345,341,286 - 5,448,235 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554345,341,519 - 5,448,049 (+)NCBIChiLan1.0ChiLan1.0
DMRT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v211123,611,612 - 123,742,310 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan19123,617,555 - 123,748,253 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09650,678 - 778,519 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19844,366 - 972,656 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9844,366 - 972,656 (+)Ensemblpanpan1.1panPan2
DMRT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1189,677,554 - 89,790,692 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl189,677,533 - 89,790,145 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha190,147,163 - 90,258,242 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0190,227,674 - 90,339,078 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl190,227,652 - 90,338,531 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1189,873,499 - 89,986,835 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0189,586,159 - 89,697,497 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0190,353,294 - 90,466,711 (+)NCBIUU_Cfam_GSD_1.0
Dmrt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947137,123,846 - 137,229,034 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365033,944,933 - 4,049,132 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365033,944,941 - 4,049,132 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DMRT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1220,841,488 - 220,953,442 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11220,841,485 - 220,953,442 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21247,099,311 - 247,104,375 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DMRT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11278,551,312 - 78,679,517 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603866,932,184 - 67,066,724 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dmrt1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247365,525,408 - 5,645,636 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247365,525,417 - 5,641,612 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dmrt1
4201 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:491
Count of miRNA genes:325
Interacting mature miRNAs:373
Transcripts:ENSMUST00000025755, ENSMUST00000087525, ENSMUST00000160814
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301271Datd_mdopamine transporter density (mouse)Not determined19132340234Mouse
10412251Mnp_mmodifier of Niemann Pick type C1 (mouse)Not determined192023431454234461Mouse
1357596Tgct3_mtesticular germ cell tumor 3 (mouse)Not determined192198409132912719Mouse
11039522Tbbr4_mTrypanosoma brucei brucei response 4 (mouse)19531332639313470Mouse
1301336Alcp23_malcohol preference locus 23 (mouse)Not determined191591260749912719Mouse
1558876W3q14_mweight 3 weeks QTL 14 (mouse)Not determined192231332653911504Mouse
1302019Pgia23_mproteoglycan induced arthritis 23 (mouse)Not determined19978745343787602Mouse
1301633Alcp24_malcohol preference locus 24 (mouse)Not determined191591260749912719Mouse
14928311Manh85_mmandible shape 85 (mouse)191191478945914789Mouse
1301451Ath16_matherosclerosis 16 (mouse)Not determined192542691759427005Mouse
4141659Pbwg20_mpostnatal body weight growth 20 (mouse)Not determined192137870555378928Mouse
10413881Moe2_mmodifier of epilepsy 2 (mouse)191492301648923138Mouse
1302004Lfp2_mlong free running period 2 (mouse)Not determined191829516252295381Mouse
1300923Bits4_mbitterness sensitivity 4 (mouse)Not determined19332321637323348Mouse
12790634Ebm1_mEpidermolysis Bullosa modifier 1 (mouse)192498843958988439Mouse
4142343Moen2_mmodifier of engrailed QTL 2 (mouse)Not determined192023431454234461Mouse
1302123Tlsr8_mthymic lymphoma suppressor region 8 (mouse)Not determined192513600242388916Mouse
4142406Pbctlp1_mperipheral blood cytotoxic T lymphocyte percentage 1 (mouse)Not determined132875174Mouse
1300904Chab5_mcholesterol absorption 5 (mouse)Not determined19165376435653927Mouse
26884385Skwq14_mskull length QTL 14, 16 week (mouse)19325000035877400Mouse
1301800Faq10_mfluctuating asymmetry QTL 10 (mouse)Not determined19332321637323348Mouse
1300591Pas3_mpulmonary adenoma susceptibility 3 (mouse)Not determined19332321637323348Mouse
1302063Eae19_mexperimental allergic encephalomyelitis 19 (mouse)Not determined191829516252295381Mouse
1302126Skull26_mskull morphology 26 (mouse)Not determined19332321637323348Mouse
1301228Iba4_minduction of brown adipocytes 4 (mouse)Not determined19930571543305821Mouse

Markers in Region
Dmrt1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371925,620,341 - 25,620,490UniSTSGRCm37
MGSCv371725,967,624 - 25,967,780UniSTSGRCm37
Celera1926,340,144 - 26,340,293UniSTS
Celera1726,363,502 - 26,363,658UniSTS
Cytogenetic Map19C2-C3UniSTS
cM Map19 UniSTS
Dmrt1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381925,545,851 - 25,546,000UniSTSGRCm38
MGSCv371925,620,341 - 25,620,490UniSTSGRCm37
Celera1926,340,144 - 26,340,293UniSTS
Cytogenetic Map19C2-C3UniSTS
Dmrt1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map19C2-C3UniSTS
Dmrt1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map19C2-C3UniSTS
Dmrt1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381725,830,679 - 25,830,835UniSTSGRCm38
MGSCv371725,967,624 - 25,967,780UniSTSGRCm37
Celera1726,363,502 - 26,363,658UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map19C2-C3UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000025755   ⟹   ENSMUSP00000025755
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1925,482,982 - 25,581,693 (+)Ensembl
GRCm38.p6 Ensembl1925,505,618 - 25,604,329 (+)Ensembl
Ensembl Acc Id: ENSMUST00000087525   ⟹   ENSMUSP00000084803
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1925,483,070 - 25,580,855 (+)Ensembl
GRCm38.p6 Ensembl1925,505,706 - 25,603,491 (+)Ensembl
Ensembl Acc Id: ENSMUST00000160814
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1925,483,071 - 25,537,629 (+)Ensembl
GRCm38.p6 Ensembl1925,505,707 - 25,560,265 (+)Ensembl
RefSeq Acc Id: NM_015826   ⟹   NP_056641
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391925,483,070 - 25,581,692 (+)NCBI
GRCm381925,505,706 - 25,604,328 (+)NCBI
MGSCv371925,580,196 - 25,678,818 (+)RGD
Celera1926,298,798 - 26,398,802 (+)RGD
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_056641   ⟸   NM_015826
- UniProtKB: Q9QZ37 (UniProtKB/Swiss-Prot),   Q6Y953 (UniProtKB/Swiss-Prot),   Q6Y951 (UniProtKB/Swiss-Prot),   Q2TDQ9 (UniProtKB/Swiss-Prot),   Q19AV2 (UniProtKB/Swiss-Prot),   Q9QZA4 (UniProtKB/Swiss-Prot),   Q9QZ59 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000084803   ⟸   ENSMUST00000087525
Ensembl Acc Id: ENSMUSP00000025755   ⟸   ENSMUST00000025755

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9QZ59-F1-model_v2 AlphaFold Q9QZ59 1-374 view protein structure

Promoters
RGD ID:13679156
Promoter ID:EPDNEW_M23727
Type:initiation region
Name:Dmrt1_1
Description:Mus musculus doublesex and mab-3 related transcription factor1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381925,505,761 - 25,505,821EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1354733 AgrOrtholog
Ensembl Genes ENSMUSG00000024837 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000025755 ENTREZGENE
  ENSMUST00000025755.11 UniProtKB/Swiss-Prot
  ENSMUST00000087525.5 UniProtKB/Swiss-Prot
Gene3D-CATH 4.10.1040.10 UniProtKB/Swiss-Prot
InterPro DM_DNA-bd UniProtKB/Swiss-Prot
  DM_DNA-bd_sf UniProtKB/Swiss-Prot
  DMRT/dsx/mab-3 UniProtKB/Swiss-Prot
  DMRT1-like UniProtKB/Swiss-Prot
KEGG Report mmu:50796 UniProtKB/Swiss-Prot
MGD MGI:1354733 ENTREZGENE
NCBI Gene 50796 ENTREZGENE
PANTHER DOUBLESEX- AND MAB-3-RELATED TRANSCRIPTION FACTOR 1 UniProtKB/Swiss-Prot
  PTHR12322 UniProtKB/Swiss-Prot
Pfam Dmrt1 UniProtKB/Swiss-Prot
  PF00751 UniProtKB/Swiss-Prot
PhenoGen Dmrt1 PhenoGen
PROSITE DM_1 UniProtKB/Swiss-Prot
  DM_2 UniProtKB/Swiss-Prot
SMART SM00301 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF82927 UniProtKB/Swiss-Prot
UniProt DMRT1_MOUSE UniProtKB/Swiss-Prot
  Q19AV2 ENTREZGENE
  Q2TDQ9 ENTREZGENE
  Q6Y951 ENTREZGENE
  Q6Y953 ENTREZGENE
  Q9QZ37 ENTREZGENE
  Q9QZ59 ENTREZGENE
  Q9QZA4 ENTREZGENE
UniProt Secondary Q19AV2 UniProtKB/Swiss-Prot
  Q2TDQ9 UniProtKB/Swiss-Prot
  Q6Y951 UniProtKB/Swiss-Prot
  Q6Y953 UniProtKB/Swiss-Prot
  Q9QZ37 UniProtKB/Swiss-Prot
  Q9QZA4 UniProtKB/Swiss-Prot