St3gal5 (ST3 beta-galactoside alpha-2,3-sialyltransferase 5) - Rat Genome Database
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Gene: St3gal5 (ST3 beta-galactoside alpha-2,3-sialyltransferase 5) Mus musculus
Analyze
Symbol: St3gal5
Name: ST3 beta-galactoside alpha-2,3-sialyltransferase 5
RGD ID: 1552922
MGI Page MGI
Description: Is expressed in several structures, including alimentary system; brain; liver; spleen; and testis. Human ortholog(s) of this gene implicated in salt and pepper syndrome. Orthologous to human ST3GAL5 (ST3 beta-galactoside alpha-2,3-sialyltransferase 5); PARTICIPATES IN ganglioside metabolic pathway; INTERACTS WITH 1,1-dichloroethene; 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4'-tetrachlorobiphenyl.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 3S-; 3S-T; [a]; [a]2; CMP-NeuAc:lactosylceramide alpha-2,3-sialyltransferase; ganglioside GM3 synthase; GM3 synthase; GM3-specific sialytransferase; lactosylceramide alpha-2,3-sialyltransferase; mST3Gal V; Si; sialyltransferase 9 (CMP-NeuAc:lactosylceramide alpha-2,3-sialyltransferase); Siat9; ST3Gal V; ST3GalV
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39672,074,502 - 72,131,555 (+)NCBIGRCm39mm39
GRCm39 Ensembl672,074,576 - 72,131,555 (+)Ensembl
GRCm38672,097,552 - 72,154,571 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl672,097,592 - 72,154,571 (+)EnsemblGRCm38mm10GRCm38
MGSCv37672,047,607 - 72,104,564 (+)NCBIGRCm37mm9NCBIm37
MGSCv36672,027,122 - 72,084,079 (+)NCBImm8
Celera674,186,058 - 74,242,678 (+)NCBICelera
Cytogenetic Map6C1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2-acetamidofluorene  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (EXP)
3,4-methylenedioxymethamphetamine  (EXP)
3-chloropropane-1,2-diol  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
4-hydroxyphenyl retinamide  (EXP)
acrolein  (ISO)
aflatoxin B1  (EXP,ISO)
aldrin  (EXP)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
bisphenol A  (ISO)
calcitriol  (ISO)
carbon nanotube  (EXP,ISO)
chloroethene  (EXP)
ciguatoxin CTX1B  (EXP)
clofibrate  (EXP)
cobalt dichloride  (ISO)
copper(II) sulfate  (EXP)
cyclosporin A  (EXP,ISO)
dibenz[a,h]anthracene  (EXP)
doxorubicin  (EXP,ISO)
endosulfan  (ISO)
etoposide  (EXP)
GW 4064  (EXP)
lead(0)  (ISO)
lead(2+)  (ISO)
leflunomide  (ISO)
methotrexate  (EXP)
ochratoxin A  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
pentachlorophenol  (EXP)
perfluorohexanesulfonic acid  (EXP)
perfluorononanoic acid  (EXP)
perfluorooctanoic acid  (EXP)
phenobarbital  (EXP)
pirinixic acid  (EXP)
pregnenolone 16alpha-carbonitrile  (EXP)
progesterone  (ISO)
propanal  (ISO)
propiconazole  (EXP)
serpentine asbestos  (ISO)
Soman  (ISO)
streptozocin  (ISO)
sunitinib  (ISO)
tamoxifen  (EXP)
Tesaglitazar  (ISO)
tetrachloromethane  (EXP)
trichostatin A  (ISO)
troglitazone  (ISO)
tungsten  (EXP)
tunicamycin  (ISO)
valproic acid  (EXP,ISO)
vanadyl sulfate  (ISO)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:8889548   PMID:10092602   PMID:10349636   PMID:10381338   PMID:10619706   PMID:10894948   PMID:11013084   PMID:11042159   PMID:11059835   PMID:11076861   PMID:12477932   PMID:12629211  
PMID:14681479   PMID:15534203   PMID:15710896   PMID:15782199   PMID:15890474   PMID:15917254   PMID:16115873   PMID:16141072   PMID:16141073   PMID:17604219   PMID:17883393   PMID:18077828  
PMID:18171481   PMID:18450647   PMID:18996356   PMID:19420140   PMID:19470479   PMID:19542236   PMID:20497953   PMID:21267068   PMID:21333627   PMID:21873635   PMID:22308377   PMID:22563011  
PMID:22768242   PMID:22875802   PMID:23260145   PMID:23555611   PMID:24102378   PMID:24326453   PMID:24599001   PMID:25643708   PMID:25652401   PMID:25902507   PMID:26362868   PMID:27102283  
PMID:27590073   PMID:28808804   PMID:29880531   PMID:30242108   PMID:30576498   PMID:30797170   PMID:30822302   PMID:32861756  


Genomics

Comparative Map Data
St3gal5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39672,074,502 - 72,131,555 (+)NCBIGRCm39mm39
GRCm39 Ensembl672,074,576 - 72,131,555 (+)Ensembl
GRCm38672,097,552 - 72,154,571 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl672,097,592 - 72,154,571 (+)EnsemblGRCm38mm10GRCm38
MGSCv37672,047,607 - 72,104,564 (+)NCBIGRCm37mm9NCBIm37
MGSCv36672,027,122 - 72,084,079 (+)NCBImm8
Celera674,186,058 - 74,242,678 (+)NCBICelera
Cytogenetic Map6C1NCBI
ST3GAL5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl285,837,120 - 85,905,199 (-)EnsemblGRCh38hg38GRCh38
GRCh38285,837,120 - 85,889,034 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37286,064,243 - 86,116,157 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36285,919,782 - 85,969,668 (-)NCBINCBI36hg18NCBI36
Build 34285,977,928 - 86,027,795NCBI
Celera285,894,364 - 85,944,312 (-)NCBI
Cytogenetic Map2p11.2NCBI
HuRef285,963,652 - 86,013,554 (-)NCBIHuRef
CHM1_1285,995,811 - 86,045,674 (-)NCBICHM1_1
St3gal5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24104,134,553 - 104,192,560 (+)NCBI
Rnor_6.0 Ensembl499,937,558 - 99,999,902 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0499,937,499 - 99,999,905 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04164,713,194 - 164,769,525 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44105,373,385 - 105,432,192 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14105,618,018 - 105,676,673 (+)NCBI
Celera493,289,811 - 93,346,557 (+)NCBICelera
Cytogenetic Map4q31NCBI
St3gal5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554241,692,182 - 1,732,595 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554241,692,182 - 1,729,206 (+)NCBIChiLan1.0ChiLan1.0
ST3GAL5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A87,437,873 - 87,485,660 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A87,437,874 - 87,503,625 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A85,888,895 - 85,938,944 (-)NCBIMhudiblu_PPA_v0panPan3
ST3GAL5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1739,153,469 - 39,204,873 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11739,154,408 - 39,205,661 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
St3gal5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049367121,458,637 - 1,496,118 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ST3GAL5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl358,862,992 - 58,919,960 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1358,862,984 - 58,919,554 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2361,761,954 - 61,767,961 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ST3GAL5
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11421,235,682 - 21,314,541 (+)NCBI
ChlSab1.1 Ensembl1421,287,241 - 21,313,558 (+)Ensembl
St3gal5
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474917,312,144 - 17,354,906 (+)NCBI

Position Markers
Siat9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381870,425,237 - 70,425,349UniSTSGRCm38
GRCm38672,154,302 - 72,154,428UniSTSGRCm38
MGSCv371870,584,891 - 70,585,003UniSTSGRCm37
MGSCv37672,104,296 - 72,104,422UniSTSGRCm37
Celera1871,712,366 - 71,712,482UniSTS
Celera674,242,420 - 74,242,536UniSTS
Cytogenetic Map6C3UniSTS
cM Map6 UniSTS
cM MapUN UniSTS
St3gal5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6C3UniSTS
PMC152312P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38672,142,142 - 72,142,478UniSTSGRCm38
MGSCv37672,092,136 - 72,092,472UniSTSGRCm37
Celera674,230,256 - 74,230,592UniSTS
Cytogenetic Map6C3UniSTS
Siat9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6C3UniSTS
cM Map6 UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487426034Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080600000Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414873387692Mouse
13208564Bmiq7_mbody mass index QTL 7 (mouse)62500000080000000Mouse
4141782Mrdq5_mmodifier of retinal degeneration QTL 5 (mouse)Not determined3285065078238974Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
12880424V25Dq4_mvitamin D inactive form serum level QTL 4 (mouse)64160000075600000Mouse
1301266Lmr4_mleishmaniasis resistance 4 (mouse)Not determined64211637376116515Mouse
11040600Lmr4c_mleishmaniasis resistance 4c (mouse)64211637376116515Mouse
11040601Lmr4a_mleishmaniasis resistance 4a (mouse)64211637376116515Mouse
11533915Mts4_mmammary tumor susceptibility 4 (mouse)64211637376116515Mouse
12910785Pwgrq16_mpost-weaning growth rate QTL 16 (mouse)64382681377811523Mouse
12910798Pwgrq5_mpre-weaning growth rate QTL 5 (mouse)64382681377811523Mouse
12910802Pwbwq12_mpost-weaning body weight QTL 12 (mouse)64382681377811523Mouse
12910807Pwbwq11_mpost-weaning body weight QTL 11 (mouse)64382681377811523Mouse
12910809Pwbwq10_mpost-weaning body weight QTL 10 (mouse)64382681377811523Mouse
12910820Ogrq3_moverall growth rate QTL 3 (mouse)64382681377811523Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64531405987426034Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
4140983Srilp_msleep response to influenza, light phase (mouse)Not determined4872655675447710Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1301254Skts11_mskin tumor susceptibility 11 (mouse)Not determined65117915085179300Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5437342788379171Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
4141990Etax6_methanol induced ataxia 6 (mouse)Not determined7132262186275719Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:686
Count of miRNA genes:251
Interacting mature miRNAs:286
Transcripts:ENSMUST00000069994, ENSMUST00000114112
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001035228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017321473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB013302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB018048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC127244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF119416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV307729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW488475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB866983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC138557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC138559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY160366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y15003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y18019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y18020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y18021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y18022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y18023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000069994   ⟹   ENSMUSP00000070414
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl672,097,592 - 72,154,571 (+)Ensembl
RefSeq Acc Id: ENSMUST00000114112   ⟹   ENSMUSP00000109747
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl672,097,623 - 72,154,571 (+)Ensembl
RefSeq Acc Id: ENSMUST00000187007   ⟹   ENSMUSP00000146063
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl672,097,757 - 72,147,150 (+)Ensembl
RefSeq Acc Id: ENSMUST00000188366   ⟹   ENSMUSP00000145599
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl672,115,232 - 72,142,271 (+)Ensembl
RefSeq Acc Id: NM_001035228   ⟹   NP_001030305
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39672,074,592 - 72,131,554 (+)NCBI
GRCm38672,097,608 - 72,154,570 (+)NCBI
MGSCv37672,047,607 - 72,104,564 (+)RGD
Celera674,186,053 - 74,242,678 (+)NCBI
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_011375   ⟹   NP_035505
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39672,074,592 - 72,131,554 (+)NCBI
GRCm38672,097,608 - 72,154,570 (+)NCBI
MGSCv37672,047,607 - 72,104,564 (+)RGD
Celera674,186,053 - 74,242,678 (+)NCBI
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006505816   ⟹   XP_006505879
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39672,074,613 - 72,131,555 (+)NCBI
GRCm38672,097,552 - 72,154,571 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505817   ⟹   XP_006505880
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39672,092,192 - 72,131,555 (+)NCBI
GRCm38672,115,204 - 72,154,571 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505818   ⟹   XP_006505881
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39672,074,548 - 72,131,555 (+)NCBI
GRCm38672,097,562 - 72,154,571 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505819   ⟹   XP_006505882
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39672,074,555 - 72,131,555 (+)NCBI
GRCm38672,097,912 - 72,154,571 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505820   ⟹   XP_006505883
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39672,092,197 - 72,131,555 (+)NCBI
GRCm38672,115,211 - 72,154,571 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017321473   ⟹   XP_017176962
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39672,075,937 - 72,131,555 (+)NCBI
GRCm38672,098,953 - 72,154,571 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036165982   ⟹   XP_036021875
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39672,074,502 - 72,131,555 (+)NCBI
RefSeq Acc Id: XR_004942927
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39672,074,564 - 72,131,555 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_035505   ⟸   NM_011375
- Peptide Label: isoform b
- UniProtKB: O88829 (UniProtKB/Swiss-Prot),   A0A0R4J1J3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001030305   ⟸   NM_001035228
- Peptide Label: isoform a
- UniProtKB: O88829 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006505879   ⟸   XM_006505816
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006505881   ⟸   XM_006505818
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006505882   ⟸   XM_006505819
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006505880   ⟸   XM_006505817
- Peptide Label: isoform X2
- UniProtKB: O88829 (UniProtKB/Swiss-Prot),   A0A0R4J1J3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006505883   ⟸   XM_006505820
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017176962   ⟸   XM_017321473
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSMUSP00000145599   ⟸   ENSMUST00000188366
RefSeq Acc Id: ENSMUSP00000109747   ⟸   ENSMUST00000114112
RefSeq Acc Id: ENSMUSP00000146063   ⟸   ENSMUST00000187007
RefSeq Acc Id: ENSMUSP00000070414   ⟸   ENSMUST00000069994
RefSeq Acc Id: XP_036021875   ⟸   XM_036165982
- Peptide Label: isoform X2

Promoters
RGD ID:6840024
Promoter ID:MM_KWN:46443
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_001035228,   NM_011375
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36672,047,296 - 72,047,802 (+)MPROMDB
RGD ID:6848039
Promoter ID:MM_ACW:41593
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Liver
Transcripts:ST3GAL5.DSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36672,064,856 - 72,065,356 (+)MPROMDB
RGD ID:6890058
Promoter ID:EPDNEW_M8449
Type:initiation region
Name:St3gal5_1
Description:Mus musculus ST3 beta-galactoside alpha-2,3-sialyltransferase5 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8450  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38672,097,608 - 72,097,668EPDNEW
RGD ID:6889998
Promoter ID:EPDNEW_M8450
Type:initiation region
Name:St3gal5_2
Description:Mus musculus ST3 beta-galactoside alpha-2,3-sialyltransferase5 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8449  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38672,097,744 - 72,097,804EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1339963 AgrOrtholog
Ensembl Genes ENSMUSG00000056091 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000070414 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000109747 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000145599 UniProtKB/TrEMBL
  ENSMUSP00000146063 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000069994 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000114112 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000187007 UniProtKB/TrEMBL
  ENSMUST00000188366 UniProtKB/TrEMBL
Gene3D-CATH 3.90.1480.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Glyco_trans_29 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GT29-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sialyl_trans UniProtKB/TrEMBL
KEGG Report mmu:20454 UniProtKB/Swiss-Prot
MGD MGI:1339963 ENTREZGENE
NCBI Gene 20454 ENTREZGENE
Pfam Glyco_transf_29 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen St3gal5 PhenoGen
PIRSF Sialyl_trans UniProtKB/TrEMBL
UniProt A0A0R4J1J3 ENTREZGENE, UniProtKB/TrEMBL
  A0A0U1RNK2_MOUSE UniProtKB/TrEMBL
  A0A0U1RPP1_MOUSE UniProtKB/TrEMBL
  O88829 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary B2RRS1 UniProtKB/Swiss-Prot
  Q3TMT6 UniProtKB/Swiss-Prot
  Q3TY01 UniProtKB/Swiss-Prot
  Q91YF2 UniProtKB/Swiss-Prot
  Q91YF3 UniProtKB/Swiss-Prot
  Q9CZ65 UniProtKB/Swiss-Prot
  Q9QWF8 UniProtKB/Swiss-Prot
  Q9QWF9 UniProtKB/Swiss-Prot