Or1f19 (olfactory receptor family 1 subfamily F member 19)

Gene: Or1f19 (olfactory receptor family 1 subfamily F member 19) Mus musculus

Analyze

Symbol:

Or1f19

Name:

olfactory receptor family 1 subfamily F member 19

RGD ID:

1552952

MGI Page

MGI

Description:

Predicted to enable olfactory receptor activity. Predicted to be involved in signal transduction. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and sensory perception of smell. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to several human genes including OR1F1 (olfactory receptor family 1 subfamily F member 1).

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

GA_x54KRFPKG5P-112942-113883; MOR131; MOR131-1; olfactory receptor 161; olfactory receptor MOR131-1; Olfr161; OR912-47M6

RGD Orthologs

Alliance Genes

More Info

more info ...

Related Pseudogenes:

Or1f20-ps1

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	3,410,262 - 3,411,203 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	3,408,906 - 3,417,187 (+)	Ensembl		GRCm39 Ensembl
GRCm38	16	3,592,398 - 3,593,339 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	3,591,042 - 3,599,323 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	3,592,398 - 3,593,339 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	3,507,626 - 3,508,567 (+)	NCBI		MGSCv36	mm8
Celera	16	4,234,331 - 4,235,272 (+)	NCBI		Celera
Cytogenetic Map	16	A1	NCBI
cM Map	16	2.11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

epilepsy (ISO)

genetic disease (ISO)

Hirschsprung's disease (ISO)

idiopathic generalized epilepsy (ISO)

short-rib thoracic dysplasia 9 with or without polydactyly (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (EXP)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (EXP)

2,2',5,5'-tetrachlorobiphenyl (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

benzo[a]pyrene (ISO)

bisphenol A (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

CGP 52608 (ISO)

cisplatin (ISO)

crocidolite asbestos (ISO)

dextran sulfate (EXP)

genistein (ISO)

PCB138 (EXP)

potassium dichromate (EXP)

resveratrol (ISO)

rotenone (ISO)

silicon dioxide (ISO)

titanium dioxide (EXP)

triptonide (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

G protein-coupled receptor signaling pathway (ISA)

sensory perception of smell (ISA)

signal transduction (IBA)

Cellular Component

membrane (ISA)

plasma membrane (IBA)

Molecular Function

olfactory receptor activity (IBA,ISA)

References

References - curated

#	Reference Title	Reference Citation
1.	MGDs mouse GO annotations	MGD data from the GO Consortium
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10706615	PMID:11802173	PMID:11875048	PMID:14611657	PMID:21873635	PMID:32295537

Genomics

Comparative Map Data

Or1f19
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	3,410,262 - 3,411,203 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	3,408,906 - 3,417,187 (+)	Ensembl		GRCm39 Ensembl
GRCm38	16	3,592,398 - 3,593,339 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	3,591,042 - 3,599,323 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	3,592,398 - 3,593,339 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	3,507,626 - 3,508,567 (+)	NCBI		MGSCv36	mm8
Celera	16	4,234,331 - 4,235,272 (+)	NCBI		Celera
Cytogenetic Map	16	A1	NCBI
cM Map	16	2.11	NCBI

OR1F1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	3,188,204 - 3,206,556 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	3,188,204 - 3,224,779 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	3,238,204 - 3,256,506 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	3,194,248 - 3,195,186 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	16	3,194,247 - 3,195,186	NCBI
Celera	16	3,459,913 - 3,460,851 (+)	NCBI		Celera
Cytogenetic Map	16	p13.3	NCBI
HuRef	16	3,226,025 - 3,226,963 (+)	NCBI		HuRef
CHM1_1	16	3,254,059 - 3,254,997 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	3,214,814 - 3,233,547 (+)	NCBI		T2T-CHM13v2.0

Or1f34
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	12,830,814 - 12,839,442 (-)	NCBI		GRCr8
mRatBN7.2	10	12,333,860 - 12,334,801 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	12,333,860 - 12,334,801 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	17,026,023 - 17,026,964 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	16,514,831 - 16,515,772 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	12,051,150 - 12,052,091 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	12,673,136 - 12,674,077 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	12,673,136 - 12,674,077 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	12,497,244 - 12,498,185 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	12,549,768 - 12,550,709 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	12,549,767 - 12,550,709 (-)	NCBI
Celera	10	12,051,743 - 12,052,684 (-)	NCBI		Celera
Cytogenetic Map	10	q12	NCBI

LOC100979469
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	3,748,840 - 3,751,814 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	7,533,658 - 7,536,633 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	2,146,425 - 2,148,139 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	3,325,063 - 3,326,002 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

OR1AB2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	46,391,445 - 46,392,386 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	46,391,117 - 46,392,386 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	46,305,947 - 46,306,894 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	46,879,898 - 46,880,845 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	20	46,114,453 - 46,115,400 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	46,526,021 - 46,526,968 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	46,802,362 - 46,803,309 (-)	NCBI		UU_Cfam_GSD_1.0

LOC100516963
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	39,001,044 - 39,001,988 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	38,999,900 - 39,007,156 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	40,388,237 - 40,389,181 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Variants

Variants in Or1f19
14 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	43
Count of miRNA genes:	42
Interacting mature miRNAs:	42
Transcripts:	ENSMUST00000061541
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4141060	Pbwg19_m	postnatal body weight growth 19 (mouse)			Not determined		16	1	20780888	Mouse
1300632	Loca2_m	locomotor activity 2 (mouse)			Not determined		16	1	22500574	Mouse
10043879	Adip25_m	adiposity 25 (mouse)			Not determined		16	1	22520318	Mouse
1301575	Tanidd3_m	tally ho associated non-insulin dependednt diabetes mellitus 3 (mouse)			Not determined		16	1	22897739	Mouse
4141468	Nhdlq10_m	non-HDL QTL 10 (mouse)			Not determined		16	1	24263853	Mouse
1301970	Heal11_m	wound healing/regeneration 11 (mouse)			Not determined		16	1	24263853	Mouse
1301384	Dice1_m	determination of interleukin 4 commitment 1 (mouse)			Not determined		16	1	28434358	Mouse
10402497	Lmr23_m	leishmaniasis resistance 23 (mouse)			Not determined		16	1	29674200	Mouse
1301559	Bbaa19_m	B.burgdorferi-associated arthritis 19 (mouse)			Not determined		16	1	30066977	Mouse
10412289	Ppsl_m	plasma P-selectin levels (mouse)			Not determined		16	1	30814572	Mouse
27095908	Scvln7_m	sacral vertebrae length 2, 5 week (mouse)					16	3317864	39820362	Mouse
27226768	Tibl9_m	tibia length 9, 5 week (mouse)					16	3317864	51420363	Mouse
27226785	Feml12_m	femur length 12, 5 week (mouse)					16	3317864	64620363	Mouse

Markers in Region

UniSTS:489454

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	16	3,592,398 - 3,593,339	UniSTS	GRCm38
MGSCv37	16	3,592,398 - 3,593,339	UniSTS	GRCm37
Celera	16	4,234,331 - 4,235,272	UniSTS
Cytogenetic Map	16	B1	UniSTS

UniSTS:495645

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	16	3,592,298 - 3,593,368	UniSTS	GRCm38
MGSCv37	16	3,592,298 - 3,593,368	UniSTS	GRCm37
Celera	16	4,234,231 - 4,235,301	UniSTS
Cytogenetic Map	16	B1	UniSTS

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_146860	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC140982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF073984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY073231	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY317244	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466521	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000061541 ⟹ ENSMUSP00000058956

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	3,410,262 - 3,411,203 (+)	Ensembl
GRCm38.p6 Ensembl	16	3,592,398 - 3,593,339 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000216259 ⟹ ENSMUSP00000150825

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	3,408,906 - 3,417,187 (+)	Ensembl
GRCm38.p6 Ensembl	16	3,591,042 - 3,599,323 (+)	Ensembl

RefSeq Acc Id:

NM_146860 ⟹ NP_667071

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	16	3,410,262 - 3,411,203 (+)	NCBI
GRCm38	16	3,592,398 - 3,593,339 (+)	ENTREZGENE
MGSCv37	16	3,592,398 - 3,593,339 (+)	RGD
Celera	16	4,234,331 - 4,235,272 (+)	RGD
cM Map	16		ENTREZGENE

Sequence:

show sequence

ATGGGAGGCACCAACCAGTCCAGTGTCTCTGAGTTCCTCCTTCTGGGACTCTCCAGGCAGCCCC
AGCAGCAACAGCAGCTCATCTTTCTACTCTTCCTCATCATGTACCTGGCCACTGTCTTGGGAAA
CCTGCTCATCATCCTGGCCATCAGCACAGACTCCCGCCTGCACACCCCCATGTACTTCTTCCTC
AGCAACCTGTCCTTTGTGGATGTATGCTTCTCCTCCACCACTGTCCCTAAGGTACTGGCCATTC
ACATACTAAGAAATCAAGCCATTTCGTTCTCTGGGTGCCTCACACAGCTGTATTTTCTCTGTGT
GTTTGCTGACATGGACAATTTCCTGCTGGCTGTGATGGCCTATGACCGATTTGTGGCCATATGC
CACCCTTTACACTACACAACAAAGATGACCCATCAGCTTTGTGCCTTTCTTGTTGTTGGGTCCT
GGATGGTAGCCAGTCTGAATGCTCTGTTGCACACACTGCTCGTGGCTCAACTCTACTTCTGTGG
GGACAATGTGATCCCCCACTTCTTCTGTGAAGTGACTCCCCTGCTGAAACTCTCTTGCTCAGAC
ACACATCTCAATGAGTTGATGATTCTTGCTGTTGCAGGGCTGATAATGTTAGCTCCATTTGTTT
GCATCCTCTTGTCTTATATCCTTATTGCTTGTGCCATCCTGAAAATCTCATCCACAGGAAGATG
GAAAGCCTTCTCTACCTGTGGCTCACACTTGGCTGTTGTGTGCCTCTTCTATGGCACTATCATA
TCCCTGTATTTCAACCCCTCATCTTCTCACTCAGCTGGGAGGGACATGGCAGCTGCCATGATGT
ACACAGTGGTGACCCCCATGATGAAACCTTTCATCTACAGCCTGAGGAACAGGGACATGAAAGG
GGCTTTAAGGAAAGTGCTTACCATGAGATTTATATCTACACAGTAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_667071	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAD43433	(Get FASTA)	NCBI Sequence Viewer
	AAL60894	(Get FASTA)	NCBI Sequence Viewer
	AAP70756	(Get FASTA)	NCBI Sequence Viewer
	EDK97201	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000058956
	ENSMUSP00000058956.2
	ENSMUSP00000150825.2

RefSeq Acc Id:

NP_667071 ⟸ NM_146860

- UniProtKB:

Q8VGB9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGGTNQSSVSEFLLLGLSRQPQQQQQLIFLLFLIMYLATVLGNLLIILAISTDSRLHTPMYFFL
SNLSFVDVCFSSTTVPKVLAIHILRNQAISFSGCLTQLYFLCVFADMDNFLLAVMAYDRFVAIC
HPLHYTTKMTHQLCAFLVVGSWMVASLNALLHTLLVAQLYFCGDNVIPHFFCEVTPLLKLSCSD
THLNELMILAVAGLIMLAPFVCILLSYILIACAILKISSTGRWKAFSTCGSHLAVVCLFYGTII
SLYFNPSSSHSAGRDMAAAMMYTVVTPMMKPFIYSLRNRDMKGALRKVLTMRFISTQ

hide sequence

RefSeq Acc Id:

ENSMUSP00000058956 ⟸ ENSMUST00000061541

RefSeq Acc Id:

ENSMUSP00000150825 ⟸ ENSMUST00000216259

Protein Domains

G-protein coupled receptors family 1 profile

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q8VGB9-F1-model_v2	AlphaFold	Q8VGB9	1-313	view protein structure

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:3032605	AgrOrtholog
Ensembl Genes	ENSMUSG00000051003	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000061541	ENTREZGENE
	ENSMUST00000061541.2	UniProtKB/TrEMBL
	ENSMUST00000216259.2	UniProtKB/TrEMBL
Gene3D-CATH	Rhodopsin 7-helix transmembrane proteins	UniProtKB/TrEMBL
InterPro	7TM_GPCR_Rhodpsn	UniProtKB/TrEMBL
	GPCR_Rhodpsn_supfam	UniProtKB/TrEMBL
	Olfact_rcpt	UniProtKB/TrEMBL
KEGG Report	mmu:258859	UniProtKB/TrEMBL
MGD	MGI:3032605	ENTREZGENE
NCBI Gene	258859	ENTREZGENE
PANTHER	OLFACTORY RECEPTOR	UniProtKB/TrEMBL
	OLFACTORY RECEPTOR 1F1-RELATED	UniProtKB/TrEMBL
Pfam	7tm_4	UniProtKB/TrEMBL
PhenoGen	Or1f19	PhenoGen
PRINTS	GPCRRHODOPSN	UniProtKB/TrEMBL
	OLFACTORYR	UniProtKB/TrEMBL
PROSITE	G_PROTEIN_RECEP_F1_1	UniProtKB/TrEMBL
	G_PROTEIN_RECEP_F1_2	UniProtKB/TrEMBL
Superfamily-SCOP	Family A G protein-coupled receptor-like	UniProtKB/TrEMBL
UniProt	Q8VGB9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-05-24	Or1f19	olfactory receptor family 1 subfamily F member 19	Olfr161	olfactory receptor 161	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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