Krt5 (keratin 5) - Rat Genome Database

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Gene: Krt5 (keratin 5) Mus musculus
Analyze
Symbol: Krt5
Name: keratin 5
RGD ID: 1553117
MGI Page MGI
Description: Predicted to enable scaffold protein binding activity. Predicted to be a structural constituent of skin epidermis. Involved in several processes, including intermediate filament polymerization; regulation of cell migration; and response to mechanical stimulus. Located in cytoplasm; keratin filament; and plasma membrane. Is active in cornified envelope. Is expressed in several structures, including alimentary system; epithelium; genitourinary system; integumental system; and sensory organ. Used to study epidermolysis bullosa simplex Dowling-Meara type. Human ortholog(s) of this gene implicated in Dowling-Degos disease; epidermolysis bullosa simplex; and epidermolysis bullosa simplex with mottled pigmentation. Orthologous to human KRT5 (keratin 5).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 3300001P10Rik; 58 kDa cytokeratin; AW146334; CK-5; CK5; cytokeratin 5; cytokeratin-5; K5; keratin complex 2, basic, gene 5; keratin, type II cytoskeletal 5; keratin-5; Krt2-; Krt2-5; Tfi; Tfip8; tuftelin interacting protein 8; type-II keratin Kb5
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915101,615,504 - 101,621,340 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl15101,615,505 - 101,621,333 (-)EnsemblGRCm39 Ensembl
GRCm3815101,707,069 - 101,712,905 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15101,707,070 - 101,712,898 (-)EnsemblGRCm38mm10GRCm38
MGSCv3715101,537,501 - 101,543,322 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3615101,535,104 - 101,540,925 (-)NCBIMGSCv36mm8
Celera15103,860,955 - 103,866,779 (-)NCBICelera
Cytogenetic Map15F2NCBI
cM Map1556.98NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1-chloro-2,4-dinitrobenzene  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (ISO)
7,12-dimethyltetraphene  (ISO)
9-cis-retinoic acid  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
aldehydo-D-glucose  (EXP)
all-trans-4-oxoretinoic acid  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (ISO)
andrographolide  (EXP)
arotinoid acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
beauvericin  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[e]pyrene  (ISO)
beta-naphthoflavone  (EXP)
bexarotene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (ISO)
bisphenol F  (EXP)
butan-1-ol  (ISO)
butane-2,3-dione  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
cantharidin  (EXP)
carbon nanotube  (EXP)
chlordecone  (EXP)
chlorogenic acid  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (EXP)
choline  (EXP)
chromium(6+)  (EXP)
cyclosporin A  (ISO)
D-glucose  (EXP)
dimethylarsinic acid  (EXP)
diuron  (ISO)
enniatin  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
folic acid  (EXP)
fructose  (EXP)
genistein  (EXP,ISO)
glucose  (EXP)
glycidyl methacrylate  (ISO)
imidacloprid  (ISO)
irinotecan  (ISO)
isobutanol  (ISO)
isoflavones  (ISO)
isotretinoin  (ISO)
ivermectin  (ISO)
L-methionine  (EXP)
lead(0)  (ISO)
methapyrilene  (ISO)
morphine  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-nitrosodiethylamine  (ISO)
N-nitrosomorpholine  (ISO)
nickel atom  (ISO)
O-methyleugenol  (ISO)
Osajin  (ISO)
ozone  (ISO)
paracetamol  (ISO)
perfluorononanoic acid  (ISO)
phenobarbital  (ISO)
phenyl isocyanate  (ISO)
PhIP  (ISO)
Pomiferin  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
silicon dioxide  (EXP,ISO)
sodium arsenite  (ISO)
sulindac sulfide  (ISO)
tamoxifen  (EXP)
titanium dioxide  (EXP)
trichloroethene  (ISO)
triptonide  (EXP)
troglitazone  (ISO)
valproic acid  (ISO)
zearalenone  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. A mutation in the conserved helix termination peptide of keratin 5 in hereditary skin blistering. Lane EB, etal., Nature. 1992 Mar 19;356(6366):244-6.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. MGD IEA MGD IEA
5. Differential expression of keratin 5 gene in non-tumorigenic and tumorigenic rat bladder cell lines. Nan L, etal., Cancer Lett. 1993 Dec 10;75(2):87-93.
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
8. Hague (Hag). A new mouse hair mutation with an unstable semidominant allele. Poirier C, etal., Genetics 2002 Oct;162(2):831-40.
9. Mouse MP Annotation Import Pipeline RGD automated import pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:2458356   PMID:7525178   PMID:7679677   PMID:8707838   PMID:8991098   PMID:9670011   PMID:9847250   PMID:9873228   PMID:9932492   PMID:10191051   PMID:10349636   PMID:10571739  
PMID:11042159   PMID:11062007   PMID:11063033   PMID:11076861   PMID:11408584   PMID:11489975   PMID:11591653   PMID:11963656   PMID:12068292   PMID:12218095   PMID:12477932   PMID:12514121  
PMID:12557214   PMID:12653252   PMID:12657653   PMID:12702649   PMID:12791272   PMID:12859204   PMID:12923059   PMID:14610062   PMID:14638864   PMID:15189821   PMID:15489334   PMID:15528198  
PMID:15611228   PMID:15705807   PMID:15746257   PMID:15753128   PMID:16141072   PMID:16141073   PMID:16180309   PMID:16210626   PMID:16239341   PMID:16288735   PMID:16410075   PMID:16452166  
PMID:16459298   PMID:16462742   PMID:16513945   PMID:16790075   PMID:16809539   PMID:16809609   PMID:16831889   PMID:16901790   PMID:16914743   PMID:16949565   PMID:17002498   PMID:17011173  
PMID:17079689   PMID:17202344   PMID:17276340   PMID:17360773   PMID:17577402   PMID:17581617   PMID:17625108   PMID:17626181   PMID:17683113   PMID:17724334   PMID:18039792   PMID:18243104  
PMID:18285451   PMID:18287559   PMID:18311128   PMID:18397270   PMID:18410734   PMID:18434600   PMID:18593557   PMID:18614015   PMID:18799149   PMID:18809908   PMID:18824566   PMID:18849982  
PMID:18974357   PMID:19015306   PMID:19038788   PMID:19050235   PMID:19135046   PMID:19234195   PMID:19263498   PMID:19267394   PMID:19300453   PMID:19303854   PMID:19461998   PMID:19494829  
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PMID:21262812   PMID:21267068   PMID:21356385   PMID:21400497   PMID:21429982   PMID:21464233   PMID:21502490   PMID:21565611   PMID:21589869   PMID:21636786   PMID:21703447   PMID:21754978  
PMID:21803035   PMID:21873635   PMID:21937690   PMID:21949412   PMID:21965329   PMID:21983963   PMID:22020075   PMID:22072979   PMID:22087235   PMID:22094257   PMID:22135020   PMID:22274697  
PMID:22282597   PMID:22365545   PMID:22366455   PMID:22377357   PMID:22464328   PMID:22505032   PMID:22832491   PMID:22895363   PMID:22951731   PMID:22962592   PMID:23007396   PMID:23028652  
PMID:23064263   PMID:23132931   PMID:23178882   PMID:23228673   PMID:23248263   PMID:23362346   PMID:23389444   PMID:23449535   PMID:23487314   PMID:23571213   PMID:23620512   PMID:23750244  
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PMID:24198274   PMID:24222445   PMID:24337118   PMID:24371813   PMID:24394376   PMID:24449888   PMID:24463516   PMID:24492243   PMID:24524909   PMID:24594519   PMID:24671096   PMID:24735878  
PMID:24749073   PMID:24794706   PMID:24796293   PMID:24867950   PMID:24940650   PMID:24982158   PMID:25016959   PMID:25038042   PMID:25043473   PMID:25053428   PMID:25136113   PMID:25197048  
PMID:25202828   PMID:25241035   PMID:25249461   PMID:25299669   PMID:25327250   PMID:25329657   PMID:25340052   PMID:25358791   PMID:25376721   PMID:25383540   PMID:25503409   PMID:25516972  
PMID:25533958   PMID:25547114   PMID:25564622   PMID:25601450   PMID:25770130   PMID:25790853   PMID:25805134   PMID:25968320   PMID:25997579   PMID:26045045   PMID:26046524   PMID:26067252  
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PMID:26655443   PMID:26690418   PMID:26711912   PMID:26765568   PMID:26811382   PMID:26882546   PMID:26975724   PMID:27046834   PMID:27120339   PMID:27208706   PMID:27284162   PMID:27298324  
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PMID:28964716   PMID:28973166   PMID:29019984   PMID:29173895   PMID:29181608   PMID:29307825   PMID:29361573   PMID:29386246   PMID:29459677   PMID:29490983   PMID:29518391   PMID:29587145  
PMID:29596938   PMID:29602800   PMID:29684584   PMID:29700203   PMID:29712925   PMID:29802408   PMID:29867988   PMID:29899403   PMID:30022023   PMID:30026494   PMID:30061411   PMID:30188892  
PMID:30220568   PMID:30237242   PMID:30305288   PMID:30305289   PMID:30457570   PMID:30478225   PMID:30504223   PMID:30651296   PMID:30659795   PMID:30701202   PMID:30720908   PMID:30898767  
PMID:30916783   PMID:30923192   PMID:30930146   PMID:30976911   PMID:31056475   PMID:31068622   PMID:31128203   PMID:31216312   PMID:31220272   PMID:31242421   PMID:31269445   PMID:31322419  
PMID:31492871   PMID:31552487   PMID:31556874   PMID:31562139   PMID:31575645   PMID:31575647   PMID:31597917   PMID:31631837   PMID:31776260   PMID:31792212   PMID:31827281   PMID:31884525  
PMID:32109382   PMID:32133718   PMID:32178760   PMID:32179912   PMID:32286221   PMID:32296071   PMID:32325033   PMID:32341550   PMID:32385093   PMID:32452625   PMID:32467237   PMID:32467240  
PMID:32721381   PMID:32758484   PMID:32801160   PMID:32845239   PMID:33025905   PMID:33033227   PMID:33057384   PMID:33058780   PMID:33093151   PMID:33120014   PMID:33199643   PMID:33262312  
PMID:33305192   PMID:33318148   PMID:33328632   PMID:33412104   PMID:33428297   PMID:33452256   PMID:33470495   PMID:33515576   PMID:33882290   PMID:34079126   PMID:34111600   PMID:34129836  
PMID:34254201   PMID:34286693   PMID:34474245   PMID:34508852   PMID:34556631   PMID:34653670   PMID:34721382   PMID:34905516   PMID:34995498   PMID:34998785   PMID:35020897   PMID:35042581  
PMID:35077450   PMID:35103284   PMID:35112129   PMID:35247391   PMID:35273595   PMID:35283102   PMID:35294885   PMID:35401828   PMID:35512705   PMID:35614226   PMID:35648290   PMID:35859175  
PMID:35902588   PMID:35905011   PMID:35941116   PMID:36094016   PMID:36108220   PMID:36330928   PMID:36369237   PMID:36418889   PMID:36516758   PMID:36576725   PMID:36606449   PMID:36641754  
PMID:36685938   PMID:37352117   PMID:37364687   PMID:37479688   PMID:37527037   PMID:37715952   PMID:37726288   PMID:37838739  


Genomics

Comparative Map Data
Krt5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915101,615,504 - 101,621,340 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl15101,615,505 - 101,621,333 (-)EnsemblGRCm39 Ensembl
GRCm3815101,707,069 - 101,712,905 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15101,707,070 - 101,712,898 (-)EnsemblGRCm38mm10GRCm38
MGSCv3715101,537,501 - 101,543,322 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3615101,535,104 - 101,540,925 (-)NCBIMGSCv36mm8
Celera15103,860,955 - 103,866,779 (-)NCBICelera
Cytogenetic Map15F2NCBI
cM Map1556.98NCBI
KRT5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381252,514,575 - 52,520,394 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1252,514,575 - 52,520,530 (-)EnsemblGRCh38hg38GRCh38
GRCh371252,908,359 - 52,914,178 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361251,194,626 - 51,200,510 (-)NCBINCBI36Build 36hg18NCBI36
Build 341251,194,627 - 51,200,510NCBI
Celera1252,554,605 - 52,560,489 (-)NCBICelera
Cytogenetic Map12q13.13NCBI
HuRef1249,952,275 - 49,958,159 (-)NCBIHuRef
CHM1_11252,875,216 - 52,881,100 (-)NCBICHM1_1
T2T-CHM13v2.01252,479,176 - 52,484,995 (-)NCBIT2T-CHM13v2.0
Krt5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27132,846,132 - 132,851,861 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7132,846,136 - 132,851,850 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7134,609,855 - 134,615,592 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07136,839,382 - 136,845,119 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07136,808,400 - 136,814,179 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07143,320,142 - 143,324,536 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7143,316,920 - 143,453,546 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07141,118,058 - 141,122,452 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera7129,286,649 - 129,292,077 (-)NCBICelera
Cytogenetic Map7q36NCBI
Krt5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555472,773,523 - 2,932,609 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555472,926,154 - 2,931,954 (-)NCBIChiLan1.0ChiLan1.0
KRT5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan11241,670,947 - 41,678,773 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01236,243,221 - 36,249,573 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11237,021,041 - 37,027,162 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1237,021,432 - 37,025,105 (+)Ensemblpanpan1.1panPan2
KRT81
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1272,776,693 - 2,782,016 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2743,472,174 - 43,477,436 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0272,775,686 - 2,780,954 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl272,775,686 - 2,780,617 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1272,792,435 - 2,797,701 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0272,778,556 - 2,783,808 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02743,870,381 - 43,875,650 (-)NCBIUU_Cfam_GSD_1.0
Krt5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494563,235,313 - 63,241,237 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365129,922,523 - 9,929,517 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049365129,923,593 - 9,929,517 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KRT5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl517,862,051 - 17,868,402 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1517,862,047 - 17,868,397 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2518,365,764 - 18,372,131 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KRT5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11148,660,946 - 48,673,593 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1148,660,961 - 48,666,830 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037197,404,963 - 197,411,146 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Krt5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624904655,080 - 681,112 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624904655,192 - 681,046 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Krt5
199 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:173
Count of miRNA genes:161
Interacting mature miRNAs:162
Transcripts:ENSMUST00000023709
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548363396101708435Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556186708103425899Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564306334103425899Mouse
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570345653104073951Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570349271104073951Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570349271104073951Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572382669104073951Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573430144104073951Mouse
1300851Heal4_mwound healing/regeneration 4 (mouse)Not determined1577527592104073951Mouse
4142060W3q6_mweight 3 weeks QTL 6 (mouse)Not determined78601103102901704Mouse
1357894Epfpq3_mepididymal fat percentage QTL 3 (mouse)Not determined1578601103102901704Mouse
14928306Manh79_mmandible shape 79 (mouse)1578847557104073951Mouse
12880411V125Dq11_mvitamin D active form serum level QTL 11 (mouse)1578897881104073951Mouse
10402490Dipa5_mdrug induced psychomotor activation 5 (mouse)Not determined1579163411104073951Mouse
4141897Imrfq2_mimmune response to Factor IX QTL 2 (mouse)Not determined79908940104073951Mouse
1301284Cosz3_mcocaine seizure 3 (mouse)Not determined1580313634104073951Mouse
4141902Cia37_mcollagen induced arthritis 37 (mouse)Not determined1580884933104073951Mouse
1300974Pgia9_mproteoglycan induced arthritis 9 (mouse)Not determined1580884933104073951Mouse
4141511Gdcr1_mglycerolphosphate dehydrogenase regulator 1 (mouse)Not determined82615474104073951Mouse
11530037Sluc34a_msusceptibility to lung cancer 34a (mouse)1585896437104073951Mouse
11530038Sluc34b_msusceptibility to lung cancer 34b (mouse)1585896437104073951Mouse
1357614Bmca_mbile mucin accumulation (mouse)Not determined1585896437104073951Mouse
1301918Skull22_mskull morphology 22 (mouse)Not determined1585901546104073951Mouse
4141581Dshv1_mdorsal hippocampal volume 1 (mouse)Not determined92788640103425899Mouse
14700689Carg5_mCandida albicans resistance gene 5 (mouse)1597697881103008427Mouse
11528547Sluc34_msusceptibility to lung cancer 34 (mouse)1597884933102896555Mouse

Markers in Region
AW146334  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3815101,707,420 - 101,707,534UniSTSGRCm38
MGSCv3715101,537,851 - 101,537,965UniSTSGRCm37
Celera15103,861,305 - 103,861,419UniSTS
Cytogenetic Map15F2UniSTS
cM Map1558.79UniSTS
Whitehead/MRC_RH15928.61UniSTS
Krt2-5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3815101,707,105 - 101,707,688UniSTSGRCm38
MGSCv3715101,537,536 - 101,538,119UniSTSGRCm37
Celera15103,860,990 - 103,861,573UniSTS
Cytogenetic Map15F2UniSTS
cM Map1558.79UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000023709   ⟹   ENSMUSP00000023709
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl15101,615,505 - 101,621,333 (-)Ensembl
GRCm38.p6 Ensembl15101,707,070 - 101,712,898 (-)Ensembl
RefSeq Acc Id: NM_027011   ⟹   NP_081287
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3915101,615,504 - 101,621,340 (-)NCBI
GRCm3815101,707,069 - 101,712,905 (-)NCBI
MGSCv3715101,537,501 - 101,543,322 (-)RGD
Celera15103,860,955 - 103,866,779 (-)RGD
cM Map15 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_081287 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH06780 (Get FASTA)   NCBI Sequence Viewer  
  AAI08362 (Get FASTA)   NCBI Sequence Viewer  
  AAL16774 (Get FASTA)   NCBI Sequence Viewer  
  BAB29298 (Get FASTA)   NCBI Sequence Viewer  
  EDL04029 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000023709
GenBank Protein Q922U2 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_081287   ⟸   NM_027011
- UniProtKB: Q920F2 (UniProtKB/Swiss-Prot),   Q922U2 (UniProtKB/Swiss-Prot),   Q32P04 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000023709   ⟸   ENSMUST00000023709
Protein Domains
IF rod

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q922U2-F1-model_v2 AlphaFold Q922U2 1-580 view protein structure

Promoters
RGD ID:8685136
Promoter ID:EPDNEW_M20599
Type:multiple initiation site
Name:Krt5_1
Description:Mus musculus keratin 5 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3815101,712,905 - 101,712,965EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:96702 AgrOrtholog
Ensembl Genes ENSMUSG00000061527 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000023709 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.5.170 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Single helix bin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Vasodilator-stimulated phosphoprotein UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro IF_conserved UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IF_rod_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Keratin_2_head UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Keratin_II UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:110308 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:96702 ENTREZGENE
NCBI Gene 110308 ENTREZGENE
PANTHER GATA-TYPE DOMAIN-CONTAINING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KERATIN, TYPE II CYTOSKELETAL 5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Filament UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Keratin_2_head UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Krt5 PhenoGen
PRINTS TYPE2KERATIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE IF_ROD_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IF_ROD_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Filament UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Intermediate filament protein, coiled coil region UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt K2C5_MOUSE UniProtKB/Swiss-Prot
  Q32P04 ENTREZGENE, UniProtKB/TrEMBL
  Q920F2 ENTREZGENE
  Q922U2 ENTREZGENE
  Q9CRS6_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q920F2 UniProtKB/Swiss-Prot