Marchf1 (membrane associated ring-CH-type finger 1) - Rat Genome Database
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Gene: Marchf1 (membrane associated ring-CH-type finger 1) Mus musculus
Analyze
Symbol: Marchf1
Name: membrane associated ring-CH-type finger 1
RGD ID: 1552868
MGI Page MGI
Description: Exhibits ubiquitin protein ligase activity. Involved in antigen processing and presentation of peptide antigen via MHC class II; immune response; and protein polyubiquitination. Localizes to bounding membrane of organelle and endoplasmic reticulum membrane. Is expressed in central nervous system. Orthologous to human MARCHF1 (membrane associated ring-CH-type finger 1); INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2900024D24Rik; BB085186; E3 ubiquitin-protein ligase MARCH1; E3 ubiquitin-protein ligase MARCHF1; Marc; MARCH-I; March1; membrane-associated ring finger (C3HC4) 1; membrane-associated RING finger protein 1; membrane-associated RING-CH protein I; RING-type E3 ubiquitin transferase MARCH1; RING-type E3 ubiquitin transferase MARCHF1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39866,070,550 - 66,925,761 (+)NCBIGRCm39mm39
GRCm38865,618,009 - 66,472,841 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl865,617,900 - 66,471,637 (+)EnsemblGRCm38mm10GRCm38
MGSCv37868,141,939 - 68,995,536 (+)NCBIGRCm37mm9NCBIm37
MGSCv36868,547,514 - 69,399,416 (+)NCBImm8
Celera868,174,462 - 69,027,711 (+)NCBICelera
Cytogenetic Map8B3.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
COVID-19  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:15489334   PMID:16141072   PMID:16141073   PMID:17255932   PMID:19880452   PMID:19917682   PMID:21059907  
PMID:21220452   PMID:21267068   PMID:21849678   PMID:21862448   PMID:21873635   PMID:21896490   PMID:22503116   PMID:22566640   PMID:23305794   PMID:23712430   PMID:24218453   PMID:26240324  
PMID:26408197   PMID:27162138   PMID:27503069   PMID:27503071   PMID:27577745   PMID:27940660   PMID:29371232   PMID:29378848   PMID:29854835   PMID:30001419   PMID:30154416   PMID:30356278  
PMID:32606244  


Genomics

Comparative Map Data
Marchf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39866,070,550 - 66,925,761 (+)NCBIGRCm39mm39
GRCm38865,618,009 - 66,472,841 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl865,617,900 - 66,471,637 (+)EnsemblGRCm38mm10GRCm38
MGSCv37868,141,939 - 68,995,536 (+)NCBIGRCm37mm9NCBIm37
MGSCv36868,547,514 - 69,399,416 (+)NCBImm8
Celera868,174,462 - 69,027,711 (+)NCBICelera
Cytogenetic Map8B3.1NCBI
MARCHF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl4163,524,298 - 164,384,050 (-)EnsemblGRCh38hg38GRCh38
GRCh384163,524,298 - 164,384,050 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh374164,445,450 - 165,305,093 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364164,668,499 - 164,754,226 (-)NCBINCBI36hg18NCBI36
Build 344164,806,653 - 164,892,381NCBI
Celera4161,777,720 - 162,636,895 (-)NCBI
Cytogenetic Map4q32.2-q32.3NCBI
HuRef4160,199,325 - 161,058,221 (-)NCBIHuRef
CHM1_14164,421,900 - 165,280,873 (-)NCBICHM1_1
Marchf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01624,998,709 - 25,856,327 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1625,001,666 - 25,192,675 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01624,882,375 - 25,407,999 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41624,971,361 - 25,496,590 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11624,971,358 - 25,055,466 (-)NCBI
Celera1623,375,326 - 23,888,905 (-)NCBICelera
Cytogenetic Map16p14-p13NCBI
Marchf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540341,060,246 - 41,484,734 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540341,187,039 - 41,484,734 (+)NCBIChiLan1.0ChiLan1.0
MARCHF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.14167,579,850 - 168,692,736 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4167,583,874 - 168,153,648 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v04155,791,599 - 156,639,456 (-)NCBIMhudiblu_PPA_v0panPan3
MARCHF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1559,753,216 - 60,036,060 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11559,753,597 - 60,279,692 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Marchf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365551,810,896 - 2,097,870 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MARCHF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl852,375,510 - 52,951,031 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1852,375,510 - 52,951,031 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2855,502,841 - 55,523,454 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MARCHF1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17109,978,620 - 110,783,623 (-)NCBI
ChlSab1.1 Ensembl7109,979,056 - 110,063,661 (-)Ensembl
Marchf1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475812,528,242 - 13,321,851 (+)NCBI

Position Markers
BB314629  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38866,140,579 - 66,140,676UniSTSGRCm38
MGSCv37868,664,478 - 68,664,575UniSTSGRCm37
Celera868,696,839 - 68,696,936UniSTS
Cytogenetic Map8B3.1-B3.2UniSTS
Whitehead/MRC_RH6535.26UniSTS
AI256176  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38866,470,218 - 66,470,319UniSTSGRCm38
MGSCv37868,994,117 - 68,994,218UniSTSGRCm37
Celera869,026,292 - 69,026,393UniSTS
Cytogenetic Map8B3.1-B3.2UniSTS
Whitehead/MRC_RH8714.91UniSTS
BB085186  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38866,470,218 - 66,470,327UniSTSGRCm38
MGSCv37868,994,117 - 68,994,226UniSTSGRCm37
Celera869,026,292 - 69,026,401UniSTS
Cytogenetic Map8B3.1-B3.2UniSTS
Whitehead/MRC_RH8714.45UniSTS
D8Mit131  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38865,958,678 - 65,958,804UniSTSGRCm38
MGSCv37868,482,577 - 68,482,703UniSTSGRCm37
Celera868,506,679 - 68,506,799UniSTS
Cytogenetic Map8B3.1-B3.2UniSTS
cM Map833.0UniSTS
Whitehead Genetic835.0UniSTS
Whitehead_YAC8 UniSTS
D8Mit132  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38865,792,939 - 65,793,021UniSTSGRCm38
MGSCv37868,316,838 - 68,316,920UniSTSGRCm37
Celera868,346,416 - 68,346,508UniSTS
Cytogenetic Map8B3.1-B3.2UniSTS
cM Map833.0UniSTS
Whitehead Genetic835.0UniSTS
Whitehead_YAC8 UniSTS
D8Dcr27  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38865,958,700 - 65,958,804UniSTSGRCm38
MGSCv37868,482,599 - 68,482,703UniSTSGRCm37
Celera868,506,701 - 68,506,799UniSTS
Cytogenetic Map8B3.1-B3.2UniSTS
cM Map8 UniSTS
RH126212  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38866,467,525 - 66,467,725UniSTSGRCm38
MGSCv37868,991,424 - 68,991,624UniSTSGRCm37
Celera869,023,599 - 69,023,799UniSTS
Cytogenetic Map8B3.1-B3.2UniSTS
Whitehead/MRC_RH8715.32UniSTS
D7S2538  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38316,620,413 - 16,621,213UniSTSGRCm38
MGSCv37316,520,413 - 16,521,213UniSTSGRCm37
Celera316,630,217 - 16,631,016UniSTS
D7S2538  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38865,960,674 - 65,962,223UniSTSGRCm38
MGSCv37868,484,573 - 68,486,122UniSTSGRCm37
Celera868,508,669 - 68,510,218UniSTS
Cytogenetic Map8B3.1-B3.2UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558870Eae36_mexperimental allergic encephalomyelitis susceptibility 36 (mouse)Not determined81472316071045600Mouse
1357811Orq3_movulation rate QTL 3 (mouse)Not determined83201654471287993Mouse
4141437W10q14_mweight 10 weeks QTL 14 (mouse)Not determined3201654471287993Mouse
4141172W6q9_mweight 6 weeks QTL 9 (mouse)Not determined3201654471287993Mouse
4140966Egq12_mearly growth QTL 12 (mouse)Not determined3201654471287993Mouse
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1301936Trigq2_mtriglyceride QTL 2 (mouse)Not determined83383736267837502Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
1301544Iba3_minduction of brown adipocytes 3 (mouse)Not determined84429488078295025Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84763703081637146Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84763703081637146Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84773713481737254Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84879293982793021Mouse
14746987Manh64_mmandible shape 64 (mouse)85005330684053306Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85005330684053306Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4609
Count of miRNA genes:505
Interacting mature miRNAs:578
Transcripts:ENSMUST00000039540, ENSMUST00000072482, ENSMUST00000098708, ENSMUST00000110253, ENSMUST00000110255, ENSMUST00000110256, ENSMUST00000110258, ENSMUST00000110259, ENSMUST00000152320, ENSMUST00000155804, ENSMUST00000178982
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001166372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001166375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001293784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001363123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001363124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001363125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_175188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006509754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006509755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017312977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017312978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC114634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC117251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC122800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC131655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC139159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC140272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AEKQ02141359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AEKQ02159394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK086052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK089040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB126406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB662698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC066008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE686288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM943350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000039540   ⟹   ENSMUSP00000044070
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl866,386,294 - 66,470,421 (+)Ensembl
RefSeq Acc Id: ENSMUST00000072482   ⟹   ENSMUSP00000072302
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl865,967,157 - 66,471,625 (+)Ensembl
RefSeq Acc Id: ENSMUST00000098708   ⟹   ENSMUSP00000096305
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl866,121,742 - 66,471,625 (+)Ensembl
RefSeq Acc Id: ENSMUST00000110253   ⟹   ENSMUSP00000105882
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl866,386,301 - 66,470,431 (+)Ensembl
RefSeq Acc Id: ENSMUST00000110255   ⟹   ENSMUSP00000105884
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl865,618,086 - 66,471,637 (+)Ensembl
RefSeq Acc Id: ENSMUST00000110256   ⟹   ENSMUSP00000105885
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl865,618,025 - 66,469,713 (+)Ensembl
RefSeq Acc Id: ENSMUST00000110258   ⟹   ENSMUSP00000105887
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl865,618,009 - 66,469,371 (+)Ensembl
RefSeq Acc Id: ENSMUST00000110259   ⟹   ENSMUSP00000105888
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl865,618,525 - 66,470,427 (+)Ensembl
RefSeq Acc Id: ENSMUST00000152320
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl865,617,900 - 66,469,960 (+)Ensembl
RefSeq Acc Id: ENSMUST00000155804
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl865,618,037 - 65,968,328 (+)Ensembl
RefSeq Acc Id: ENSMUST00000178982   ⟹   ENSMUSP00000136545
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl866,121,742 - 66,471,625 (+)Ensembl
RefSeq Acc Id: NM_001166372   ⟹   NP_001159844
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39866,070,692 - 66,924,289 (+)NCBI
GRCm38865,618,040 - 66,471,637 (+)NCBI
MGSCv37868,141,939 - 68,995,536 (+)RGD
Celera868,174,462 - 69,027,711 (+)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001166375   ⟹   NP_001159847
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39866,838,953 - 66,924,289 (+)NCBI
GRCm38866,386,301 - 66,471,637 (+)NCBI
MGSCv37868,141,939 - 68,995,536 (+)RGD
Celera868,174,462 - 69,027,711 (+)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001293784   ⟹   NP_001280713
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39866,070,692 - 66,924,289 (+)NCBI
GRCm38865,618,040 - 66,471,637 (+)NCBI
Celera868,174,462 - 69,027,711 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001363123   ⟹   NP_001350052
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39866,070,692 - 66,924,289 (+)NCBI
GRCm38865,618,040 - 66,471,637 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001363124   ⟹   NP_001350053
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39866,070,692 - 66,924,289 (+)NCBI
GRCm38865,618,040 - 66,471,637 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001363125   ⟹   NP_001350054
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39866,070,692 - 66,924,289 (+)NCBI
GRCm38865,618,040 - 66,471,637 (+)NCBI
Sequence:
RefSeq Acc Id: NM_175188   ⟹   NP_780397
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39866,071,177 - 66,924,289 (+)NCBI
GRCm38865,618,525 - 66,471,637 (+)NCBI
MGSCv37868,141,939 - 68,995,536 (+)RGD
Celera868,174,462 - 69,027,711 (+)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006509754   ⟹   XP_006509817
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39866,574,403 - 66,925,761 (+)NCBI
GRCm38866,386,538 - 66,472,841 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006509755   ⟹   XP_006509818
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39866,839,190 - 66,925,761 (+)NCBI
GRCm38866,386,535 - 66,472,841 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011242329   ⟹   XP_011240631
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39866,574,271 - 66,925,761 (+)NCBI
GRCm38866,121,466 - 66,472,841 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017312977   ⟹   XP_017168466
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39866,574,328 - 66,925,761 (+)NCBI
GRCm38866,121,671 - 66,472,841 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017312978   ⟹   XP_017168467
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39866,419,525 - 66,925,761 (+)NCBI
GRCm38865,966,873 - 66,472,841 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030243793   ⟹   XP_030099653
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39866,070,558 - 66,925,761 (+)NCBI
GRCm38865,618,009 - 66,472,840 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030243794   ⟹   XP_030099654
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39866,413,371 - 66,925,492 (+)NCBI
GRCm38865,966,470 - 66,472,841 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036154313   ⟹   XP_036010206
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39866,070,550 - 66,925,761 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_780397   ⟸   NM_175188
- Peptide Label: isoform 3
- UniProtKB: Q6NZQ8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001159844   ⟸   NM_001166372
- Peptide Label: isoform 1
- UniProtKB: Q6NZQ8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001159847   ⟸   NM_001166375
- Peptide Label: isoform 2
- UniProtKB: Q6NZQ8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006509818   ⟸   XM_006509755
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006509817   ⟸   XM_006509754
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001280713   ⟸   NM_001293784
- Peptide Label: isoform 4
- UniProtKB: Q6NZQ8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011240631   ⟸   XM_011242329
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017168467   ⟸   XM_017312978
- Peptide Label: isoform X5
- UniProtKB: Q6NZQ8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017168466   ⟸   XM_017312977
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_030099653   ⟸   XM_030243793
- Peptide Label: isoform X5
RefSeq Acc Id: NP_001350053   ⟸   NM_001363124
- Peptide Label: isoform 1
RefSeq Acc Id: NP_001350052   ⟸   NM_001363123
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001350054   ⟸   NM_001363125
- Peptide Label: isoform 5
RefSeq Acc Id: XP_030099654   ⟸   XM_030243794
- Peptide Label: isoform X5
RefSeq Acc Id: ENSMUSP00000136545   ⟸   ENSMUST00000178982
RefSeq Acc Id: ENSMUSP00000105882   ⟸   ENSMUST00000110253
RefSeq Acc Id: ENSMUSP00000105884   ⟸   ENSMUST00000110255
RefSeq Acc Id: ENSMUSP00000105885   ⟸   ENSMUST00000110256
RefSeq Acc Id: ENSMUSP00000105887   ⟸   ENSMUST00000110258
RefSeq Acc Id: ENSMUSP00000105888   ⟸   ENSMUST00000110259
RefSeq Acc Id: ENSMUSP00000072302   ⟸   ENSMUST00000072482
RefSeq Acc Id: ENSMUSP00000044070   ⟸   ENSMUST00000039540
RefSeq Acc Id: ENSMUSP00000096305   ⟸   ENSMUST00000098708
RefSeq Acc Id: XP_036010206   ⟸   XM_036154313
- Peptide Label: isoform X6
Protein Domains
RING-CH-type

Promoters
RGD ID:8667179
Promoter ID:EPDNEW_M11621
Type:initiation region
Name:March1_2
Description:Mus musculus membrane-associated ring finger 1 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M11622  EPDNEW_M11623  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38865,618,040 - 65,618,100EPDNEW
RGD ID:8667181
Promoter ID:EPDNEW_M11622
Type:single initiation site
Name:March1_3
Description:Mus musculus membrane-associated ring finger 1 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M11621  EPDNEW_M11623  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38866,024,959 - 66,025,019EPDNEW
RGD ID:8667183
Promoter ID:EPDNEW_M11623
Type:multiple initiation site
Name:March1_1
Description:Mus musculus membrane-associated ring finger 1 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M11621  EPDNEW_M11622  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38866,386,301 - 66,386,361EPDNEW
RGD ID:6843430
Promoter ID:MM_KWN:54555
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour,   Spleen
Transcripts:ENSMUST00000039540,   OTTMUST00000040268
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36868,910,044 - 68,910,544 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1920175 AgrOrtholog
Ensembl Genes ENSMUSG00000036469 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000044070 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000072302 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000096305 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000105882 UniProtKB/Swiss-Prot
  ENSMUSP00000105884 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000105885 UniProtKB/TrEMBL
  ENSMUSP00000105887 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000105888 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000136545 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000039540 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000072482 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000098708 UniProtKB/Swiss-Prot
  ENSMUST00000110253 UniProtKB/Swiss-Prot
  ENSMUST00000110255 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000110256 UniProtKB/TrEMBL
  ENSMUST00000110258 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000110259 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000178982 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Znf_RING-CH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:72925 UniProtKB/Swiss-Prot
MGD MGI:1920175 ENTREZGENE
NCBI Gene 72925 ENTREZGENE
Pfam RINGv UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Marchf1 PhenoGen
PROSITE ZF_RING_CH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RINGv UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Mm.380457 ENTREZGENE
UniProt D3YVY0_MOUSE UniProtKB/TrEMBL
  MARH1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q3U7M8 UniProtKB/Swiss-Prot
  Q3UVF8 UniProtKB/Swiss-Prot
  Q8C294 UniProtKB/Swiss-Prot
  Q8CBA1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-27 Marchf1  membrane associated ring-CH-type finger 1  March1  membrane-associated ring finger (C3HC4) 1  Symbol and/or name change 5135510 APPROVED