Per1 (period circadian clock 1) - Rat Genome Database
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Gene: Per1 (period circadian clock 1) Mus musculus
Analyze
Symbol: Per1
Name: period circadian clock 1
RGD ID: 1552867
MGI Page MGI
Description: Exhibits DNA binding activity; kinase binding activity; and transcription factor binding activity. Involved in several processes, including entrainment of circadian clock by photoperiod; histone modification; and regulation of gene expression. Localizes to nucleus. Is expressed in several structures, including genitourinary system; nervous system; sensory organ; thymus; and tooth. Used to study attention deficit hyperactivity disorder. Orthologous to human PER1 (period circadian regulator 1).
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: circadian clock protein PERIOD 1; circadian pacemaker protein Rigui; Hftm; m-ri; m-rigui; MGC102121; mPe; mPer1; Per; period circadian protein homolog 1; period homolog 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391168,985,934 - 69,000,791 (+)NCBIGRCm39mm39
GRCm381169,095,108 - 69,109,965 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,095,217 - 69,109,960 (+)EnsemblGRCm38mm10GRCm38
MGSCv371168,912,458 - 68,923,462 (+)NCBIGRCm37mm9NCBIm37
MGSCv361168,915,144 - 68,926,155 (+)NCBImm8
Celera1176,042,503 - 76,053,510 (+)NCBICelera
Cytogenetic Map11B3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(+)-epicatechin-3-O-gallate  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
(R)-noradrenaline  (EXP)
(S)-nicotine  (EXP)
1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane  (EXP)
1,2-dimethylhydrazine  (EXP)
15-acetyldeoxynivalenol  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
2-(tert-butylamino)-1-(2-chlorophenyl)ethanol  (ISO)
2-butoxyethanol  (EXP)
2-hydroxypropanoic acid  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (EXP,ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (ISO)
4-hydroxynon-2-enal  (EXP)
5-fluorouracil  (EXP)
9-cis-retinoic acid  (EXP)
acrylamide  (ISO)
all-trans-retinoic acid  (EXP)
amiodarone  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
antirheumatic drug  (ISO)
arsane  (EXP)
arsenic atom  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
beta-naphthoflavone  (EXP)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
bromobenzene  (ISO)
C60 fullerene  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (EXP)
chloroprene  (EXP)
chrysene  (EXP)
ciguatoxin CTX1B  (EXP)
cisplatin  (ISO)
cocaine  (EXP,ISO)
colforsin daropate hydrochloride  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
cortisol  (ISO)
crocidolite asbestos  (ISO)
cyclophosphamide  (EXP)
cyclosporin A  (ISO)
dapsone  (ISO)
dexamethasone  (EXP,ISO)
dibenz[a,h]anthracene  (EXP)
dibutyl phthalate  (ISO)
dichloroacetic acid  (EXP)
dicrotophos  (ISO)
dimethylarsinic acid  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
entinostat  (ISO)
erythromycin estolate  (ISO)
ethanol  (EXP,ISO)
finasteride  (ISO)
fluoranthene  (EXP)
fluoxetine  (EXP)
folic acid  (EXP)
fulvestrant  (ISO)
gallic acid  (ISO)
gallocatechin  (ISO)
haloperidol  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
ketamine  (ISO)
lead diacetate  (EXP)
manganese(II) chloride  (ISO)
melatonin  (ISO)
metformin  (ISO)
methamphetamine  (EXP,ISO)
methotrexate  (EXP)
mifepristone  (ISO)
morphine  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nickel atom  (ISO)
nicotine  (EXP)
ozone  (EXP)
paracetamol  (EXP,ISO)
paraquat  (EXP)
pentachlorophenol  (EXP)
phenformin  (ISO)
phenobarbital  (EXP)
phenylephrine  (EXP)
phorbol 13-acetate 12-myristate  (EXP)
pirinixic acid  (EXP)
prednisolone  (EXP,ISO)
progesterone  (ISO)
rac-lactic acid  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
SCH-351591  (ISO)
silicon dioxide  (EXP)
sodium dichromate  (ISO)
Soman  (ISO)
sulindac  (ISO)
tamoxifen  (EXP)
testosterone  (ISO)
tetraphene  (EXP)
thapsigargin  (ISO)
titanium dioxide  (EXP)
tremolite asbestos  (EXP)
triphenyl phosphate  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
urethane  (ISO)
valdecoxib  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,ISO)
cytosol  (ISO,TAS)
nucleoplasm  (ISO,TAS)
nucleus  (IBA,IDA,ISO)

References

Additional References at PubMed
PMID:3131739   PMID:9323128   PMID:9333243   PMID:9427249   PMID:9428526   PMID:9428527   PMID:9616112   PMID:9856465   PMID:9856466   PMID:9920673   PMID:9988221   PMID:9989497  
PMID:10077321   PMID:10196587   PMID:10208599   PMID:10231394   PMID:10349636   PMID:10428031   PMID:10487202   PMID:10508692   PMID:10521578   PMID:10550049   PMID:10617474   PMID:10807566  
PMID:10837028   PMID:10848614   PMID:10857746   PMID:10899004   PMID:10899319   PMID:11042159   PMID:11076861   PMID:11207804   PMID:11217851   PMID:11232563   PMID:11260262   PMID:11389837  
PMID:11395012   PMID:11483500   PMID:11591712   PMID:11726537   PMID:11752392   PMID:11779462   PMID:11836530   PMID:11865049   PMID:11875063   PMID:11959112   PMID:12024206   PMID:12032351  
PMID:12054191   PMID:12084940   PMID:12150932   PMID:12151001   PMID:12372028   PMID:12383239   PMID:12397359   PMID:12409294   PMID:12477932   PMID:12511614   PMID:12520002   PMID:12531511  
PMID:12535631   PMID:12544823   PMID:12622829   PMID:12693867   PMID:12775559   PMID:12782655   PMID:12809986   PMID:12824769   PMID:12897057   PMID:12930806   PMID:14610273   PMID:14645221  
PMID:14657179   PMID:14701732   PMID:14715703   PMID:15009158   PMID:15031135   PMID:15038852   PMID:15135064   PMID:15147242   PMID:15148313   PMID:15226430   PMID:15368895   PMID:15388282  
PMID:15618518   PMID:15664694   PMID:15741322   PMID:15746913   PMID:15747579   PMID:15782199   PMID:15791269   PMID:15799026   PMID:15817328   PMID:15860628   PMID:15888647   PMID:15947965  
PMID:15959842   PMID:15978557   PMID:16008569   PMID:16141072   PMID:16141073   PMID:16143109   PMID:16249183   PMID:16313500   PMID:16324119   PMID:16421573   PMID:16474407   PMID:16478995  
PMID:16505983   PMID:16537451   PMID:16602821   PMID:16687288   PMID:16717091   PMID:16750171   PMID:16999737   PMID:17051414   PMID:17055980   PMID:17069763   PMID:17198542   PMID:17202855  
PMID:17347670   PMID:17433540   PMID:17462724   PMID:17482552   PMID:17701055   PMID:17715397   PMID:17893678   PMID:17996461   PMID:18057941   PMID:18256599   PMID:18287559   PMID:18316400  
PMID:18321934   PMID:18346860   PMID:18367514   PMID:18375863   PMID:18472091   PMID:18487196   PMID:18779586   PMID:18786554   PMID:18799693   PMID:18945877   PMID:19005049   PMID:19038280  
PMID:19078963   PMID:19222558   PMID:19274088   PMID:19414593   PMID:19437502   PMID:19477955   PMID:19523042   PMID:19587447   PMID:19589858   PMID:19616057   PMID:19625730   PMID:19637242  
PMID:19718444   PMID:19740747   PMID:19815775   PMID:19829696   PMID:19840112   PMID:19916834   PMID:19917250   PMID:19923301   PMID:19926612   PMID:19926812   PMID:19948962   PMID:20043880  
PMID:20059953   PMID:20106950   PMID:20159955   PMID:20180860   PMID:20211142   PMID:20352049   PMID:20370466   PMID:20436479   PMID:20450826   PMID:20539819   PMID:20560710   PMID:20824053  
PMID:20826680   PMID:20829506   PMID:20849936   PMID:20861012   PMID:20868778   PMID:20930143   PMID:20932939   PMID:21156215   PMID:21179498   PMID:21264262   PMID:21267068   PMID:21268064  
PMID:21285316   PMID:21382453   PMID:21420468   PMID:21454290   PMID:21525287   PMID:21549097   PMID:21624349   PMID:21680841   PMID:21747211   PMID:21773940   PMID:21793695   PMID:21828288  
PMID:21873635   PMID:21966515   PMID:22124155   PMID:22140039   PMID:22154820   PMID:22159024   PMID:22215611   PMID:22236088   PMID:22238756   PMID:22331899   PMID:22405069   PMID:22465780  
PMID:22526258   PMID:22558277   PMID:22622901   PMID:22767893   PMID:22801371   PMID:22891330   PMID:22936566   PMID:22966205   PMID:23024437   PMID:23039899   PMID:23079727   PMID:23110090  
PMID:23133559   PMID:23213472   PMID:23223373   PMID:23267082   PMID:23285241   PMID:23351077   PMID:23402528   PMID:23443664   PMID:23469952   PMID:23555304   PMID:23604021   PMID:23608482  
PMID:23690615   PMID:23717599   PMID:23785138   PMID:23824961   PMID:23869717   PMID:23883486   PMID:23977055   PMID:24003036   PMID:24091726   PMID:24099911   PMID:24144995   PMID:24154698  
PMID:24336415   PMID:24378737   PMID:24413057   PMID:24506873   PMID:24527953   PMID:24550127   PMID:24598427   PMID:24599460   PMID:24603368   PMID:24610784   PMID:24682205   PMID:24721511  
PMID:24737000   PMID:24770415   PMID:24837677   PMID:24857656   PMID:24952961   PMID:25127877   PMID:25194046   PMID:25238854   PMID:25397888   PMID:25417104   PMID:25431853   PMID:25459888  
PMID:25673850   PMID:25689298   PMID:25821984   PMID:25862660   PMID:26026603   PMID:26166747   PMID:26232227   PMID:26323038   PMID:26332085   PMID:26377793   PMID:26456331   PMID:26471974  
PMID:26553726   PMID:26617050   PMID:26781276   PMID:26808220   PMID:26862173   PMID:27021954   PMID:27054331   PMID:27168152   PMID:27246400   PMID:27609640   PMID:27636900   PMID:27688755  
PMID:27773697   PMID:27791392   PMID:27889186   PMID:27912059   PMID:28286126   PMID:28402850   PMID:28416676   PMID:28486525   PMID:28625127   PMID:28710114   PMID:28827343   PMID:28886335  
PMID:29138421   PMID:29269828   PMID:29357420   PMID:29478834   PMID:29626648   PMID:29935055   PMID:29982483   PMID:30127461   PMID:30242505   PMID:30427705   PMID:30452546   PMID:30759025  
PMID:30773466   PMID:30944082   PMID:31006590   PMID:31189119   PMID:31211910   PMID:31260634   PMID:31797953   PMID:31848250   PMID:31875550   PMID:31919902   PMID:32325033   PMID:32555162  
PMID:32681096   PMID:32819596   PMID:33443219  


Genomics

Comparative Map Data
Per1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391168,985,934 - 69,000,791 (+)NCBIGRCm39mm39
GRCm381169,095,108 - 69,109,965 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,095,217 - 69,109,960 (+)EnsemblGRCm38mm10GRCm38
MGSCv371168,912,458 - 68,923,462 (+)NCBIGRCm37mm9NCBIm37
MGSCv361168,915,144 - 68,926,155 (+)NCBImm8
Celera1176,042,503 - 76,053,510 (+)NCBICelera
Cytogenetic Map11B3NCBI
PER1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl178,140,472 - 8,156,506 (-)EnsemblGRCh38hg38GRCh38
GRCh38178,140,470 - 8,156,360 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37178,043,790 - 8,055,722 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh37178,043,788 - 8,059,723 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36177,984,515 - 7,996,427 (-)NCBINCBI36hg18NCBI36
Build 34177,984,514 - 7,996,427NCBI
Celera178,071,402 - 8,083,393 (-)NCBI
Cytogenetic Map17p13.1NCBI
HuRef177,938,702 - 7,950,693 (-)NCBIHuRef
CHM1_1178,052,563 - 8,064,533 (-)NCBICHM1_1
Per1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21053,800,126 - 53,814,963 (+)NCBI
Rnor_6.0 Ensembl1055,687,050 - 55,695,994 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01055,681,761 - 55,696,557 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01055,424,863 - 55,439,853 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41055,859,851 - 55,868,747 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11055,873,530 - 55,882,148 (+)NCBI
Celera1052,971,073 - 52,979,969 (+)NCBICelera
Cytogenetic Map10q24NCBI
Per1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554678,797,912 - 8,813,365 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554678,798,436 - 8,813,369 (+)NCBIChiLan1.0ChiLan1.0
PER1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11748,234,360 - 48,250,391 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1748,234,360 - 48,250,391 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01743,502,080 - 43,518,098 (+)NCBIMhudiblu_PPA_v0panPan3
PER1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl532,957,127 - 32,968,465 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1532,957,517 - 32,972,368 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Per1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365951,366,883 - 1,382,138 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PER1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1253,361,868 - 53,376,611 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11253,361,863 - 53,376,723 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21255,836,920 - 55,851,890 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PER1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1167,520,122 - 7,536,176 (-)NCBI
ChlSab1.1 Ensembl167,520,006 - 7,531,940 (-)Ensembl
Per1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478610,706,495 - 10,722,110 (-)NCBI

Position Markers
Per1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371168,922,873 - 68,922,988UniSTSGRCm37
Celera1176,052,921 - 76,053,036UniSTS
Cytogenetic Map11BUniSTS
cM Map11 UniSTS
Per1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11BUniSTS
Per1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381169,109,371 - 69,109,486UniSTSGRCm38
MGSCv371168,922,873 - 68,922,988UniSTSGRCm37
Celera1176,052,921 - 76,053,036UniSTS
Cytogenetic Map11BUniSTS
cM Map11 UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11330000072800000Mouse
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111231863769794121Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113568778969794161Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113661246070618665Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113672273870723028Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113719011571190238Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113812528972125383Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114236579176365904Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114236579176365904Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114473921176963931Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4141000Nidd3_mnon-insulin-dependent diabetes mellitus 3 (mouse)Not determined4515120179151308Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5539415972319101Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115859972974863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5882844085175703Mouse
11532697Sluc36_msusceptibility to lung cancer 36 (mouse)115936579169591873Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116179599488808902Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116226517996265327Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116342858181939647Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116342858194173092Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116493951098939647Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116493951098939647Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116493951098939647Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166842594100842826Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166842594100842826Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66842594100842826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166842594100842826Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166842594100842826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166842594100842826Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116718736579923086Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168300000102000000Mouse
36049778Ars6_mantibody response to SARS-CoV 6, day 15, IgM (mouse)116910000072600000Mouse
36049779Ars7_mantibody response to SARS-CoV 7, day 29, IgG1 (mouse)116910000072600000Mouse
36049784Ars8_mantibody response to SARS-CoV 8, day 29, IgG2a+IgG2c (mouse)116910000072600000Mouse
36049785Ars9_mantibody response to SARS-CoV 9, day 29, IgM (mouse)116910000072600000Mouse
36049786Ars10_mantibody response to SARS-CoV 10, 4 days post-rechallenge, IgG2a+IgG2c (mouse)116910000072600000Mouse
36049787Ars11_mantibody response to SARS-CoV 11, 4 days post-rechallenge, IgM (mouse)116910000072600000Mouse
36049788Ars1_mantibody response to SARS-CoV 1, day 7, IgG1 (mouse)116910000072600000Mouse
36049789Ars2_mantibody response to SARS-CoV 2, day 7, IgG2a+IgG2c (mouse)116910000072600000Mouse
36049790Ars3_mantibody response to SARS-CoV 3, day 7, IgG2b (mouse)116910000072600000Mouse
36049791Ars4_mantibody response to SARS-CoV 4, day 7, IgG3 (mouse)116910000072600000Mouse
36049792Ars5_mantibody response to SARS-CoV 5, day 7, IgM (mouse)116910000072600000Mouse
35673314Ari2_mantibody response to influenza 2, day 10, IgG3 (mouse)116910000072600000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1999
Count of miRNA genes:587
Interacting mature miRNAs:736
Transcripts:ENSMUST00000021271, ENSMUST00000101004, ENSMUST00000102605, ENSMUST00000132462, ENSMUST00000142392, ENSMUST00000166748
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001159367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA051328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB002108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB030818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF022992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF223952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK081813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL645527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC039768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC091645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP772916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LXEJ02005017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000021271   ⟹   ENSMUSP00000021271
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1169,098,948 - 69,109,960 (+)Ensembl
RefSeq Acc Id: ENSMUST00000101004   ⟹   ENSMUSP00000098566
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1169,095,217 - 69,106,458 (+)Ensembl
RefSeq Acc Id: ENSMUST00000102605   ⟹   ENSMUSP00000099665
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1169,100,522 - 69,109,960 (+)Ensembl
RefSeq Acc Id: ENSMUST00000132462   ⟹   ENSMUSP00000122164
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1169,100,152 - 69,101,048 (+)Ensembl
RefSeq Acc Id: ENSMUST00000142392   ⟹   ENSMUSP00000121713
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1169,100,509 - 69,106,296 (+)Ensembl
RefSeq Acc Id: ENSMUST00000166748   ⟹   ENSMUSP00000132635
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1169,100,158 - 69,109,948 (+)Ensembl
RefSeq Acc Id: NM_001159367   ⟹   NP_001152839
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391168,990,978 - 69,000,786 (+)NCBI
GRCm381169,100,152 - 69,109,960 (+)NCBI
MGSCv371168,912,458 - 68,923,462 (+)RGD
Celera1176,042,503 - 76,053,510 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_011065   ⟹   NP_035195
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391168,989,775 - 69,000,786 (+)NCBI
GRCm381169,098,949 - 69,109,960 (+)NCBI
MGSCv371168,912,458 - 68,923,462 (+)RGD
Celera1176,042,503 - 76,053,510 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006532480   ⟹   XP_006532543
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391168,985,934 - 69,000,791 (+)NCBI
GRCm381169,095,108 - 69,109,965 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006532481   ⟹   XP_006532544
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391168,986,211 - 69,000,779 (+)NCBI
GRCm381169,095,388 - 69,109,965 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030245657   ⟹   XP_030101517
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391168,985,937 - 69,000,779 (+)NCBI
GRCm381169,095,111 - 69,109,965 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156420   ⟹   XP_036012313
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391168,986,211 - 69,000,791 (+)NCBI
RefSeq Acc Id: XM_036156421   ⟹   XP_036012314
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391168,986,212 - 69,000,779 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_035195   ⟸   NM_011065
- UniProtKB: O35973 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001152839   ⟸   NM_001159367
- UniProtKB: O35973 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006532543   ⟸   XM_006532480
- Peptide Label: isoform X1
- UniProtKB: O35973 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006532544   ⟸   XM_006532481
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_030101517   ⟸   XM_030245657
- Peptide Label: isoform X2
RefSeq Acc Id: ENSMUSP00000122164   ⟸   ENSMUST00000132462
RefSeq Acc Id: ENSMUSP00000132635   ⟸   ENSMUST00000166748
RefSeq Acc Id: ENSMUSP00000098566   ⟸   ENSMUST00000101004
RefSeq Acc Id: ENSMUSP00000021271   ⟸   ENSMUST00000021271
RefSeq Acc Id: ENSMUSP00000121713   ⟸   ENSMUST00000142392
RefSeq Acc Id: ENSMUSP00000099665   ⟸   ENSMUST00000102605
RefSeq Acc Id: XP_036012313   ⟸   XM_036156420
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036012314   ⟸   XM_036156421
- Peptide Label: isoform X4
Protein Domains
PAC   PAS

Promoters
RGD ID:6821527
Promoter ID:MM_KWN:8031
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000101004
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361168,908,196 - 68,909,187 (+)MPROMDB
RGD ID:6821526
Promoter ID:MM_KWN:8032
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000013334
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361168,911,876 - 68,912,617 (+)MPROMDB
RGD ID:6821528
Promoter ID:MM_KWN:8033
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000102605,   OTTMUST00000013337,   OTTMUST00000013338,   UC007JPH.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361168,913,366 - 68,914,402 (+)MPROMDB
RGD ID:6846879
Promoter ID:MM_ACW:7813
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:PER1.ESEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361168,917,751 - 68,918,251 (+)MPROMDB
RGD ID:6846877
Promoter ID:MM_ACW:7814
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day3,   3T3L1_Day4,   Brain,   Kidney,   Liver,   Lung
Transcripts:PER1.FSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361168,921,246 - 68,923,367 (+)MPROMDB
RGD ID:8675146
Promoter ID:EPDNEW_M15604
Type:initiation region
Name:Per1_1
Description:Mus musculus period circadian clock 1 , transcript variant 2,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15605  EPDNEW_M15606  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381169,095,281 - 69,095,341EPDNEW
RGD ID:8675148
Promoter ID:EPDNEW_M15605
Type:multiple initiation site
Name:Per1_3
Description:Mus musculus period circadian clock 1 , transcript variant 2,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15604  EPDNEW_M15606  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381169,096,573 - 69,096,633EPDNEW
RGD ID:8675150
Promoter ID:EPDNEW_M15606
Type:initiation region
Name:Per1_2
Description:Mus musculus period circadian clock 1 , transcript variant 2,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15604  EPDNEW_M15605  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381169,098,924 - 69,098,984EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1098283 AgrOrtholog
Ensembl Genes ENSMUSG00000020893 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000021271 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000098566 UniProtKB/TrEMBL
  ENSMUSP00000099665 UniProtKB/TrEMBL
  ENSMUSP00000121713 UniProtKB/TrEMBL
  ENSMUSP00000122164 UniProtKB/TrEMBL
  ENSMUSP00000132635 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000021271 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000101004 UniProtKB/TrEMBL
  ENSMUST00000102605 UniProtKB/TrEMBL
  ENSMUST00000132462 UniProtKB/TrEMBL
  ENSMUST00000142392 UniProtKB/TrEMBL
  ENSMUST00000166748 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro PAS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAS-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAS_fold_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Period_circadian-like_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:18626 UniProtKB/Swiss-Prot
MGD MGI:1098283 ENTREZGENE
NCBI Gene 18626 ENTREZGENE
Pfam PAS_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Period_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Per1 PhenoGen
PROSITE PAS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART PAS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF55785 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B0QZN6_MOUSE UniProtKB/TrEMBL
  E9Q8V5_MOUSE UniProtKB/TrEMBL
  O35973 ENTREZGENE, UniProtKB/Swiss-Prot
  Q3U378_MOUSE UniProtKB/TrEMBL
  Q3UFZ7_MOUSE UniProtKB/TrEMBL
  Q5BJ30_MOUSE UniProtKB/TrEMBL
  Q6A060_MOUSE UniProtKB/TrEMBL
  Q8C4K7_MOUSE UniProtKB/TrEMBL
  Q8CHR1_MOUSE UniProtKB/TrEMBL
UniProt Secondary B1ASX0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-01-08 Per1  period circadian clock 1    period homolog 1 (Drosophila)  Symbol and/or name change 5135510 APPROVED