Cct2 (chaperonin containing Tcp1, subunit 2 (beta)) - Rat Genome Database

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Gene: Cct2 (chaperonin containing Tcp1, subunit 2 (beta)) Mus musculus
Analyze
Symbol: Cct2
Name: chaperonin containing Tcp1, subunit 2 (beta)
RGD ID: 1552962
MGI Page MGI
Description: Predicted to enable protein folding chaperone; ubiquitin protein ligase binding activity; and unfolded protein binding activity. Acts upstream of or within binding activity of sperm to zona pellucida and toxin transport. Located in cell body. Part of chaperonin-containing T-complex and zona pellucida receptor complex. Is expressed in brain; nasal process; neural tube; somite; and telencephalon. Orthologous to human CCT2 (chaperonin containing TCP1 subunit 2); INTERACTS WITH 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 1,2-dimethylhydrazine; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: CCT-beta; Cctb; chaperonin subunit 2 (beta); T-complex protein 1 subunit beta; TCP-1-beta
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910116,886,902 - 116,899,757 (-)NCBIGRCm39mm39
GRCm39 Ensembl10116,886,906 - 116,899,719 (-)Ensembl
GRCm3810117,050,997 - 117,063,852 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10117,051,001 - 117,063,814 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710116,488,054 - 116,500,870 (-)NCBIGRCm37mm9NCBIm37
MGSCv3610116,455,109 - 116,467,875 (-)NCBImm8
Celera10118,994,151 - 119,006,966 (-)NCBICelera
Cytogenetic Map10D2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
osteoporosis  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (EXP,ISO)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
1H-pyrazole  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
3-chloropropane-1,2-diol  (ISO)
4-amino-2,6-dinitrotoluene  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
amphetamine  (EXP)
arsenous acid  (ISO)
artesunate  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (ISO)
cadmium dichloride  (EXP,ISO)
carbon nanotube  (EXP)
ceruletide  (ISO)
chloropicrin  (ISO)
chromium(6+)  (EXP)
clobetasol  (EXP)
clofibrate  (EXP)
clofibric acid  (ISO)
cobalt dichloride  (ISO)
cocaine  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
diazinon  (ISO)
dicrotophos  (ISO)
diethylstilbestrol  (ISO)
dioxygen  (EXP)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP,ISO)
finasteride  (ISO)
flutamide  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
gentamycin  (ISO)
hyaluronic acid  (ISO)
hydralazine  (ISO)
hydrogen peroxide  (EXP,ISO)
ivermectin  (ISO)
lead(II) chloride  (ISO)
menadione  (ISO)
methamphetamine  (ISO)
N-methyl-N'-nitro-N-nitrosoguanidine  (EXP)
N-nitrosodiethylamine  (ISO)
N-nitrosomorpholine  (ISO)
naphthalene  (EXP)
nefazodone  (ISO)
nickel dichloride  (ISO)
nimesulide  (ISO)
oxaliplatin  (ISO)
p-menthan-3-ol  (ISO)
paracetamol  (EXP)
PhIP  (ISO)
pirinixic acid  (EXP)
potassium dichromate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
propiconazole  (EXP)
resveratrol  (ISO)
silicon dioxide  (ISO)
sodium dichromate  (ISO)
sulforaphane  (EXP,ISO)
sunitinib  (ISO)
tamoxifen  (EXP)
temozolomide  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (ISO)
topotecan  (ISO)
trimellitic anhydride  (EXP)
triptonide  (EXP)
valdecoxib  (ISO)
valproic acid  (EXP,ISO)

References

Additional References at PubMed
PMID:7828721   PMID:9250675   PMID:10349636   PMID:10748209   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:15489334  
PMID:15782199   PMID:16107646   PMID:16141072   PMID:16141073   PMID:17309103   PMID:17634366   PMID:18448421   PMID:18799693   PMID:19423573   PMID:20360068   PMID:21267068   PMID:21873635  
PMID:21880732   PMID:22083510   PMID:22144988   PMID:22673621   PMID:23665500   PMID:23716698   PMID:24457600   PMID:24788519   PMID:26496610   PMID:26584622   PMID:27889896   PMID:28378742  
PMID:30068389   PMID:30333137   PMID:30457570   PMID:30550785   PMID:30562941   PMID:30595499   PMID:30713523   PMID:32325033  


Genomics

Comparative Map Data
Cct2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910116,886,902 - 116,899,757 (-)NCBIGRCm39mm39
GRCm39 Ensembl10116,886,906 - 116,899,719 (-)Ensembl
GRCm3810117,050,997 - 117,063,852 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10117,051,001 - 117,063,814 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710116,488,054 - 116,500,870 (-)NCBIGRCm37mm9NCBIm37
MGSCv3610116,455,109 - 116,467,875 (-)NCBImm8
Celera10118,994,151 - 119,006,966 (-)NCBICelera
Cytogenetic Map10D2NCBI
CCT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1269,585,426 - 69,601,570 (+)EnsemblGRCh38hg38GRCh38
GRCh381269,585,459 - 69,601,570 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371269,979,239 - 69,995,350 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361268,265,475 - 68,281,624 (+)NCBINCBI36hg18NCBI36
Build 341268,265,474 - 68,281,624NCBI
Celera1269,642,857 - 69,659,010 (+)NCBI
Cytogenetic Map12q15NCBI
HuRef1267,028,675 - 67,044,820 (+)NCBIHuRef
CHM1_11269,947,631 - 69,963,780 (+)NCBICHM1_1
Cct2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2752,692,725 - 52,705,478 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl752,692,725 - 52,706,944 (-)Ensembl
Rnor_6.0760,106,532 - 60,122,779 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl760,109,974 - 60,122,805 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0760,106,598 - 60,122,867 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4756,391,341 - 56,404,084 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1756,412,071 - 56,424,814 (-)NCBI
Celera749,468,323 - 49,481,066 (-)NCBICelera
Cytogenetic Map7q22NCBI
Cct2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554059,892,116 - 9,904,407 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554059,892,089 - 9,904,407 (+)NCBIChiLan1.0ChiLan1.0
CCT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11269,883,710 - 69,898,671 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1269,883,710 - 69,898,671 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01267,113,221 - 67,128,159 (+)NCBIMhudiblu_PPA_v0panPan3
CCT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11011,560,287 - 11,586,559 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1011,560,396 - 11,578,433 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1011,492,095 - 11,518,353 (+)NCBI
ROS_Cfam_1.01011,683,661 - 11,709,923 (+)NCBI
UMICH_Zoey_3.11011,550,671 - 11,576,938 (+)NCBI
UNSW_CanFamBas_1.01011,797,739 - 11,824,127 (+)NCBI
UU_Cfam_GSD_1.01011,920,916 - 11,939,358 (+)NCBI
Cct2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494546,673,102 - 46,693,918 (-)NCBI
SpeTri2.0NW_0049365457,416,257 - 7,436,024 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl533,858,572 - 34,033,939 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1533,858,514 - 33,873,596 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2536,457,610 - 36,471,587 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11165,213,992 - 65,230,318 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1165,214,060 - 65,230,379 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037180,459,300 - 180,475,791 (-)NCBIVero_WHO_p1.0
Cct2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475028,202,524 - 28,217,223 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
WI-19751  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810117,051,023 - 117,051,276UniSTSGRCm38
MGSCv3710116,488,079 - 116,488,332UniSTSGRCm37
Celera10118,994,176 - 118,994,429UniSTS
Cytogenetic Map10D2UniSTS
RH143421  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810117,057,237 - 117,057,897UniSTSGRCm38
MGSCv3710116,494,293 - 116,494,953UniSTSGRCm37
Celera10119,000,390 - 119,001,050UniSTS
Cytogenetic Map10D2UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018383585125739363Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1019000000129800000Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024800000121200000Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039300000129800000Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039300000129800000Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045600000120800000Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059500000122500000Mouse
13208560Wght9_mweight 9 (mouse)1060000000121000000Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1068000000125000000Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069900000132500000Mouse
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1074151384125680038Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1074151384125680038Mouse
4141054mwfh_mmodifier of white forlock hypopigmentation (mouse)Not determined83181141117181274Mouse
1357779Tesq3_mtestis weight QTL 3 (mouse)Not determined1084243786122205623Mouse
4141479W10q8_mweight 10 weeks QTL 8 (mouse)Not determined84243786122205623Mouse
4141387Lgaq5_mlate growth adjusted QTL 5 (mouse)Not determined84243786122205623Mouse
4142496W6q8_mweight 6 weeks QTL 8 (mouse)Not determined84243786122205623Mouse
4142365Egq9_mearly growth QTL 9 (mouse)Not determined84243786122205623Mouse
1357594Estoq3_membryo survival total QTL 3 (mouse)Not determined1084243786122205623Mouse
1357622Espq3_membryo survival preimplantation QTL 3 (mouse)Not determined1084243786122205623Mouse
1357638Cia29_mcollagen induced arthritis 29 (mouse)Not determined1085619118118661448Mouse
1300797Sluc22_msusceptibility to lung cancer 22 (mouse)Not determined1086877747120877895Mouse
1301520Uvbi1_mUVB induced immunosuppression 1 (mouse)Not determined1087073224121073368Mouse
1300908Insq4_minsulin QTL 4 (mouse)Not determined1087073224121073368Mouse
1300921Skl4_mskeletal size (tail length) 4 (mouse)Not determined1088252393122252530Mouse
4142386Tgq20_mtriglyceride QTL 20 (mouse)Not determined89000595123000595Mouse
1301758Fcsa3_mfemoral cross-sectional area 3 (mouse)Not determined1090091790124091893Mouse
11039516Ltpr5_mLeishmania tropica response 5 (mouse)1090671039125739363Mouse
13208554Lgth11_mbody length 11 (mouse)1091000000121000000Mouse
4142461Bmd25_mbone mineral density 25 (mouse)Not determined1097381196130694993Mouse
1357544Vtbt10_mvertebral trabecular bone trait 10 (mouse)Not determined1097381196130694993Mouse
11533919Mvb4_mmodifier of vibrator 4 (mouse)397381196130694993Mouse
11533921Mvb2_mmodifier of vibrator 2 (mouse)1097381196130694993Mouse
12880413V125Dq9_mvitamin D active form serum level QTL 9 (mouse)1097700000130694993Mouse
4141402T2dm1sa_mtype 2 diabetes mellitus 1 in SMXA RI mice (mouse)Not determined97922739130694993Mouse
11040593Lmr5e_mleishmaniasis resistance 5e (mouse)1099384730130694993Mouse
11040595Lmr5c_mleishmaniasis resistance 5c (mouse)1099384730130694993Mouse
11040597Lmr5a_mleishmaniasis resistance 5a (mouse)1099384730130694993Mouse
1301968Estq4_mestradiol regulated response QTL 4 (mouse)Not determined10101150611130694993Mouse
1357744Cfbw4_mcystic fibrosis body weight 4 (mouse)Not determined10101150611130694993Mouse
1301901Im5_mimmunoregulatory 5 (mouse)Not determined10101661259130694993Mouse
4141361Cfmq3_mcystic fibrosis modifier QTL 3 (mouse)Not determined10101661259130694993Mouse
1300678Leg2_mlongevity extending gene 2 (mouse)Not determined10102671003130694993Mouse
27226725Tibw1_mtibia width 1, proximal, 5 week (mouse)10102900000123400000Mouse
1301895Exq1_mexploratory and excitability QTL 1 (mouse)Not determined10103011947130694993Mouse
14696727Kidrq2_mkidney weight, right QTL 2 (mouse)10103066603130694993Mouse
4141007Obrq10_mobesity resistance QTL 10 (mouse)Not determined103407822130694993Mouse
4141487Tgq21_mtriglyceride QTL 21 (mouse)Not determined104274116130694993Mouse
14746996Manh69_mmandible shape 69 (mouse)10104927733130694993Mouse
1357482Nhdlq4_mnon-HDL QTL 4 (mouse)Not determined10105205399130694993Mouse
1300679Nociq2_mnociceptive sensitivity inflammatory QTL 2 (mouse)Not determined10105205399130694993Mouse
1302200Sle12_msystematic lupus erythematosus susceptibility 12 (mouse)Not determined10105205399130694993Mouse
4141269Ipng2_mimprinted postnatal growth 2 (mouse)Not determined105252393118661448Mouse
11040594Lmr5f_mleishmaniasis resistance 5f (mouse)10105343808130694993Mouse
11040596Lmr5d_mleishmaniasis resistance 5d (mouse)10105343808130694993Mouse
11040598Lmr5b_mleishmaniasis resistance 5b (mouse)10105343808130694993Mouse
4142089Obrq9_mobesity resistance QTL 9 (mouse)Not determined108680038130694993Mouse
4141153Ltgq2_mliver triglyceride QTL 2 (mouse)Not determined108680038130694993Mouse
11039496Ltpr5b_mLeishmania tropica response 5b (mouse)10108739225130694993Mouse
11041664Lmr25_mleishmaniasis resistance 25 (mouse)10108739225130694993Mouse
11049563Lmr25a_mleishmaniasis resistance 25a (mouse)10108739225130694993Mouse
11049570Lmr25b_mleishmaniasis resistance 25b (mouse)10108739225130694993Mouse
27226722Tibw7_mtibia width 7, proximal, 16 week (mouse)10108800000125600000Mouse
27095902Scvln11_msacral vertebrae length 2, 10 week (mouse)10110200000125600000Mouse
11353822Insq12_minsulin QTL 12 (mouse)10110617486125680038Mouse
11353823Homaq2_mhomeostatic model assessment QTL 2 (mouse)10110617486125680038Mouse
10412078Hylaq3_mHyperlocomotor activity related QTL 3 (mouse)Not determined10111732321118150744Mouse
26884391Skwq11_mskull length QTL 11, 16 week (mouse)10113700000121800000Mouse
26884433Zlq2_mzygomatic length QTL 2, 5 week (mouse)10113700000125900000Mouse
4141242Psrs2_mpsoriasis susceptibility 2 (mouse)Not determined10114381196118661448Mouse
26884383Bzwq3_mbi-zygomatic width QTL 3, 5 week (mouse)10114400000122900000Mouse
13506931Recrq11_mrecombination rate in male meiosis QTL 11 (mouse)10114500000123800000Mouse
26884377Skwq3_mskull length QTL 3, 5 week (mouse)10114800000122900000Mouse
1300796Lmr5_mleishmaniasis resistance 5 (mouse)Not determined10116384730122343923Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:74
Count of miRNA genes:74
Interacting mature miRNAs:74
Transcripts:ENSMUST00000047672
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001358767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_007636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA023539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB022156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB041570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL589661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC007470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU755483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY075050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ076140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z31553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000047672   ⟹   ENSMUSP00000036288
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10116,886,906 - 116,899,719 (-)Ensembl
GRCm38.p6 Ensembl10117,051,001 - 117,063,814 (-)Ensembl
RefSeq Acc Id: ENSMUST00000218059   ⟹   ENSMUSP00000151958
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10116,897,410 - 116,899,280 (-)Ensembl
GRCm38.p6 Ensembl10117,061,505 - 117,063,375 (-)Ensembl
RefSeq Acc Id: ENSMUST00000218502
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10116,890,804 - 116,893,729 (-)Ensembl
GRCm38.p6 Ensembl10117,054,899 - 117,057,824 (-)Ensembl
RefSeq Acc Id: ENSMUST00000218719   ⟹   ENSMUSP00000151890
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10116,897,251 - 116,899,664 (-)Ensembl
GRCm38.p6 Ensembl10117,061,346 - 117,063,759 (-)Ensembl
RefSeq Acc Id: ENSMUST00000219036   ⟹   ENSMUSP00000151587
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10116,896,551 - 116,899,280 (-)Ensembl
GRCm38.p6 Ensembl10117,060,646 - 117,063,375 (-)Ensembl
RefSeq Acc Id: ENSMUST00000219573   ⟹   ENSMUSP00000151306
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10116,896,714 - 116,899,668 (-)Ensembl
GRCm38.p6 Ensembl10117,060,809 - 117,063,763 (-)Ensembl
RefSeq Acc Id: ENSMUST00000219690   ⟹   ENSMUSP00000152005
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10116,886,911 - 116,890,806 (-)Ensembl
GRCm38.p6 Ensembl10117,051,006 - 117,054,901 (-)Ensembl
RefSeq Acc Id: NM_001358767   ⟹   NP_001345696
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910116,886,902 - 116,899,280 (-)NCBI
GRCm3810117,050,997 - 117,063,375 (-)NCBI
Sequence:
RefSeq Acc Id: NM_007636   ⟹   NP_031662
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910116,886,902 - 116,899,757 (-)NCBI
GRCm3810117,050,997 - 117,063,852 (-)NCBI
MGSCv3710116,488,054 - 116,500,870 (-)RGD
Celera10118,994,151 - 119,006,966 (-)RGD
cM Map10 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_031662   ⟸   NM_007636
- UniProtKB: P80314 (UniProtKB/Swiss-Prot),   Q542X7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001345696   ⟸   NM_001358767
RefSeq Acc Id: ENSMUSP00000151958   ⟸   ENSMUST00000218059
RefSeq Acc Id: ENSMUSP00000151890   ⟸   ENSMUST00000218719
RefSeq Acc Id: ENSMUSP00000151587   ⟸   ENSMUST00000219036
RefSeq Acc Id: ENSMUSP00000152005   ⟸   ENSMUST00000219690
RefSeq Acc Id: ENSMUSP00000151306   ⟸   ENSMUST00000219573
RefSeq Acc Id: ENSMUSP00000036288   ⟸   ENSMUST00000047672

Promoters
RGD ID:6848977
Promoter ID:MM_XEF:868
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   MEF_B6
Transcripts:NM_001005905,   NM_001006756,   NM_001012533,   NM_001018416,   NM_001034239,   NM_001046644,   NM_001086919,   NM_001140133,   NM_001142262,   NM_001170520,   NM_006431,   NM_122097,   NM_132296,   NM_171985,   NM_176715,   NM_201455
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3610116,499,681 - 116,500,362 (-)MPROMDB
RGD ID:6819090
Promoter ID:MM_KWN:5685
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_007636
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3610116,500,481 - 116,501,132 (-)MPROMDB
RGD ID:8673318
Promoter ID:EPDNEW_M14690
Type:initiation region
Name:Cct2_1
Description:Mus musculus chaperonin containing Tcp1, subunit 2 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3810117,063,773 - 117,063,833EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:107186 AgrOrtholog
Ensembl Genes ENSMUSG00000034024 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000036288 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000151306 UniProtKB/TrEMBL
  ENSMUSP00000151587 UniProtKB/TrEMBL
  ENSMUSP00000151890 UniProtKB/TrEMBL
  ENSMUSP00000151958 UniProtKB/TrEMBL
  ENSMUSP00000152005 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000047672 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000218059 UniProtKB/TrEMBL
  ENSMUST00000218719 UniProtKB/TrEMBL
  ENSMUST00000219036 UniProtKB/TrEMBL
  ENSMUST00000219573 UniProtKB/TrEMBL
  ENSMUST00000219690 UniProtKB/TrEMBL
Gene3D-CATH 1.10.560.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.260.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.50.7.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Chap_CCT_beta UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Chaperone_TCP-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Chaperonin_TCP-1_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cpn60/TCP-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GroEL-like_apical_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GROEL-like_equatorial_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TCP-1-like_intermed_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12461 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:107186 ENTREZGENE
NCBI Gene 12461 ENTREZGENE
PANTHER PTHR11353:SF23 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Cpn60_TCP1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cct2 PhenoGen
PRINTS TCOMPLEXTCP1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE TCP1_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TCP1_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TCP1_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48592 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52029 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54849 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs chap_CCT_beta UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1W2P6Q3_MOUSE UniProtKB/TrEMBL
  A0A1W2P7B7_MOUSE UniProtKB/TrEMBL
  A0A1W2P828_MOUSE UniProtKB/TrEMBL
  A0A1W2P871_MOUSE UniProtKB/TrEMBL
  A0A1W2P8B6_MOUSE UniProtKB/TrEMBL
  P80314 ENTREZGENE
  Q542X7 ENTREZGENE, UniProtKB/TrEMBL
  Q9JJD8_MOUSE UniProtKB/TrEMBL
  TCPB_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q9R1U0 UniProtKB/Swiss-Prot