Pdlim2 (PDZ and LIM domain 2) - Rat Genome Database

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Gene: Pdlim2 (PDZ and LIM domain 2) Mus musculus
Analyze
Symbol: Pdlim2
Name: PDZ and LIM domain 2
RGD ID: 1553016
MGI Page MGI
Description: Enables ubiquitin protein ligase binding activity. Involved in protein catabolic process. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be part of filamentous actin. Predicted to be active in Z disc; adherens junction; and stress fiber. Predicted to colocalize with cortical actin cytoskeleton. Is expressed in embryo. Orthologous to human PDLIM2 (PDZ and LIM domain 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4732462F18Rik; MGC37634; mystiq; mystique; PDZ and LIM domain protein 2; PDZ-LIM protein mystique; RIKEN cDNA 4732462F18 gene; S; Slim; STAT-interacting LIM protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391470,401,667 - 70,415,140 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1470,401,667 - 70,415,130 (-)EnsemblGRCm39 Ensembl
GRCm381470,162,621 - 70,177,672 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1470,164,218 - 70,177,681 (-)EnsemblGRCm38mm10GRCm38
MGSCv371470,564,025 - 70,577,479 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361468,899,298 - 68,912,752 (-)NCBIMGSCv36mm8
Celera1467,704,941 - 67,718,471 (-)NCBICelera
Cytogenetic Map14D2NCBI
cM Map1436.26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-nicotine  (EXP)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,4,6-trinitrotoluene  (ISO)
2,4-dinitrotoluene  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-\{[(5,5,8,8-tetramethyl-5,6,7,8-tetrahydronaphthalen-2-yl)carbonyl]amino\}benzoic acid  (ISO)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amiodarone  (ISO)
amitrole  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[e]pyrene  (ISO)
Benzo[k]fluoranthene  (EXP)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
caffeine  (ISO)
calcitriol  (ISO)
carbon nanotube  (EXP)
chlorpyrifos  (EXP)
cobalt dichloride  (ISO)
corn oil  (ISO)
coumarin  (ISO)
cyclosporin A  (EXP)
daidzein  (ISO)
deoxynivalenol  (EXP)
dibutyl phthalate  (ISO)
diethyl maleate  (ISO)
endosulfan  (ISO)
ethanol  (EXP)
fenamidone  (EXP)
fenvalerate  (ISO)
furan  (ISO)
genistein  (ISO)
gentamycin  (ISO)
glycidol  (ISO)
glycitein  (ISO)
ivermectin  (ISO)
kojic acid  (ISO)
lipopolysaccharide  (ISO)
methapyrilene  (ISO)
methimazole  (ISO)
methotrexate  (EXP)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (EXP)
morphine  (EXP)
nicotine  (EXP)
O-methyleugenol  (ISO)
ozone  (ISO)
paracetamol  (ISO)
PCB138  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
sulfadimethoxine  (ISO)
tamoxifen  (EXP)
testosterone  (EXP,ISO)
tetrachloromethane  (EXP)
thioacetamide  (ISO)
triptonide  (EXP)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Mouse MP Annotation Import Pipeline RGD automated import pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15489334   PMID:15659642   PMID:15963787   PMID:16109395   PMID:16141072  
PMID:16141073   PMID:16602821   PMID:17015433   PMID:17468759   PMID:17898865   PMID:18198183   PMID:18973680   PMID:19052146   PMID:19230833   PMID:20145149   PMID:21814175   PMID:21873635  
PMID:22155789   PMID:25515536   PMID:27113764   PMID:28315683   PMID:28378844   PMID:29852170   PMID:29934320   PMID:30333137   PMID:31757943   PMID:32805696   PMID:32849529   PMID:33539325  


Genomics

Comparative Map Data
Pdlim2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391470,401,667 - 70,415,140 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1470,401,667 - 70,415,130 (-)EnsemblGRCm39 Ensembl
GRCm381470,162,621 - 70,177,672 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1470,164,218 - 70,177,681 (-)EnsemblGRCm38mm10GRCm38
MGSCv371470,564,025 - 70,577,479 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361468,899,298 - 68,912,752 (-)NCBIMGSCv36mm8
Celera1467,704,941 - 67,718,471 (-)NCBICelera
Cytogenetic Map14D2NCBI
cM Map1436.26NCBI
PDLIM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38822,578,741 - 22,598,026 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl822,578,279 - 22,598,025 (+)EnsemblGRCh38hg38GRCh38
GRCh37822,436,254 - 22,455,539 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36822,492,588 - 22,511,483 (+)NCBINCBI36Build 36hg18NCBI36
Build 34822,493,928 - 22,507,753NCBI
Celera821,398,253 - 21,417,218 (+)NCBICelera
Cytogenetic Map8p21.3NCBI
HuRef820,978,620 - 20,998,302 (+)NCBIHuRef
CHM1_1822,638,615 - 22,657,872 (+)NCBICHM1_1
T2T-CHM13v2.0822,852,592 - 22,871,886 (+)NCBIT2T-CHM13v2.0
Pdlim2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81551,647,195 - 51,659,904 (-)NCBIGRCr8
mRatBN7.21545,235,421 - 45,250,187 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1545,237,477 - 45,249,242 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1549,355,325 - 49,367,092 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01550,466,819 - 50,478,584 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01547,326,135 - 47,337,906 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01551,843,562 - 51,856,785 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1551,843,564 - 51,855,325 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01555,569,716 - 55,582,403 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41550,564,108 - 50,575,871 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11550,579,889 - 50,591,651 (-)NCBI
Celera1544,916,943 - 44,928,696 (-)NCBICelera
Cytogenetic Map15p11NCBI
Pdlim2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540346,006,255 - 46,019,865 (+)NCBIChiLan1.0ChiLan1.0
PDLIM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2741,085,786 - 41,101,352 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1816,811,012 - 16,826,587 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0821,828,923 - 21,844,483 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1818,767,109 - 18,783,307 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl818,767,142 - 18,783,658 (+)Ensemblpanpan1.1panPan2
PDLIM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12534,684,954 - 34,699,144 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2534,684,964 - 34,699,166 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2535,274,652 - 35,288,822 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02534,894,441 - 34,907,844 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2534,894,452 - 34,907,788 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12534,840,878 - 34,855,071 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02534,694,952 - 34,709,153 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02534,850,492 - 34,864,707 (-)NCBIUU_Cfam_GSD_1.0
Pdlim2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494312,238,957 - 12,251,623 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365556,318,762 - 6,331,575 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365556,318,813 - 6,331,556 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PDLIM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl146,834,779 - 6,848,526 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1146,834,116 - 6,848,536 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2147,314,401 - 7,328,566 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PDLIM2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1820,658,642 - 20,674,915 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl820,659,361 - 20,674,900 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605221,552,160 - 21,568,193 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pdlim2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475818,085,818 - 18,098,621 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pdlim2
356 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1689
Count of miRNA genes:558
Interacting mature miRNAs:691
Transcripts:ENSMUST00000022681, ENSMUST00000123125, ENSMUST00000125300, ENSMUST00000127836, ENSMUST00000129174, ENSMUST00000135944, ENSMUST00000138792, ENSMUST00000141363, ENSMUST00000143393, ENSMUST00000153735
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143743018571430320Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse
1301489Lbm10_mlean body mass 10 (mouse)Not determined145376129687761529Mouse
12880432Fgf23lq3_mFGF23 serum level QTL 3 (mouse)145393744087937440Mouse
10043889Cia52_mcollagen induced arthritis QTL 52 (mouse)Not determined145608238190082509Mouse
1301562Hwq1_mheart weight quantitative locus 1 (mouse)Not determined145654674590546941Mouse
1357565wrmod1_mwobbler modifier 1 (mouse)Not determined1458179640101859473Mouse
11039527Ccc2_mcolitis susceptibility in the Collaborative Cross 2 (mouse)145991861294138217Mouse
1300666Fembm2_mfemoral bone morphometry 2 (mouse)Not determined146239746096397680Mouse
14747006Mancz12_mmandible centroid size 12 (mouse)1470071977104071977Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000022681   ⟹   ENSMUSP00000022681
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1470,401,667 - 70,415,130 (-)Ensembl
GRCm38.p6 Ensembl1470,164,218 - 70,177,681 (-)Ensembl
RefSeq Acc Id: ENSMUST00000123125
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1470,408,961 - 70,409,435 (-)Ensembl
GRCm38.p6 Ensembl1470,171,512 - 70,171,986 (-)Ensembl
RefSeq Acc Id: ENSMUST00000125300   ⟹   ENSMUSP00000116694
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1470,402,047 - 70,405,422 (-)Ensembl
GRCm38.p6 Ensembl1470,164,598 - 70,167,973 (-)Ensembl
RefSeq Acc Id: ENSMUST00000127836   ⟹   ENSMUSP00000141050
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1470,401,996 - 70,405,843 (-)Ensembl
GRCm38.p6 Ensembl1470,164,547 - 70,168,394 (-)Ensembl
RefSeq Acc Id: ENSMUST00000129174   ⟹   ENSMUSP00000139820
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1470,401,811 - 70,405,288 (-)Ensembl
GRCm38.p6 Ensembl1470,164,362 - 70,167,839 (-)Ensembl
RefSeq Acc Id: ENSMUST00000135944
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1470,406,862 - 70,412,875 (-)Ensembl
GRCm38.p6 Ensembl1470,169,413 - 70,175,426 (-)Ensembl
RefSeq Acc Id: ENSMUST00000138792
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1470,408,883 - 70,412,869 (-)Ensembl
GRCm38.p6 Ensembl1470,171,434 - 70,175,420 (-)Ensembl
RefSeq Acc Id: ENSMUST00000141363
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1470,405,239 - 70,414,268 (-)Ensembl
GRCm38.p6 Ensembl1470,167,790 - 70,176,819 (-)Ensembl
RefSeq Acc Id: ENSMUST00000143393   ⟹   ENSMUSP00000119222
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1470,405,213 - 70,412,882 (-)Ensembl
GRCm38.p6 Ensembl1470,167,764 - 70,175,433 (-)Ensembl
RefSeq Acc Id: ENSMUST00000153735   ⟹   ENSMUSP00000116200
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1470,401,680 - 70,414,268 (-)Ensembl
GRCm38.p6 Ensembl1470,164,231 - 70,176,819 (-)Ensembl
RefSeq Acc Id: NM_001253736   ⟹   NP_001240665
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391470,401,667 - 70,414,264 (-)NCBI
GRCm381470,164,218 - 70,176,815 (-)NCBI
Celera1467,704,941 - 67,718,471 (-)ENTREZGENE
cM Map14 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_145978   ⟹   NP_666090
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391470,401,667 - 70,415,121 (-)NCBI
GRCm381470,164,218 - 70,177,672 (-)NCBI
MGSCv371470,564,025 - 70,577,479 (-)RGD
Celera1467,704,941 - 67,718,471 (-)RGD
cM Map14 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006518783   ⟹   XP_006518846
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391470,401,680 - 70,412,353 (-)NCBI
GRCm381470,162,621 - 70,174,911 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030247710   ⟹   XP_030103570
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391470,401,680 - 70,415,140 (-)NCBI
GRCm381470,162,621 - 70,176,899 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030247711   ⟹   XP_030103571
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391470,401,680 - 70,415,140 (-)NCBI
GRCm381470,162,621 - 70,176,848 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036158534   ⟹   XP_036014427
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391470,401,680 - 70,415,140 (-)NCBI
Sequence:
RefSeq Acc Id: NP_666090   ⟸   NM_145978
- UniProtKB: Q8R1G6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001240665   ⟸   NM_001253736
- UniProtKB: Q8R1G6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006518846   ⟸   XM_006518783
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_030103570   ⟸   XM_030247710
- Peptide Label: isoform X2
RefSeq Acc Id: XP_030103571   ⟸   XM_030247711
- Peptide Label: isoform X3
RefSeq Acc Id: ENSMUSP00000116694   ⟸   ENSMUST00000125300
RefSeq Acc Id: ENSMUSP00000119222   ⟸   ENSMUST00000143393
RefSeq Acc Id: ENSMUSP00000141050   ⟸   ENSMUST00000127836
RefSeq Acc Id: ENSMUSP00000139820   ⟸   ENSMUST00000129174
RefSeq Acc Id: ENSMUSP00000022681   ⟸   ENSMUST00000022681
RefSeq Acc Id: ENSMUSP00000116200   ⟸   ENSMUST00000153735
RefSeq Acc Id: XP_036014427   ⟸   XM_036158534
- Peptide Label: isoform X1
- UniProtKB: Q8R1G6 (UniProtKB/Swiss-Prot)
Protein Domains
LIM zinc-binding   PDZ

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8R1G6-F1-model_v2 AlphaFold Q8R1G6 1-349 view protein structure

Promoters
RGD ID:8682886
Promoter ID:EPDNEW_M19474
Type:initiation region
Name:Pdlim2_2
Description:Mus musculus PDZ and LIM domain 2 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M19475  EPDNEW_M19476  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381470,175,407 - 70,175,467EPDNEW
RGD ID:8682888
Promoter ID:EPDNEW_M19475
Type:multiple initiation site
Name:Pdlim2_1
Description:Mus musculus PDZ and LIM domain 2 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M19474  EPDNEW_M19476  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381470,176,804 - 70,176,864EPDNEW
RGD ID:8682890
Promoter ID:EPDNEW_M19476
Type:multiple initiation site
Name:Pdlim2_3
Description:Mus musculus PDZ and LIM domain 2 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M19474  EPDNEW_M19475  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381470,177,681 - 70,177,741EPDNEW
RGD ID:6825272
Promoter ID:MM_KWN:17360
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   BoneMarrow_0Hour,   Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000082420,   OTTMUST00000082421,   OTTMUST00000082470
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361470,567,741 - 70,569,062 (-)MPROMDB
RGD ID:6847129
Promoter ID:MM_ACW:16496
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   MEF_B4
Transcripts:PDLIM2.ISEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361470,570,234 - 70,570,734 (-)MPROMDB
RGD ID:6825271
Promoter ID:MM_KWN:17361
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0
Transcripts:OTTMUST00000082419
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361470,571,381 - 70,571,881 (-)MPROMDB
RGD ID:6847127
Promoter ID:MM_ACW:16497
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:PDLIM2.JSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361470,574,121 - 70,574,621 (-)MPROMDB
RGD ID:6825268
Promoter ID:MM_KWN:17362
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Lung,   MEF_B6,   Spleen
Transcripts:OTTMUST00000082415,   OTTMUST00000082416
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361470,574,961 - 70,576,007 (-)MPROMDB
RGD ID:6825266
Promoter ID:MM_KWN:17363
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Lung,   MEF_B6
Transcripts:OTTMUST00000082414,   OTTMUST00000082417
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361470,576,554 - 70,577,054 (-)MPROMDB
RGD ID:6825263
Promoter ID:MM_KWN:17364
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung,   MEF_B6
Transcripts:OTTMUST00000082413
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361470,577,864 - 70,578,364 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2384850 AgrOrtholog
Ensembl Genes ENSMUSG00000022090 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000022681 ENTREZGENE
  ENSMUST00000022681.11 UniProtKB/Swiss-Prot
  ENSMUST00000125300.3 UniProtKB/TrEMBL
  ENSMUST00000127836.8 UniProtKB/TrEMBL
  ENSMUST00000129174.8 UniProtKB/TrEMBL
  ENSMUST00000143393.2 UniProtKB/TrEMBL
  ENSMUST00000153735 ENTREZGENE
  ENSMUST00000153735.8 UniProtKB/Swiss-Prot
Gene3D-CATH 2.30.42.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cysteine Rich Protein UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro DUF4749 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_LIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:213019 UniProtKB/Swiss-Prot
MGD MGI:2384850 ENTREZGENE
NCBI Gene 213019 ENTREZGENE
PANTHER PDZ AND LIM DOMAIN PROTEIN 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ AND LIM DOMAIN PROTEIN ZASP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF4749 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pdlim2 PhenoGen
PROSITE LIM_DOMAIN_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LIM_DOMAIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART LIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50156 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A087WPL1_MOUSE UniProtKB/TrEMBL
  E9Q996_MOUSE UniProtKB/TrEMBL
  F7C957_MOUSE UniProtKB/TrEMBL
  PDLI2_MOUSE UniProtKB/Swiss-Prot
  Q3UUU5_MOUSE UniProtKB/TrEMBL
  Q8R1G6 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 Pdlim2  PDZ and LIM domain 2  4732462F18Rik  RIKEN cDNA 4732462F18 gene  Data merged from RGD:1609985 737654 PROVISIONAL