Cenpc1 (centromere protein C1) - Rat Genome Database

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Gene: Cenpc1 (centromere protein C1) Mus musculus
Analyze
Symbol: Cenpc1
Name: centromere protein C1
RGD ID: 1553164
MGI Page MGI
Description: Predicted to enable centromeric DNA binding activity and identical protein binding activity. Predicted to be involved in attachment of mitotic spindle microtubules to kinetochore; kinetochore assembly; and monopolar spindle attachment to meiosis I kinetochore. Predicted to act upstream of or within cell division. Located in condensed chromosome, centromeric region and pericentric heterochromatin. Human ortholog(s) of this gene implicated in CREST syndrome and liver cirrhosis. Orthologous to human CENPC (centromere protein C).
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: CENP-C; CENP-C 1; Cenpc; centromere autoantigen C1; centromere protein C; CENTROMERE PROTEIN C (CENP-C) (CENTROMERE AUTOANTIGEN C); centromere protein C 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Cenpc-ps1   Gm13477  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39586,159,877 - 86,214,325 (-)NCBIGRCm39mm39
GRCm39 Ensembl586,159,883 - 86,213,442 (-)Ensembl
GRCm38586,012,018 - 86,065,962 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl586,012,024 - 86,065,583 (-)EnsemblGRCm38mm10GRCm38
MGSCv37586,441,049 - 86,494,608 (-)NCBIGRCm37mm9NCBIm37
MGSCv36587,086,585 - 87,140,032 (-)NCBImm8
Celera583,243,963 - 83,297,482 (-)NCBICelera
Cytogenetic Map5E1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:7959789   PMID:8893808   PMID:9448298   PMID:9605877   PMID:9925740   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273  
PMID:15242786   PMID:16141072   PMID:16141073   PMID:17154719   PMID:17218262   PMID:21751032   PMID:21854982   PMID:21873635   PMID:22540025   PMID:22826121   PMID:25533956   PMID:28125646  
PMID:32232159   PMID:33961623  


Genomics

Comparative Map Data
Cenpc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39586,159,877 - 86,214,325 (-)NCBIGRCm39mm39
GRCm39 Ensembl586,159,883 - 86,213,442 (-)Ensembl
GRCm38586,012,018 - 86,065,962 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl586,012,024 - 86,065,583 (-)EnsemblGRCm38mm10GRCm38
MGSCv37586,441,049 - 86,494,608 (-)NCBIGRCm37mm9NCBIm37
MGSCv36587,086,585 - 87,140,032 (-)NCBImm8
Celera583,243,963 - 83,297,482 (-)NCBICelera
Cytogenetic Map5E1NCBI
CENPC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl467,468,762 - 67,545,503 (-)EnsemblGRCh38hg38GRCh38
GRCh38467,468,762 - 67,545,503 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37468,334,480 - 68,411,221 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36468,020,584 - 68,093,851 (-)NCBINCBI36hg18NCBI36
Build 34468,166,961 - 68,239,995NCBI
Celera465,800,619 - 65,873,659 (-)NCBI
Cytogenetic Map4q13.2NCBI
HuRef464,251,196 - 64,324,430 (-)NCBIHuRef
CHM1_1468,375,177 - 68,448,439 (-)NCBICHM1_1
Cenpc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21421,988,067 - 22,046,732 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1421,988,144 - 22,055,476 (+)Ensembl
Rnor_6.01423,611,909 - 23,670,314 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1423,611,735 - 23,670,475 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01423,515,129 - 23,571,976 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41423,771,576 - 23,829,980 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11423,771,575 - 23,829,977 (+)NCBI
Celera1421,462,361 - 21,520,618 (+)NCBICelera
Cytogenetic Map14p21NCBI
Cenpc
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554475,345,896 - 5,406,730 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554475,345,617 - 5,406,889 (+)NCBIChiLan1.0ChiLan1.0
CENPC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1462,895,346 - 62,968,511 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl462,895,561 - 62,968,383 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0456,503,353 - 56,615,246 (+)NCBIMhudiblu_PPA_v0panPan3
CENPC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11358,013,218 - 58,091,347 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1358,013,212 - 58,231,200 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1357,928,845 - 58,006,993 (-)NCBI
ROS_Cfam_1.01358,634,688 - 58,702,538 (-)NCBI
UMICH_Zoey_3.11358,350,980 - 58,428,821 (-)NCBI
UNSW_CanFamBas_1.01357,841,062 - 57,919,053 (-)NCBI
UU_Cfam_GSD_1.01358,850,883 - 58,929,219 (-)NCBI
Cenpc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528518,357,663 - 18,414,077 (+)NCBI
SpeTri2.0NW_004936582920,852 - 978,167 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CENPC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl865,238,088 - 65,315,714 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1865,237,825 - 65,315,788 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2869,658,715 - 69,740,181 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CENPC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.171,393,336 - 1,464,189 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl71,393,348 - 1,467,989 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660661,480,301 - 1,552,594 (+)NCBIVero_WHO_p1.0
Cenpc
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247611,422,857 - 1,498,726 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
AU022245  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38586,040,695 - 86,040,944UniSTSGRCm38
MGSCv37586,469,720 - 86,469,969UniSTSGRCm37
Celera583,272,623 - 83,272,872UniSTS
Cytogenetic Map5E2-E5UniSTS
Whitehead/MRC_RH51127.59UniSTS
32.MHAa56g8.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38586,014,661 - 86,014,856UniSTSGRCm38
MGSCv37586,443,686 - 86,443,881UniSTSGRCm37
Celera583,246,579 - 83,246,774UniSTS
Cytogenetic Map5E2-E5UniSTS
Whitehead_YAC5 UniSTS
U03113  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38586,012,055 - 86,012,154UniSTSGRCm38
MGSCv37586,441,080 - 86,441,179UniSTSGRCm37
Celera583,243,994 - 83,244,094UniSTS
Cytogenetic Map5E2-E5UniSTS
Whitehead/MRC_RH51127.26UniSTS
PMC18698P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38586,037,500 - 86,037,963UniSTSGRCm38
MGSCv37586,466,525 - 86,466,988UniSTSGRCm37
Celera583,269,424 - 83,269,887UniSTS
Cytogenetic Map5E2-E5UniSTS
PMC18698P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38586,037,630 - 86,037,951UniSTSGRCm38
MGSCv37586,466,655 - 86,466,976UniSTSGRCm37
Celera583,269,554 - 83,269,875UniSTS
Cytogenetic Map5E2-E5UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5884069387693978Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526236236138457140Mouse
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined31975890100630065Mouse
4141219W10q16_mweight 10 weeks QTL 16 (mouse)Not determined31975890100630065Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537424144112317856Mouse
11041665Lmr24_mleishmaniasis resistance 24 (mouse)552537120107173175Mouse
11041899Lmr24a_mleishmaniasis resistance 24a (mouse)552537120107173175Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554342835126924008Mouse
1301243Bmd2_mbone mineral density 2 (mouse)Not determined555230992100307666Mouse
4142317Rgcs1_mretinal ganglion cell susceptible 1 (mouse)Not determined55230992108614761Mouse
13464248Ahl13_mage related hearing loss, early onset 13 (mouse)55548853189488652Mouse
10043962Obq27_mobesity QTL 27 (mouse)Not determined55612831290128312Mouse
10044005Ahl7_mage related hearing loss 7 (mouse)Not determined55816984192169980Mouse
11040589Lmr3a_mleishmaniasis resistance 3a (mouse)55945495493455133Mouse
11040590Lmr3b_mleishmaniasis resistance 3b (mouse)55945495493455133Mouse
11040591Lmr3c_mleishmaniasis resistance 3c (mouse)55945495493455133Mouse
11040592Lmr3d_mleishmaniasis resistance 3d (mouse)55945495493455133Mouse
1301843Listr1_mlisteriosis resistance 1 (mouse)Not determined56009823494098356Mouse
13464247Ahl14_mage related hearing loss, early onset 14 (mouse)56025521594255313Mouse
4142428Modvl1_mmodifier of vacuolated lens 1 (mouse)Not determined6250272196502841Mouse
1301010ahl2_mage related hearing loss 2 (mouse)Not determined56250272196502841Mouse
11252124Modvl6_mmodifier of vacuolated lens 6 (mouse)56250272196502841Mouse
13464250Ahl15_mage related hearing loss, early onset 15 (mouse)56250272196502841Mouse
10045972Tir5_mtrypanosome infection response 5 (mouse)Not determined563548099104239199Mouse
11049560Lmr24d_mleishmaniasis resistance 24d (mouse)56422703098227149Mouse
12904739M2fscn2_mmodifier 2 of FSCN2 (mouse)566381814100381814Mouse
12904740M1fscn2_mmodifier 1 of Fscn2 (mouse)566381814100381814Mouse
26884395Humsd2_mhumerus midshaft diameter 2, 10 week (mouse)569900000132500000Mouse
10043993Hbnr10_mHeligmosomoides bakeri nematode resistance 10 (mouse)Not determined572271017106271152Mouse
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572700000140000000Mouse
13506928Recrq8_mrecombination rate in male meiosis QTL 8 (mouse)574300000132500000Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574300000132500000Mouse
4141124Dshv2_mdorsal hippocampal volume 2 (mouse)Not determined57515468797871944Mouse
1357431Cia27_mcollagen induced arthritis 27 (mouse)Not determined575154687119880564Mouse
4141438Skmw13_mskeletal muscle weight 13 (mouse)Not determined576042404110042620Mouse
4141505Chlq14_mcirculating hormone level QTL 14 (mouse)Not determined576132927110133058Mouse
1301691Cdcs10_mcytokine deficiency colitis susceptibility 10 (mouse)Not determined576132927110133058Mouse
1300986Hdlq2_mHDL QTL 2 (mouse)Not determined576132927110133058Mouse
1300931Cocrb6_mcocaine related behavior 6 (mouse)Not determined576297205110297366Mouse
1301829Thyls2_mthymic lymphoma susceptibility 2 (mouse)Not determined576297205110297366Mouse
1301713Dbsty2_mdiabesity 2 (mouse)Not determined576297205110297366Mouse
13464249Ahl16_mage related hearing loss, early onset 16 (mouse)576297205110297366Mouse
12910784Pwgrq15_mpost-weaning growth rate QTL 15 (mouse)57702797697510356Mouse
12910816Ogrq2_moverall growth rate QTL 2 (mouse)57702797697510356Mouse
10401246Bglu13_mblood glucose level 13 (mouse)Not determined579391781113391927Mouse
10755524Mono1_mmonocyte differential 1 (mouse)580701400114701400Mouse
1301419Cypr3_mcytokine production 3 (mouse)Not determined580871790114871944Mouse
10401245Bglu18_mblood glucose level 18 (mouse)Not determined582690609116690738Mouse
13464242Ahl17_mage related hearing loss, early onset 17 (mouse)582690609116690738Mouse
12738408Lfibq5_mliver fibrosis QTL 5 (mouse)58463599489818182Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:74
Count of miRNA genes:60
Interacting mature miRNAs:61
Transcripts:ENSMUST00000031170
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001345902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001345903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001345904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_007683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC101846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC107634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF012708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF152341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK020042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK089392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC150700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY718033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U03113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000031170   ⟹   ENSMUSP00000031170
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl586,159,883 - 86,213,442 (-)Ensembl
GRCm38.p6 Ensembl586,012,024 - 86,065,583 (-)Ensembl
RefSeq Acc Id: ENSMUST00000198059
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl586,192,626 - 86,213,406 (-)Ensembl
GRCm38.p6 Ensembl586,044,767 - 86,065,547 (-)Ensembl
RefSeq Acc Id: ENSMUST00000199141
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl586,204,975 - 86,213,381 (-)Ensembl
GRCm38.p6 Ensembl586,057,116 - 86,065,522 (-)Ensembl
RefSeq Acc Id: ENSMUST00000199392
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl586,192,625 - 86,213,410 (-)Ensembl
GRCm38.p6 Ensembl586,044,766 - 86,065,551 (-)Ensembl
RefSeq Acc Id: NM_001345902   ⟹   NP_001332831
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39586,159,883 - 86,213,442 (-)NCBI
GRCm38586,012,024 - 86,065,583 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001345903   ⟹   NP_001332832
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39586,159,883 - 86,213,442 (-)NCBI
GRCm38586,012,024 - 86,065,583 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001345904   ⟹   NP_001332833
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39586,159,883 - 86,213,442 (-)NCBI
GRCm38586,012,024 - 86,065,583 (-)NCBI
Sequence:
RefSeq Acc Id: NM_007683   ⟹   NP_031709
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39586,159,883 - 86,213,442 (-)NCBI
GRCm38586,012,024 - 86,065,583 (-)NCBI
MGSCv37586,441,049 - 86,494,608 (-)RGD
Celera583,243,963 - 83,297,482 (-)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017320636   ⟹   XP_017176125
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39586,161,739 - 86,214,325 (-)NCBI
GRCm38586,014,020 - 86,065,959 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017320638   ⟹   XP_017176127
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39586,159,883 - 86,214,325 (-)NCBI
GRCm38586,012,024 - 86,065,954 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254095   ⟹   XP_030109955
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39586,159,877 - 86,214,325 (-)NCBI
GRCm38586,012,018 - 86,065,962 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254096   ⟹   XP_030109956
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39586,161,382 - 86,214,325 (-)NCBI
GRCm38586,013,522 - 86,065,960 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254097   ⟹   XP_030109957
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39586,159,883 - 86,214,325 (-)NCBI
GRCm38586,012,024 - 86,065,954 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036164763   ⟹   XP_036020656
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39586,159,877 - 86,214,325 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_031709   ⟸   NM_007683
- Peptide Label: isoform 2
- UniProtKB: P49452 (UniProtKB/Swiss-Prot),   Q3UPF6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017176127   ⟸   XM_017320638
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017176125   ⟸   XM_017320636
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_030109955   ⟸   XM_030254095
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030109957   ⟸   XM_030254097
- Peptide Label: isoform X5
RefSeq Acc Id: NP_001332833   ⟸   NM_001345904
- Peptide Label: isoform 4
- UniProtKB: P49452 (UniProtKB/Swiss-Prot),   Q3UPF6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001332832   ⟸   NM_001345903
- Peptide Label: isoform 3
- UniProtKB: P49452 (UniProtKB/Swiss-Prot),   Q3UPF6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001332831   ⟸   NM_001345902
- Peptide Label: isoform 1
- UniProtKB: P49452 (UniProtKB/Swiss-Prot),   Q3UPF6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030109956   ⟸   XM_030254096
- Peptide Label: isoform X2
RefSeq Acc Id: ENSMUSP00000031170   ⟸   ENSMUST00000031170
RefSeq Acc Id: XP_036020656   ⟸   XM_036164763
- Peptide Label: isoform X4
Protein Domains
CENP-C_mid   CENP_C_N

Promoters
RGD ID:6887000
Promoter ID:EPDNEW_M6951
Type:initiation region
Name:Cenpc1_1
Description:Mus musculus centromere protein C1 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38586,065,547 - 86,065,607EPDNEW
RGD ID:6837244
Promoter ID:MM_KWN:42719
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_007683,   UC008XXD.1,   UC008XXE.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36586,494,211 - 86,494,827 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:99700 AgrOrtholog
Ensembl Genes ENSMUSG00000029253 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000031170 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000031170 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.120.10 UniProtKB/Swiss-Prot
InterPro CENP-C/Mif2/cnp3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CENP-C_mid UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CENP_C_N_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Mif2/CENP-C_cupin UniProtKB/Swiss-Prot
  RmlC-like_jellyroll UniProtKB/Swiss-Prot
  RmlC_Cupin_sf UniProtKB/Swiss-Prot
KEGG Report mmu:12617 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:99700 ENTREZGENE
NCBI Gene 12617 ENTREZGENE
PANTHER PTHR16684 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CENP-C_C UniProtKB/Swiss-Prot
  CENP-C_mid UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CENP_C_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cenpc1 PhenoGen
Superfamily-SCOP SSF51182 UniProtKB/Swiss-Prot
UniProt CENPC_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3UPF6 ENTREZGENE, UniProtKB/TrEMBL
  Q3UUX2_MOUSE UniProtKB/TrEMBL
  Q9CRZ7_MOUSE UniProtKB/TrEMBL
UniProt Secondary B9EK81 UniProtKB/Swiss-Prot