Calb2 (calbindin 2) - Rat Genome Database

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Gene: Calb2 (calbindin 2) Mus musculus
Analyze
Symbol: Calb2
Name: calbindin 2
RGD ID: 1552967
MGI Page MGI
Description: Enables calcium ion binding activity involved in regulation of presynaptic cytosolic calcium ion concentration. Predicted to be involved in regulation of long-term synaptic potentiation and regulation of presynaptic cytosolic calcium ion concentration. Located in gap junction. Is active in parallel fiber to Purkinje cell synapse. Is expressed in several structures, including alimentary system; nervous system; reproductive system; respiratory system; and sensory organ. Orthologous to human CALB2 (calbindin 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: C; cal; calretinin; CR
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398110,869,158 - 110,894,844 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8110,864,134 - 110,894,842 (-)EnsemblGRCm39 Ensembl
GRCm388110,142,526 - 110,168,212 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8110,137,502 - 110,168,210 (-)EnsemblGRCm38mm10GRCm38
MGSCv378112,666,438 - 112,692,106 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368113,031,667 - 113,057,335 (-)NCBIMGSCv36mm8
Celera8114,365,078 - 114,391,219 (-)NCBICelera
Cytogenetic Map8D3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(R)-lipoic acid  (ISO)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2-hydroxypropanoic acid  (ISO)
3-chloropropane-1,2-diol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methylcholanthrene  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (ISO)
aflatoxin B1  (ISO)
ammonium chloride  (ISO)
amphetamine  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
asbestos  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
Brodifacoum  (ISO)
butanal  (ISO)
Butylparaben  (ISO)
C60 fullerene  (ISO)
cadmium atom  (ISO)
carmustine  (ISO)
cefaloridine  (ISO)
CGP 52608  (ISO)
chlordecone  (EXP)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (ISO)
cyclosporin A  (ISO)
cytarabine  (ISO)
DDE  (ISO)
DDT  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (EXP,ISO)
flusilazole  (ISO)
flutamide  (ISO)
hydroquinone  (ISO)
indometacin  (ISO)
ketamine  (ISO)
L-ascorbic acid  (ISO)
lead diacetate  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
Licochalcone B  (ISO)
lipoic acid  (ISO)
methamphetamine  (ISO)
methylisothiazolinone  (ISO)
methylmercury chloride  (ISO)
methylparaben  (ISO)
N-Nitrosopyrrolidine  (ISO)
nickel atom  (ISO)
O-methyleugenol  (ISO)
oxaliplatin  (ISO)
panobinostat  (ISO)
PCB138  (EXP,ISO)
pentanal  (ISO)
picrotoxin  (ISO)
pirinixic acid  (EXP,ISO)
potassium dichromate  (EXP)
rac-lactic acid  (ISO)
raloxifene  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
simvastatin  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sterigmatocystin  (ISO)
temozolomide  (ISO)
toluene  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Neuropilin-2 regulates the development of selective cranial and sensory nerves and hippocampal mossy fiber projections. Chen H, etal., Neuron 2000 Jan;25(1):43-56.
2. Calretinin and CD34 immunoreactivity of the endometrial stroma in normal endometrium and change of the immunoreactivity in dysfunctional uterine bleeding with evidence of 'disordered endometrial stroma'. Mai KT, etal., Pathology. 2008 Aug;40(5):493-9.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. MGD IEA MGD IEA
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Cytosolic Ca2+ buffers. Schwaller B, Cold Spring Harb Perspect Biol. 2010 Nov;2(11):a004051. doi: 10.1101/cshperspect.a004051. Epub 2010 Oct 13.
Additional References at PubMed
PMID:2137249   PMID:7677260   PMID:7719127   PMID:7748558   PMID:7913715   PMID:7983242   PMID:8255773   PMID:8309546   PMID:8809809   PMID:9136766   PMID:9223338   PMID:9247335  
PMID:9252230   PMID:9294225   PMID:9387877   PMID:9698328   PMID:9728912   PMID:9735355   PMID:9736652   PMID:9742148   PMID:9742149   PMID:9758174   PMID:9831645   PMID:9853118  
PMID:9858718   PMID:9883721   PMID:9952412   PMID:10220453   PMID:10325223   PMID:10349636   PMID:10364557   PMID:10393115   PMID:10421573   PMID:10436162   PMID:10479068   PMID:10557207  
PMID:10572034   PMID:10624948   PMID:10631168   PMID:10639171   PMID:10648716   PMID:10716451   PMID:10742111   PMID:10767319   PMID:10771338   PMID:10804179   PMID:10920050   PMID:10934256  
PMID:10964956   PMID:11007897   PMID:11042159   PMID:11050238   PMID:11060228   PMID:11060242   PMID:11074448   PMID:11076861   PMID:11077193   PMID:11086988   PMID:11163262   PMID:11217851  
PMID:11239428   PMID:11344260   PMID:11404411   PMID:11493566   PMID:11498051   PMID:11516395   PMID:11517264   PMID:11784856   PMID:11804571   PMID:11923006   PMID:12086468   PMID:12091317  
PMID:12115690   PMID:12126880   PMID:12130660   PMID:12142028   PMID:12150774   PMID:12194867   PMID:12209836   PMID:12351730   PMID:12372286   PMID:12437591   PMID:12451131   PMID:12466851  
PMID:12477932   PMID:12485625   PMID:12561075   PMID:12574418   PMID:12588844   PMID:12619134   PMID:12620975   PMID:12642493   PMID:12644247   PMID:12654290   PMID:12668639   PMID:12727448  
PMID:12756176   PMID:12763586   PMID:12764029   PMID:12773624   PMID:12855770   PMID:12868005   PMID:12948657   PMID:14561859   PMID:14598259   PMID:14625556   PMID:14645517   PMID:14664811  
PMID:14681479   PMID:14704311   PMID:14724241   PMID:14975719   PMID:14998930   PMID:15063092   PMID:15079858   PMID:15084498   PMID:15121176   PMID:15188430   PMID:15253936   PMID:15328020  
PMID:15331402   PMID:15355314   PMID:15363390   PMID:15363391   PMID:15385616   PMID:15489334   PMID:15525772   PMID:15558732   PMID:15572149   PMID:15590913   PMID:15597051   PMID:15604100  
PMID:15611992   PMID:15617678   PMID:15733084   PMID:15813942   PMID:15836427   PMID:15837129   PMID:15843406   PMID:15899979   PMID:15902206   PMID:15930147   PMID:15939089   PMID:15972963  
PMID:15973681   PMID:16007083   PMID:16026391   PMID:16026466   PMID:16039563   PMID:16041369   PMID:16054763   PMID:16141072   PMID:16141073   PMID:16162939   PMID:16168404   PMID:16225856  
PMID:16284245   PMID:16330018   PMID:16343477   PMID:16352645   PMID:16387639   PMID:16452688   PMID:16476661   PMID:16493690   PMID:16495313   PMID:16499884   PMID:16514356   PMID:16518821  
PMID:16540585   PMID:16543460   PMID:16571605   PMID:16580148   PMID:16600913   PMID:16602821   PMID:16615895   PMID:16650609   PMID:16651659   PMID:16672052   PMID:16690048   PMID:16702404  
PMID:16707790   PMID:16715082   PMID:16716527   PMID:16766706   PMID:16766712   PMID:16790481   PMID:16807322   PMID:16819978   PMID:16828733   PMID:16870734   PMID:16873583   PMID:16880397  
PMID:16885222   PMID:16957075   PMID:16957084   PMID:16964252   PMID:17021036   PMID:17092954   PMID:17108173   PMID:17117441   PMID:17145500   PMID:17159139   PMID:17331196   PMID:17376969  
PMID:17392456   PMID:17409253   PMID:17460091   PMID:17462911   PMID:17554007   PMID:17596436   PMID:17601531   PMID:17634386   PMID:17663432   PMID:17693550   PMID:17721516   PMID:17724084  
PMID:17729288   PMID:17823936   PMID:17878174   PMID:17913789   PMID:17953485   PMID:17965053   PMID:18024993   PMID:18086886   PMID:18094249   PMID:18155191   PMID:18171687   PMID:18199763  
PMID:18215621   PMID:18216176   PMID:18224708   PMID:18260139   PMID:18265020   PMID:18287934   PMID:18331873   PMID:18359574   PMID:18367596   PMID:18371392   PMID:18385258   PMID:18425115  
PMID:18430798   PMID:18448089   PMID:18448648   PMID:18459960   PMID:18469343   PMID:18501628   PMID:18506028   PMID:18509043   PMID:18521945   PMID:18548485   PMID:18603407   PMID:18614579  
PMID:18620078   PMID:18626943   PMID:18719084   PMID:18729224   PMID:18753373   PMID:18786638   PMID:18787067   PMID:18794345   PMID:18832390   PMID:18997113   PMID:19020026   PMID:19037081  
PMID:19046377   PMID:19074032   PMID:19081073   PMID:19088125   PMID:19126596   PMID:19146812   PMID:19185337   PMID:19208224   PMID:19217926   PMID:19244520   PMID:19287374   PMID:19288186  
PMID:19332558   PMID:19339595   PMID:19373512   PMID:19383784   PMID:19389353   PMID:19398581   PMID:19403657   PMID:19423573   PMID:19439493   PMID:19490090   PMID:19519627   PMID:19554387  
PMID:19571125   PMID:19633665   PMID:19641107   PMID:19643174   PMID:19657336   PMID:19662096   PMID:19692620   PMID:19705444   PMID:19709629   PMID:19710317   PMID:19712103   PMID:19805388  
PMID:19828801   PMID:19846726   PMID:19855026   PMID:19859539   PMID:19892785   PMID:19895859   PMID:19923274   PMID:19924828   PMID:19936227   PMID:19948250   PMID:19948886   PMID:19961580  
PMID:19968972   PMID:20034568   PMID:20040495   PMID:20058045   PMID:20159447   PMID:20181579   PMID:20237275   PMID:20308569   PMID:20346763   PMID:20364144   PMID:20372082   PMID:20392943  
PMID:20392955   PMID:20410112   PMID:20431123   PMID:20445055   PMID:20484636   PMID:20484647   PMID:20610746   PMID:20639873   PMID:20653034   PMID:20685998   PMID:20691752   PMID:20713522  
PMID:20798046   PMID:20808958   PMID:20826655   PMID:20856818   PMID:20875817   PMID:21087508   PMID:21114965   PMID:21125652   PMID:21147077   PMID:21148012   PMID:21185282   PMID:21220099  
PMID:21307253   PMID:21325536   PMID:21338885   PMID:21368052   PMID:21382368   PMID:21430164   PMID:21451052   PMID:21452232   PMID:21460838   PMID:21466690   PMID:21467208   PMID:21471366  
PMID:21491429   PMID:21525288   PMID:21545793   PMID:21562282   PMID:21592321   PMID:21648018   PMID:21658586   PMID:21685723   PMID:21690261   PMID:21697387   PMID:21713770   PMID:21737879  
PMID:21776083   PMID:21826226   PMID:21835343   PMID:21849546   PMID:21856951   PMID:21858141   PMID:21865321   PMID:21873635   PMID:21903076   PMID:21943598   PMID:21962519   PMID:21966449  
PMID:21976438   PMID:21989918   PMID:22020803   PMID:22021915   PMID:22028625   PMID:22056141   PMID:22090484   PMID:22151329   PMID:22222602   PMID:22226504   PMID:22235191   PMID:22248045  
PMID:22281059   PMID:22345400   PMID:22351047   PMID:22365545   PMID:22370000   PMID:22371696   PMID:22378868   PMID:22421355   PMID:22440796   PMID:22442076   PMID:22479201   PMID:22491411  
PMID:22492355   PMID:22496522   PMID:22536174   PMID:22578469   PMID:22586092   PMID:22689450   PMID:22710612   PMID:22745484   PMID:22772332   PMID:22791192   PMID:22806269   PMID:22820053  
PMID:22837015   PMID:22864477   PMID:22891683   PMID:22898830   PMID:22906231   PMID:22923088   PMID:22982106   PMID:23033479   PMID:23042737   PMID:23042739   PMID:23064108   PMID:23091025  
PMID:23142661   PMID:23172916   PMID:23197722   PMID:23217170   PMID:23273895   PMID:23301081   PMID:23312517   PMID:23364326   PMID:23395374   PMID:23396189   PMID:23408898   PMID:23420014  
PMID:23436026   PMID:23451234   PMID:23478408   PMID:23537777   PMID:23637192   PMID:23643936   PMID:23658181   PMID:23658188   PMID:23673330   PMID:23684982   PMID:23714736   PMID:23727838  
PMID:23817546   PMID:23863479   PMID:23884928   PMID:23894587   PMID:23912123   PMID:23931996   PMID:24027281   PMID:24036464   PMID:24056077   PMID:24066094   PMID:24096375   PMID:24125957  
PMID:24134921   PMID:24142862   PMID:24154525   PMID:24209760   PMID:24333658   PMID:24351932   PMID:24403153   PMID:24453340   PMID:24463367   PMID:24487590   PMID:24496615   PMID:24500610  
PMID:24507192   PMID:24512632   PMID:24550175   PMID:24559672   PMID:24626607   PMID:24671999   PMID:24739528   PMID:24741035   PMID:24742460   PMID:24781987   PMID:24799694   PMID:24899708  
PMID:24931760   PMID:24952961   PMID:24969029   PMID:24983448   PMID:25071457   PMID:25085881   PMID:25113559   PMID:25147501   PMID:25209608   PMID:25252086   PMID:25331604   PMID:25336744  
PMID:25381007   PMID:25404384   PMID:25446980   PMID:25467445   PMID:25467980   PMID:25535838   PMID:25574476   PMID:25631876   PMID:25691754   PMID:25691858   PMID:25698753   PMID:25966682  
PMID:25993409   PMID:25995483   PMID:26030886   PMID:26060116   PMID:26071364   PMID:26073142   PMID:26079645   PMID:26156989   PMID:26160903   PMID:26287463   PMID:26291162   PMID:26319231  
PMID:26321636   PMID:26377473   PMID:26391921   PMID:26395878   PMID:26397040   PMID:26449264   PMID:26509897   PMID:26579598   PMID:26620267   PMID:26659141   PMID:26671461   PMID:26695618  
PMID:26701169   PMID:26718312   PMID:26727548   PMID:26733804   PMID:26795843   PMID:26813976   PMID:26949938   PMID:26961948   PMID:26964886   PMID:27111087   PMID:27170656   PMID:27210758  
PMID:27224923   PMID:27384060   PMID:27452460   PMID:27578777   PMID:27618674   PMID:27713499   PMID:27878595   PMID:27912058   PMID:27934886   PMID:28009292   PMID:28066179   PMID:28199486  
PMID:28199840   PMID:28228269   PMID:28294153   PMID:28475893   PMID:28579317   PMID:28687665   PMID:28760865   PMID:28766996   PMID:28814342   PMID:28842412   PMID:28891466   PMID:28910624  
PMID:28912695   PMID:28942923   PMID:28981617   PMID:28985566   PMID:29043563   PMID:29045729   PMID:29053761   PMID:29130968   PMID:29161354   PMID:29175956   PMID:29184203   PMID:29218729  
PMID:29258872   PMID:29311744   PMID:29326172   PMID:29358049   PMID:29358640   PMID:29380551   PMID:29394901   PMID:29405286   PMID:29424692   PMID:29488136   PMID:29507213   PMID:29518331  
PMID:29525572   PMID:29546593   PMID:29659809   PMID:29716946   PMID:29716957   PMID:29743498   PMID:29748916   PMID:29869046   PMID:29878134   PMID:29915195   PMID:29925844   PMID:30015247  
PMID:30078709   PMID:30093671   PMID:30135315   PMID:30146317   PMID:30179592   PMID:30208054   PMID:30269988   PMID:30326149   PMID:30344048   PMID:30348983   PMID:30349105   PMID:30377227  
PMID:30445565   PMID:30455179   PMID:30472119   PMID:30485816   PMID:30523065   PMID:30553791   PMID:30635555   PMID:30861578   PMID:30998504   PMID:31001083   PMID:31002540   PMID:31070778  
PMID:31079925   PMID:31086189   PMID:31087513   PMID:31097625   PMID:31138815   PMID:31139063   PMID:31145926   PMID:31152445   PMID:31200100   PMID:31282864   PMID:31351040   PMID:31358509  
PMID:31371378   PMID:31390558   PMID:31407772   PMID:31425583   PMID:31430342   PMID:31488566   PMID:31493975   PMID:31575647   PMID:31663646   PMID:31665922   PMID:31666704   PMID:31678344  
PMID:31713514   PMID:31798410   PMID:31845734   PMID:31850343   PMID:31868583   PMID:32012381   PMID:32017713   PMID:32049024   PMID:32071204   PMID:32106289   PMID:32123907   PMID:32253238  
PMID:32325033   PMID:32350587   PMID:32420617   PMID:32423230   PMID:32571922   PMID:32675174   PMID:32856318   PMID:32880858   PMID:32982660   PMID:32994318   PMID:33020269   PMID:33065009  
PMID:33181065   PMID:33181066   PMID:33184213   PMID:33186546   PMID:33240055   PMID:33288908   PMID:33462112   PMID:33488348   PMID:33589589   PMID:33649316   PMID:33845857   PMID:33963279  
PMID:34004146   PMID:34013328   PMID:34095148   PMID:34124068   PMID:34133916   PMID:34184026   PMID:34193558   PMID:34272903   PMID:34301831   PMID:34321999   PMID:34339499   PMID:34402594  
PMID:34516764   PMID:34518365   PMID:34616071   PMID:34644112   PMID:35020876   PMID:35132995   PMID:35252209   PMID:35317196   PMID:35342336   PMID:35494226   PMID:35544642   PMID:35602553  
PMID:35790771   PMID:35793630   PMID:35926459  


Genomics

Comparative Map Data
Calb2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398110,869,158 - 110,894,844 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8110,864,134 - 110,894,842 (-)EnsemblGRCm39 Ensembl
GRCm388110,142,526 - 110,168,212 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8110,137,502 - 110,168,210 (-)EnsemblGRCm38mm10GRCm38
MGSCv378112,666,438 - 112,692,106 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368113,031,667 - 113,057,335 (-)NCBIMGSCv36mm8
Celera8114,365,078 - 114,391,219 (-)NCBICelera
Cytogenetic Map8D3NCBI
CALB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381671,358,723 - 71,390,433 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1671,358,713 - 71,390,436 (+)EnsemblGRCh38hg38GRCh38
GRCh371671,392,626 - 71,424,336 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361669,950,127 - 69,981,842 (+)NCBINCBI36Build 36hg18NCBI36
Build 341669,950,126 - 69,981,836NCBI
Celera1655,708,128 - 55,740,202 (+)NCBICelera
Cytogenetic Map16q22.2NCBI
HuRef1657,186,719 - 57,192,385 (+)NCBIHuRef
HuRef1657,160,840 - 57,186,546 (+)NCBIHuRef
CHM1_11672,805,453 - 72,837,193 (+)NCBICHM1_1
T2T-CHM13v2.01677,174,637 - 77,207,658 (+)NCBIT2T-CHM13v2.0
Calb2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21938,114,435 - 38,141,438 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1938,114,424 - 38,141,438 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1944,920,886 - 44,947,919 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01945,574,230 - 45,601,269 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01947,883,801 - 47,910,840 (-)NCBIRnor_WKY
Rnor_6.01941,482,743 - 41,509,617 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1941,482,728 - 41,509,658 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01952,310,641 - 52,337,700 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41940,023,072 - 40,051,150 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11940,027,952 - 40,056,031 (-)NCBI
Celera1937,512,226 - 37,538,062 (-)NCBICelera
Cytogenetic Map19q12NCBI
Calb2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554844,075,067 - 4,103,559 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554844,075,103 - 4,103,509 (+)NCBIChiLan1.0ChiLan1.0
CALB2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11671,195,770 - 71,227,937 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1671,195,770 - 71,227,937 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01653,620,317 - 53,653,372 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
CALB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1577,178,158 - 77,205,663 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl577,177,951 - 77,205,671 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha577,139,985 - 77,167,208 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0577,616,925 - 77,644,159 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl577,616,951 - 77,644,096 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1577,437,354 - 77,464,585 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0577,260,506 - 77,287,715 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0577,759,356 - 77,786,581 (+)NCBIUU_Cfam_GSD_1.0
Calb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934937,217,095 - 37,244,688 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493647522,344,416 - 22,372,015 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CALB2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl614,391,857 - 14,420,663 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1614,392,220 - 14,420,663 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2613,904,114 - 13,933,267 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CALB2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1554,503,635 - 54,538,304 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl554,504,082 - 54,538,441 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604717,312,991 - 17,345,343 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Calb2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474613,548,540 - 13,578,501 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474613,549,339 - 13,577,929 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:329
Count of miRNA genes:225
Interacting mature miRNAs:261
Transcripts:ENSMUST00000003754
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832506572117965439Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined835109930115563747Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871740461124622354Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71740461124622354Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)874126628126826739Mouse
1301099Cbm2_mcerebellum weight 2 (mouse)Not determined879245241113245331Mouse
1301581Char2_mP. chabaudi malaria resistance QTL 2 (mouse)Not determined879808806113809031Mouse
10755530Wbc2_mwhite blood cell count 2 (mouse)881819296115819296Mouse
10755519Wbc1_mwhite blood cell count 1 (mouse)882345783116345783Mouse
1301766Desp1_mdespair 1 (mouse)Not determined885486208119486373Mouse
1302049Heal1_mwound healing/regeneration 1 (mouse)Not determined886443553120443701Mouse
1301253Skmw2_mskeletal muscle weight 2 (mouse)Not determined886443553120443701Mouse
10045619Heal14_mwound healing/regeneration 14 (mouse)Not determined886443553120443701Mouse
27226796Scvln16_msacral vertebrae length 2, 16 week (mouse)889726628130027694Mouse
1357494Obsty2_mobesity 2 (mouse)Not determined896245241129745061Mouse
12880431Fgf23lq2_mFGF23 serum level QTL 2 (mouse)897626632130127694Mouse
11252141Fdr2_mfat response to dietary restriction 2 (mouse)898390634130127694Mouse
1301481Lith11_mlithogenic gene 11 (mouse)Not determined898563635130127694Mouse
1302105Im1_mImmunoregulatory 1 (mouse)Not determined899828531130127694Mouse
1301080Sluc9_msusceptibility to lung cancer 9 (mouse)Not determined899828531130127694Mouse
4141435Fbtq3_mfemoral bone trait QTL 3 (mouse)Not determined8100965309130127694Mouse
1300560Tgl1_mtriglyceride level 1 (mouse)Not determined8102486208111650036Mouse
1300681Pgia22_mproteoglycan induced arthritis 22 (mouse)Not determined8102486208116025457Mouse
1301316Dntcs1_mdental caries susceptibility 1 (mouse)Not determined8103443553127781786Mouse
11532691Sluc38_msusceptibility to lung cancer 38 (mouse)8105033977130127694Mouse
11532692Sluc38a_msusceptibility to lung cancer 38a (mouse)8105033977130127694Mouse
14746994Manh65_mmandible shape 65 (mouse)8106489629130127694Mouse
36049780Ars12_mantibody response to SARS-CoV 12, 4 days post-rechallenge, IgM (mouse)8109426632113826632Mouse
36049781Arc1_mantibody response to CHIKV 1, day 7, IgG (mouse)8109426632113826632Mouse
36049782Arc2_mantibody response to CHIKV 2, day 7, IgM (mouse)8109426632113826632Mouse
36049783Arc3_mantibody response to CHIKV 3, day 7, FRNT50 (mouse)8109426632113826632Mouse
35673316Ari3_mantibody response to influenza 3, day 15, IgM (mouse)8109426632113826632Mouse
10412273Fcd1_mfunctional capillary density 1 (mouse)Not determined8110415083130127694Mouse
10412274Leci1_mleukocyte endothelial cell interactions 1 (mouse)Not determined8110415083130127694Mouse

Markers in Region
X73985  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388110,142,812 - 110,142,950UniSTSGRCm38
MGSCv378112,666,712 - 112,666,850UniSTSGRCm37
Celera8114,365,352 - 114,365,490UniSTS
Cytogenetic Map8E1UniSTS
Whitehead/MRC_RH81292.4UniSTS
Calb2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv378112,666,500 - 112,666,705UniSTSGRCm37
Celera8114,365,140 - 114,365,345UniSTS
Cytogenetic Map8E1UniSTS
cM Map8 UniSTS
RH138609  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388110,142,630 - 110,142,811UniSTSGRCm38
MGSCv378112,666,530 - 112,666,711UniSTSGRCm37
Celera8114,365,170 - 114,365,351UniSTS
Cytogenetic Map8E1UniSTS
Calb2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388110,142,600 - 110,142,805UniSTSGRCm38
MGSCv378112,666,500 - 112,666,705UniSTSGRCm37
Celera8114,365,140 - 114,365,345UniSTS
Cytogenetic Map8E1UniSTS
cM Map8 UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000003754   ⟹   ENSMUSP00000003754
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8110,869,170 - 110,894,838 (-)Ensembl
GRCm38.p6 Ensembl8110,142,538 - 110,168,206 (-)Ensembl
RefSeq Acc Id: ENSMUST00000212297   ⟹   ENSMUSP00000148680
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8110,864,134 - 110,894,842 (-)Ensembl
GRCm38.p6 Ensembl8110,137,502 - 110,168,210 (-)Ensembl
RefSeq Acc Id: NM_001368293   ⟹   NP_001355222
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398110,869,158 - 110,894,844 (-)NCBI
GRCm388110,142,526 - 110,168,212 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001368294   ⟹   NP_001355223
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398110,869,158 - 110,894,844 (-)NCBI
GRCm388110,142,526 - 110,168,212 (-)NCBI
Sequence:
RefSeq Acc Id: NM_007586   ⟹   NP_031612
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398110,869,158 - 110,894,844 (-)NCBI
GRCm388110,142,526 - 110,168,212 (-)NCBI
MGSCv378112,666,438 - 112,692,106 (-)RGD
Celera8114,365,078 - 114,391,219 (-)RGD
cM Map8 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_031612   ⟸   NM_007586
- Peptide Label: isoform 1
- UniProtKB: Q9JM81 (UniProtKB/Swiss-Prot),   Q08331 (UniProtKB/Swiss-Prot),   A0A6P5QAG5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001355223   ⟸   NM_001368294
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001355222   ⟸   NM_001368293
- Peptide Label: isoform 2
RefSeq Acc Id: ENSMUSP00000003754   ⟸   ENSMUST00000003754
RefSeq Acc Id: ENSMUSP00000148680   ⟸   ENSMUST00000212297
Protein Domains
EF-hand

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q08331-F1-model_v2 AlphaFold Q08331 1-271 view protein structure

Promoters
RGD ID:8668261
Promoter ID:EPDNEW_M12162
Type:multiple initiation site
Name:Calb2_1
Description:Mus musculus calbindin 2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm388110,168,212 - 110,168,272EPDNEW
RGD ID:6842877
Promoter ID:MM_KWN:55728
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:NM_007586,   UC009NKN.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv368112,691,751 - 112,692,251 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:101914 AgrOrtholog
Ensembl Genes ENSMUSG00000003657 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000003754 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000148680 ENTREZGENE
  ENSMUSP00000148680.2 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000003754 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000212297 ENTREZGENE
  ENSMUST00000212297.2 UniProtKB/TrEMBL
InterPro CALB2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12308 UniProtKB/Swiss-Prot
MGD MGI:101914 ENTREZGENE
NCBI Gene 12308 ENTREZGENE
PANTHER PTHR19972:SF4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam EF-hand_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF-hand_7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Calb2 PhenoGen
PROSITE EF_HAND_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART EFh UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A6P5QAG5 ENTREZGENE
  CALB2_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q8CCS7_MOUSE UniProtKB/TrEMBL
  Q9JM81 ENTREZGENE
UniProt Secondary Q60964 UniProtKB/Swiss-Prot
  Q9JM81 UniProtKB/Swiss-Prot