Trub1 (TruB pseudouridine (psi) synthase family member 1) - Rat Genome Database

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Gene: Trub1 (TruB pseudouridine (psi) synthase family member 1) Mus musculus
Analyze
Symbol: Trub1
Name: TruB pseudouridine (psi) synthase family member 1
RGD ID: 1552982
MGI Page MGI
Description: Predicted to enable pre-miRNA binding activity and pseudouridine synthase activity. Predicted to be involved in mRNA pseudouridine synthesis; positive regulation of pre-miRNA processing; and tRNA modification. Predicted to act upstream of or within mRNA processing and tRNA processing. Predicted to be located in cytosol and nucleus. Predicted to be active in mitochondrion. Is expressed in pectoral girdle and thoracic body wall musculature and testis. Orthologous to human TRUB1 (TruB pseudouridine synthase family member 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2610009I02Rik; 9030425C13Rik; AI448235; BB118943; C76870; MGC107612; probable tRNA pseudouridine synthase 1; pseudouridylate synthase TRUB1; psi55 synthase TRUB1; tRNA pseudouridine 55 synthase TRUB1; TruB pseudouridine (psi) synthase homolog 1; truB pseudouridine synthase homolog 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391957,441,323 - 57,479,437 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1957,441,344 - 57,479,437 (+)EnsemblGRCm39 Ensembl
GRCm381957,452,892 - 57,491,005 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1957,452,912 - 57,491,005 (+)EnsemblGRCm38mm10GRCm38
MGSCv371957,527,396 - 57,565,495 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361957,506,178 - 57,542,178 (+)NCBIMGSCv36mm8
Celera1959,646,757 - 59,685,056 (+)NCBICelera
Cytogenetic Map19D2NCBI
cM Map1952.25NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (ISO)
mitochondrion  (IBA)
nucleus  (ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073  
PMID:21267068   PMID:21873635   PMID:24194600   PMID:27568557  


Genomics

Comparative Map Data
Trub1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391957,441,323 - 57,479,437 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1957,441,344 - 57,479,437 (+)EnsemblGRCm39 Ensembl
GRCm381957,452,892 - 57,491,005 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1957,452,912 - 57,491,005 (+)EnsemblGRCm38mm10GRCm38
MGSCv371957,527,396 - 57,565,495 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361957,506,178 - 57,542,178 (+)NCBIMGSCv36mm8
Celera1959,646,757 - 59,685,056 (+)NCBICelera
Cytogenetic Map19D2NCBI
cM Map1952.25NCBI
TRUB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810114,938,195 - 114,977,676 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10114,938,195 - 114,977,676 (+)EnsemblGRCh38hg38GRCh38
GRCh3710116,697,954 - 116,737,435 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610116,687,942 - 116,727,429 (+)NCBINCBI36Build 36hg18NCBI36
Build 3410116,687,941 - 116,727,420NCBI
Celera10110,427,071 - 110,466,559 (+)NCBICelera
Cytogenetic Map10q25.3NCBI
HuRef10110,325,229 - 110,364,715 (+)NCBIHuRef
CHM1_110116,981,570 - 117,021,057 (+)NCBICHM1_1
T2T-CHM13v2.010115,832,499 - 115,871,976 (+)NCBIT2T-CHM13v2.0
Trub1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81266,518,510 - 266,559,633 (+)NCBIGRCr8
mRatBN7.21256,513,418 - 256,554,549 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1256,515,562 - 256,552,814 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1264,733,852 - 264,771,061 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01271,439,908 - 271,477,109 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01264,078,145 - 264,115,238 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01278,311,362 - 278,418,347 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1278,311,244 - 278,418,336 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01285,685,221 - 285,695,686 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01285,782,575 - 285,786,577 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41263,766,535 - 263,813,492 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11263,977,579 - 264,024,537 (+)NCBI
Celera1252,212,137 - 252,247,814 (+)NCBICelera
Cytogenetic Map1q55NCBI
Trub1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543119,840,662 - 19,877,930 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543119,840,827 - 19,877,930 (+)NCBIChiLan1.0ChiLan1.0
TRUB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28126,816,552 - 126,856,035 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110126,821,890 - 126,861,373 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010111,531,546 - 111,570,981 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110114,965,808 - 115,004,982 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10114,965,808 - 115,004,982 (+)Ensemblpanpan1.1panPan2
TRUB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12825,690,729 - 25,727,491 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2825,690,792 - 25,724,973 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2825,840,773 - 25,879,714 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02826,224,170 - 26,263,144 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2826,224,224 - 26,263,186 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12825,778,917 - 25,817,868 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02825,794,068 - 25,833,183 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02825,987,452 - 26,026,414 (+)NCBIUU_Cfam_GSD_1.0
Trub1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721320,393,602 - 20,425,937 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364865,135,398 - 5,164,901 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364865,135,379 - 5,166,858 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRUB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14125,262,177 - 125,304,484 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114125,262,142 - 125,328,604 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214136,384,484 - 136,450,389 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRUB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19107,809,018 - 107,848,839 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9107,809,073 - 107,848,257 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604869,043,240 - 69,082,435 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trub1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473731,638,322 - 31,676,712 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473731,634,767 - 31,676,652 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Trub1
1633 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1905
Count of miRNA genes:761
Interacting mature miRNAs:1000
Transcripts:ENSMUST00000026072, ENSMUST00000026073
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12790634Ebm1_mEpidermolysis Bullosa modifier 1 (mouse)192498843958988439Mouse
1301451Ath16_matherosclerosis 16 (mouse)Not determined192542691759427005Mouse
13506250Renmq1_mrenal mercury accumulation QTL 1 (mouse)192738559461385705Mouse
4141138Femwf11_mfemur work to failure 11 (mouse)Not determined2814034861420004Mouse
1300683Fembm7_mfemoral bone morphometry 7 (mouse)Not determined193014122461420004Mouse
1301942Pas13_mpulmonary adenoma susceptibility 13 (mouse)Not determined193014123161420004Mouse
1301410Cd8mts6_mCD8 memory T cell subset 6 (mouse)Not determined193014123161420004Mouse
1300856Nobq2_mNew Zealand obese QTL 2 (mouse)Not determined193089788061420004Mouse
1301741Lith2_mlithogenic gene 2 (mouse)Not determined193299215861420004Mouse
1301639Stnn_mstriatal neuron number (mouse)Not determined193395195261420004Mouse
4141019Tgq29_mtriglyceride QTL 29 (mouse)Not determined3459678661420004Mouse
1302170Tanidd1_mtally ho associated non-insulin dependednt diabetes mellitus 1 (mouse)Not determined193675259761420004Mouse
4141650Chldq9_mcholesterol and HDL QTL 9 (mouse)Not determined193788298261420004Mouse
1301466T2dm2_mtype 2 diabetes mellitus 2 (mouse)Not determined193837605061420004Mouse
1302104Lfp1_mlong free running period 1 (mouse)Not determined193918406461420004Mouse
10043896Bw21_mbody weight QTL 21 (mouse)Not determined193959606661420004Mouse
1300585Pgia12_mproteoglycan induced arthritis 12 (mouse)Not determined194258685961420004Mouse
11667075Led3_mlate embryonic death 3 (mouse)195108837859123872Mouse
11528548Sluc35_msusceptibility to lung cancer 35 (mouse)195537605059123872Mouse

Markers in Region
BB118943  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381957,485,974 - 57,486,111UniSTSGRCm38
MGSCv371957,560,464 - 57,560,601UniSTSGRCm37
Celera1959,680,025 - 59,680,162UniSTS
Cytogenetic Map19D2UniSTS
Whitehead/MRC_RH19608.13UniSTS
AI448235  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381957,488,519 - 57,488,731UniSTSGRCm38
MGSCv371957,563,009 - 57,563,221UniSTSGRCm37
Celera1959,682,570 - 59,682,782UniSTS
Cytogenetic Map19D2UniSTS
Whitehead/MRC_RH19603.89UniSTS
RH126048  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381957,488,696 - 57,488,902UniSTSGRCm38
MGSCv371957,563,186 - 57,563,392UniSTSGRCm37
Celera1959,682,747 - 59,682,953UniSTS
Cytogenetic Map19D2UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_028115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_029839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006527356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006527357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004940175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_386517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC140413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC039287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC054088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC089592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY094716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HB913345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HB931361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HC970754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HC988770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000026072   ⟹   ENSMUSP00000026072
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1957,441,366 - 57,474,634 (+)Ensembl
GRCm38.p6 Ensembl1957,452,934 - 57,486,202 (+)Ensembl
RefSeq Acc Id: ENSMUST00000026073   ⟹   ENSMUSP00000026073
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1957,441,344 - 57,479,437 (+)Ensembl
GRCm38.p6 Ensembl1957,452,912 - 57,491,005 (+)Ensembl
RefSeq Acc Id: ENSMUST00000237166
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1957,441,371 - 57,475,449 (+)Ensembl
GRCm38.p6 Ensembl1957,452,939 - 57,487,017 (+)Ensembl
RefSeq Acc Id: ENSMUST00000238107   ⟹   ENSMUSP00000157924
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1957,441,389 - 57,472,058 (+)Ensembl
GRCm38.p6 Ensembl1957,452,957 - 57,483,626 (+)Ensembl
RefSeq Acc Id: NM_028115   ⟹   NP_082391
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,441,338 - 57,479,437 (+)NCBI
GRCm381957,452,906 - 57,491,005 (+)NCBI
MGSCv371957,527,396 - 57,565,495 (+)RGD
Celera1959,646,757 - 59,685,056 (+)RGD
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_029839   ⟹   NP_084115
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,441,338 - 57,477,342 (+)NCBI
GRCm381957,452,906 - 57,488,910 (+)NCBI
MGSCv371957,527,396 - 57,565,495 (+)RGD
Celera1959,646,757 - 59,685,056 (+)RGD
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006527356   ⟹   XP_006527419
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,441,323 - 57,479,437 (+)NCBI
GRCm381957,452,892 - 57,491,005 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006527357   ⟹   XP_006527420
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,441,323 - 57,479,437 (+)NCBI
GRCm381957,452,892 - 57,491,005 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004940175
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,441,323 - 57,479,437 (+)NCBI
Sequence:
RefSeq Acc Id: XR_386517
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391957,441,323 - 57,479,437 (+)NCBI
GRCm381957,452,892 - 57,491,005 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_082391   ⟸   NM_028115
- Peptide Label: isoform 1
- UniProtKB: Q5EBH7 (UniProtKB/Swiss-Prot),   Q9D331 (UniProtKB/Swiss-Prot),   Q8C0D0 (UniProtKB/Swiss-Prot),   Q7TQK3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_084115   ⟸   NM_029839
- Peptide Label: isoform 2
- UniProtKB: Q3TPW0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006527419   ⟸   XM_006527356
- Peptide Label: isoform X1
- UniProtKB: Q7TQK3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006527420   ⟸   XM_006527357
- Peptide Label: isoform X2
- UniProtKB: Q3TPW0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000026072   ⟸   ENSMUST00000026072
RefSeq Acc Id: ENSMUSP00000026073   ⟸   ENSMUST00000026073
RefSeq Acc Id: ENSMUSP00000157924   ⟸   ENSMUST00000238107
Protein Domains
Pseudouridine synthase II N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8C0D0-F1-model_v2 AlphaFold Q8C0D0 1-338 view protein structure

Promoters
RGD ID:13679862
Promoter ID:EPDNEW_M24080
Type:multiple initiation site
Name:Trub1_1
Description:Mus musculus TruB pseudouridine synthase family member 1 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381957,452,939 - 57,452,999EPDNEW
RGD ID:6830498
Promoter ID:MM_KWN:27434
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   Brain,   ES_Cell,   Kidney,   Liver,   MEF_B4,   MEF_B6
Transcripts:NM_028115,   NM_029839,   UC008IAF.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361957,527,179 - 57,527,679 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1919383 AgrOrtholog
Ensembl Genes ENSMUSG00000025086 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000026072 ENTREZGENE
  ENSMUST00000026072.5 UniProtKB/Swiss-Prot
  ENSMUST00000026073 ENTREZGENE
  ENSMUST00000026073.14 UniProtKB/Swiss-Prot
  ENSMUST00000238107.2 UniProtKB/TrEMBL
Gene3D-CATH Pseudouridine synthase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro PsdUridine_synth_cat_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PsdUridine_synth_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  tRNA_psdUridine_synth_TruB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:72133 UniProtKB/Swiss-Prot
MGD MGI:1919383 ENTREZGENE
NCBI Gene 72133 ENTREZGENE
PANTHER PTHR13767 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRNA PSEUDOURIDINE SYNTHASE 1-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam TruB_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Trub1 PhenoGen
Superfamily-SCOP SSF55120 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A494BA34_MOUSE UniProtKB/TrEMBL
  Q3TPW0 ENTREZGENE, UniProtKB/TrEMBL
  Q5EBH7 ENTREZGENE
  Q7TQK3 ENTREZGENE, UniProtKB/TrEMBL
  Q8C0D0 ENTREZGENE
  Q9D331 ENTREZGENE
  TRUB1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q5EBH7 UniProtKB/Swiss-Prot
  Q9D331 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-14 Trub1  TruB pseudouridine (psi) synthase family member 1    TruB pseudouridine (psi) synthase homolog 1 (E. coli)  Symbol and/or name change 5135510 APPROVED