Ubb (ubiquitin B) - Rat Genome Database

Name: Ubb
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Ubb (ubiquitin B) Mus musculus

Analyze

Symbol:

Ubb

Name:

ubiquitin B

RGD ID:

1552783

MGI Page

MGI

Description:

Predicted to have protein tag and ubiquitin protein ligase binding activity. Involved in animal organ development; energy homeostasis; and meiosis I. Localizes to myelin sheath. Is expressed in oocyte. Orthologous to human UBB (ubiquitin B).

Type:

protein-coding

RefSeq Status:

REVIEWED

Also known as:

AL033289; polyubiquitin-B; Rps27a; Uba52; Ubb2; Ubc; ubiquitin

RGD Orthologs

Human

Rat

Bonobo

Dog

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	UBB (ubiquitin B)	HGNC	Ensembl, HGNC, Inparanoid, NCBI, OMA, Treefam
Rattus norvegicus (Norway rat):	Ubb (ubiquitin B)	RGD	RGD
Pan paniscus (bonobo/pygmy chimpanzee):	UBB (ubiquitin B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	UBB (ubiquitin B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	UBB (ubiquitin B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	UBB (ubiquitin B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ubb (ubiquitin B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	UBC (ubiquitin C)	HGNC	OrthoDB, Panther, PhylomeDB
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Ubb (ubiquitin B)	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector)
Homo sapiens (human):	UBB (ubiquitin B)	Alliance	DIOPT (Ensembl Compara\|HGNC\|InParanoid\|OMA\|Roundup\|TreeFam)
Danio rerio (zebrafish):	ubb (ubiquitin B)	Alliance	DIOPT (OMA\|ZFIN)
Danio rerio (zebrafish):	ubc (ubiquitin C)	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER\|Roundup)
Drosophila melanogaster (fruit fly):	CG11700	Alliance	DIOPT (Ensembl Compara\|OMA\|TreeFam)
Caenorhabditis elegans (roundworm):	ubq-1	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|Roundup)
Drosophila melanogaster (fruit fly):	Ubi-p5E	Alliance	DIOPT (OMA\|PANTHER\|Roundup)
Saccharomyces cerevisiae (baker's yeast):	UBI4	Alliance	DIOPT (Ensembl Compara\|OMA\|PhylomeDB\|Roundup)
Drosophila melanogaster (fruit fly):	Ubi-p63E	Alliance	DIOPT (OMA\|OrthoFinder\|PhylomeDB\|Roundup)

Related Pseudogenes:

Gm8797 Ubb-ps

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	62,441,997 - 62,444,039 (+)	NCBI	GRCm39		mm39
GRCm38	11	62,551,171 - 62,553,213 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	62,551,171 - 62,553,213 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	62,365,006 - 62,366,714 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	11	62,367,697 - 62,369,407 (+)	NCBI			mm8
Celera	11	69,470,925 - 69,472,633 (+)	NCBI		Celera
Cytogenetic Map	11	B2	NCBI
cM Map	11	38.46	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(S)-nicotine (EXP)

1,2-dimethylhydrazine (EXP)

1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (EXP)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3',4,4',5-Pentachlorobiphenyl (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,3'-diindolylmethane (ISO)

4,4'-diaminodiphenylmethane (EXP)

4-hydroperoxycyclophosphamide (EXP)

ammonium chloride (ISO)

Aroclor 1254 (EXP)

astaxanthin (EXP)

Azaspiracid (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (EXP)

bisphenol A (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

cadmium sulfate (ISO)

caffeine (EXP)

calcium atom (ISO)

calcium(0) (ISO)

carbon nanotube (EXP,ISO)

chloropicrin (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

cypermethrin (ISO)

cyproconazole (EXP)

dinophysistoxin 1 (ISO)

doxorubicin (ISO)

epoxiconazole (EXP)

ethanol (EXP)

flavonoids (ISO)

folic acid (EXP)

isoprenaline (EXP)

maneb (EXP)

manganese(II) chloride (ISO)

melatonin (EXP)

menadione (ISO)

methylisothiazolinone (ISO)

nickel atom (EXP)

nicotine (EXP)

ochratoxin A (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

paraquat (EXP,ISO)

pentachlorophenol (EXP)

phlorizin (EXP)

propiconazole (EXP)

pyrogallol (EXP)

quercetin (ISO)

raloxifene (ISO)

resveratrol (ISO)

silicon dioxide (ISO)

sunitinib (ISO)

toluene (ISO)

valproic acid (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adipose tissue development (IMP)

energy homeostasis (IMP)

fat pad development (IMP)

female gonad development (IMP)

female meiosis I (IMP)

hypothalamus gonadotrophin-releasing hormone neuron development (IMP)

male gonad development (IMP)

male meiosis I (IMP)

mitochondrion transport along microtubule (ISO)

modification-dependent protein catabolic process (IBA)

neuron projection morphogenesis (ISO)

positive regulation of intrinsic apoptotic signaling pathway by p53 class mediator (ISO)

positive regulation of protein monoubiquitination (ISO)

positive regulation of protein ubiquitination (ISO)

protein ubiquitination (IBA)

regulation of mitochondrial membrane potential (ISO)

regulation of neuron death (ISO)

regulation of proteasomal protein catabolic process (ISO)

seminiferous tubule development (IMP)

Cellular Component

cytoplasm (IBA)

cytosol (TAS)

mitochondrion (ISO)

myelin sheath (HDA)

neuron projection (ISO)

neuronal cell body (ISO)

nucleoplasm (TAS)

nucleus (IBA)

Molecular Function

protein binding (ISO)

protein tag (IBA)

ubiquitin protein ligase binding (IBA)

Molecular Pathway Annotations Click to see Annotation Detail View

Parkinson's disease pathway (IEA)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal energy homeostasis (IAGP)

abnormal female meiosis (IAGP)

abnormal gametogenesis (IAGP)

abnormal hypothalamus morphology (IAGP)

abnormal oocyte morphology (IAGP)

abnormal ovulation (IAGP)

abnormal secondary ovarian follicle morphology (IAGP)

arrest of male meiosis (IAGP)

decreased body length (IAGP)

decreased body size (IAGP)

decreased compensatory feeding amount (IAGP)

decreased corpora lutea number (IAGP)

decreased male germ cell number (IAGP)

decreased mature ovarian follicle number (IAGP)

decreased oocyte number (IAGP)

decreased ovary weight (IAGP)

decreased retinal rod cell number (IAGP)

female infertility (IAGP)

increased circulating leptin level (IAGP)

increased susceptibility to age related obesity (IAGP)

increased total body fat amount (IAGP)

male infertility (IAGP)

neuron degeneration (IAGP)

postnatal growth retardation (IAGP)

retinal degeneration (IAGP)

retinal rod cell degeneration (IAGP)

small ovary (IAGP)

small seminiferous tubules (IAGP)

small testis (IAGP)

testicular atrophy (IAGP)

testis degeneration (IAGP)

thin retinal outer nuclear layer (IAGP)

thin zona pellucida (IAGP)

References

References - curated


1.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2.	Ko MS, etal., Hum Mol Genet 1998 Nov;7(12):1967-78.
3.	MGD data from the GO Consortium
4.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5.	OMIM Disease Annotation Pipeline
6.	Pipeline to import KEGG annotations from KEGG into RGD
7.	RGD automated import pipeline
8.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:1321656	PMID:2159627	PMID:3004776	PMID:7671812	PMID:8631027	PMID:8835546	PMID:8889548	PMID:9321482	PMID:9653646	PMID:10349636	PMID:10922068	PMID:11042159
PMID:11076861	PMID:12040188	PMID:12477932	PMID:12904583	PMID:14610273	PMID:15102471	PMID:15210114	PMID:15265030	PMID:15489334	PMID:15761153	PMID:15782199	PMID:16141072
PMID:16141073	PMID:16416089	PMID:16458478	PMID:17015433	PMID:17062627	PMID:17110338	PMID:17242355	PMID:17571083	PMID:17634366	PMID:18070917	PMID:18162470	PMID:18299572
PMID:18799693	PMID:19427866	PMID:19754430	PMID:19837032	PMID:20002312	PMID:20005957	PMID:21542049	PMID:21565611	PMID:21647563	PMID:21677750	PMID:21690297	PMID:21873635
PMID:22285186	PMID:22354994	PMID:22393459	PMID:24450463	PMID:25280998	PMID:25294940	PMID:25391618	PMID:25701757	PMID:26150391	PMID:27695001	PMID:27966098	PMID:28285139
PMID:28413018	PMID:28414809	PMID:29422555	PMID:29459677	PMID:29632206	PMID:30713523	PMID:30935687	PMID:32290105	PMID:32321641	PMID:32325033

Genomics

Comparative Map Data

Ubb
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	62,441,997 - 62,444,039 (+)	NCBI	GRCm39		mm39
GRCm38	11	62,551,171 - 62,553,213 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	62,551,171 - 62,553,213 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	62,365,006 - 62,366,714 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	11	62,367,697 - 62,369,407 (+)	NCBI			mm8
Celera	11	69,470,925 - 69,472,633 (+)	NCBI		Celera
Cytogenetic Map	11	B2	NCBI
cM Map	11	38.46	NCBI

UBB
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	17	16,380,798 - 16,382,745 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	17	16,380,779 - 16,382,745 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	17	16,284,367 - 16,286,059 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	17	16,284,093 - 16,286,059 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	16,225,092 - 16,226,779 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	17	16,225,091 - 16,226,779	NCBI
Celera	17	16,187,292 - 16,188,979 (+)	NCBI
Cytogenetic Map	17	p11.2	NCBI
HuRef	17	16,150,949 - 16,152,636 (+)	NCBI		HuRef
CHM1_1	17	16,293,846 - 16,295,798 (+)	NCBI		CHM1_1

Ubb
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	10	47,247,629 - 47,249,335 (+)	NCBI
Rnor_6.0 Ensembl	10	48,881,049 - 48,881,881 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	10	48,880,231 - 48,881,896 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	10	48,664,227 - 48,665,056 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.1	10	48,752,613 - 48,753,069	NCBI
Celera	10	46,494,897 - 46,496,578 (+)	NCBI		Celera
Cytogenetic Map	10	q23	NCBI

UBB
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	2A	110,578,715 - 110,580,217 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
Mhudiblu_PPA_v0	17	35,286,699 - 35,288,429 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

UBB
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	5	39,511,426 - 39,535,815 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	5	39,533,365 - 39,535,120 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

UBB
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	59,171,289 - 59,172,841 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	59,171,258 - 59,172,841 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	62,297,981 - 62,299,561 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

UBB
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	15,279,271 - 15,289,111 (-)	NCBI

Ubb
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624877	4,050,188 - 4,051,849 (-)	NCBI

Position Markers

D17950

Mouse Assembly	Chr	Position (strand)	Source
Cytogenetic Map	11	B2	UniSTS
cM Map	11	35.0	UniSTS
Whitehead_YAC	14		UniSTS

RH124192

Mouse Assembly	Chr	Position (strand)	Source
Cytogenetic Map	14	C1	UniSTS
Cytogenetic Map	11	B2	UniSTS
cM Map	11	35.0	UniSTS

Ubc

Mouse Assembly	Chr	Position (strand)	Source
Cytogenetic Map	5	G1.1	UniSTS
Cytogenetic Map	14	C1	UniSTS
Cytogenetic Map	11	B2	UniSTS
cM Map	5	64.18	UniSTS

Ubb

Mouse Assembly	Chr	Position (strand)	Source
Cytogenetic Map	11	B2	UniSTS
Cytogenetic Map	14	C1	UniSTS
cM Map	11	38.46	UniSTS

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
26884446	Sklq10_m	skull length QTL 10, 10 week (mouse)					11	3300000	63000000	Mouse
26884453	Sklq16_m	skull length QTL 16, 16 week (mouse)					11	3300000	72800000	Mouse
13208559	Wght10_m	weight 10 (mouse)					11	4000000	89000000	Mouse
13208558	Lgth12_m	body length 12 (mouse)					11	4000000	95000000	Mouse
1300905	Scc6_m	colon tumor susceptibility 6 (mouse)			Not determined		11	6930277	89128908	Mouse
26884401	Huml4_m	humerus length 4, 10 week (mouse)					11	11600000	68600000	Mouse
27226762	Feml21_m	femur length 21, 16 week (mouse)					11	11800000	66100000	Mouse
4141966	Tailq1_m	tail length QTL 1 (mouse)			Not determined			12318637	68609504	Mouse
1357851	Scfq3_m	subcutaneous fat pad weight QTL 3 (mouse)			Not determined		11	12318637	68609504	Mouse
1357437	Epfq4_m	epididymal fat pad weight QTL 4 (mouse)			Not determined		11	12318637	68609504	Mouse
4141127	W3q4_m	weight 3 weeks QTL 4 (mouse)			Not determined			12318637	68609504	Mouse
4142216	Lgq1_m	late growth QTL 1 (mouse)			Not determined			12318637	68609504	Mouse
4142308	W6q3_m	weight 6 weeks QTL 3 (mouse)			Not determined		11	12318637	68609504	Mouse
4141582	Lgaq1_m	late growth adjusted QTL 1 (mouse)			Not determined			12318637	68609504	Mouse
4142109	W10q2_m	weight 10 weeks QTL 2 (mouse)			Not determined			12318637	68609504	Mouse
4141470	Egq4_m	early growth QTL 4 (mouse)			Not determined			12318637	68609504	Mouse
1357640	Orq2_m	ovulation rate QTL 2 (mouse)			Not determined		11	12318637	68609504	Mouse
1357720	Kidpq1_m	kidney weight percentage QTL 1 (mouse)			Not determined		11	12318637	68609504	Mouse
1559002	Lmrq4_m	Leishmania major resistance QTL 4 (mouse)			Not determined		11	12318637	69794121	Mouse
1357859	Lvrq7_m	liver weight QTL 7 (mouse)			Not determined		11	12318637	118131898	Mouse
39128214	Lwq20_m	liver weight QTL 20 (mouse)					11	12318637	118131898	Mouse
1558945	Orgwq8_m	organ weight QTL 8 (mouse)			Not determined		11	17106175	67187585	Mouse
10053687	Eae6_m	susceptibility to experimental allergic encephalomyelitis 6 (mouse)			Not determined		11	17831966	68609504	Mouse
4141894	Nidd6k_m	Nidd6 on KK-A (mouse)			Not determined			19174204	97007000	Mouse
10412246	Dfs2_m	dental fluorosis suseptibility 2 (mouse)			Not determined		11	21857364	95990405	Mouse
13524848	Ppiq7_m	prepulse inhibition QTL 7 (mouse)					11	28678320	62678320	Mouse
1301426	Desp2_m	despair 2 (mouse)			Not determined		11	28817754	62817873	Mouse
11522752	Cocia18_m	cocaine-induced activity, QTL 18 (mouse)					11	31117382	65117382	Mouse
11059563	Lmr31_m	leishmaniasis resistance 31 (mouse)					11	32209750	66209867	Mouse
1357782	Char8_m	P. chabaudi malaria resistance QTL 8 (mouse)			Not determined		11	35687789	69794161	Mouse
13208569	Bmiq10_m	body mass index QTL 10 (mouse)					11	36000000	85000000	Mouse
1301328	Mol4_m	modifier of LPS-response 4 (mouse)			Not determined		11	36391750	83590530	Mouse
1301788	Lbw8_m	lupus NZB x NZW 8 (mouse)			Not determined		11	36612460	70618665	Mouse
1301896	Tria1_m	T-cell receptor induced activation 1 (mouse)			Not determined		11	36722738	70723028	Mouse
4141853	Skmw17_m	skeletal muscle weight 17 (mouse)			Not determined		11	37190115	71190238	Mouse
10766457	Nwa3_m	New Zealand White autoimmunity 3 (mouse)					11	38125289	72125383	Mouse
11532698	Sluc36a_m	susceptibility to lung cancer 36a (mouse)					11	42365791	76365904	Mouse
11532699	Sluc36b_m	susceptibility to lung cancer 36b (mouse)					11	42365791	76365904	Mouse
4142300	Ctrq3_m	C. trachomatis resistance QTL 3 (mouse)			Not determined		11	44739211	76963931	Mouse
4141367	Inf1_m	acute ozone induced inflammation (mouse)			Not determined			44739211	113167183	Mouse
4141000	Nidd3_m	non-insulin-dependent diabetes mellitus 3 (mouse)			Not determined			45151201	79151308	Mouse
1302021	Nidd1n_m	non-insulin-dependent diabetes mellitus 1 in NSY (mouse)			Not determined		11	45275046	80087498	Mouse
1357878	Mastr_m	modifier of astrocytoma (mouse)			Not determined		11	45817754	89927907	Mouse
1300765	Bbaa4_m	B.burgdorferi-associated arthritis 4 (mouse)			Not determined		11	46294341	80294436	Mouse
1301988	Bmd11_m	bone mineral density 11 (mouse)			Not determined		11	46428581	80428696	Mouse
1301830	Ssta4_m	susceptibility to Salmonella typhimurium antigens 4 (mouse)			Not determined		11	50187365	84187585	Mouse
13524840	Ppiq9a_m	prepulse inhibition QTL 9a (mouse)					11	52603559	86603559	Mouse
1300774	Pgia7_m	proteoglycan induced arthritis 7 (mouse)			Not determined		11	53499762	87499911	Mouse
4141084	Spqq1_m	sperm quality QTL 1 (mouse)			Not determined			54174844	63428696	Mouse
1302186	Blmpf2_m	bleomycin-induced pulmonary fibrosis 2 (mouse)			Not determined		11	54174844	67187585	Mouse
4142148	Ckdbp2_m	chronic kidney disease blood pressure locus 2 (mouse)			Not determined		11	54190115	65213015	Mouse
4141830	Pregq1_m	pregnancy QTL 1 (mouse)			Not determined		11	54235926	83842826	Mouse
4141875	Etax9_m	ethanol induced ataxia 9 (mouse)			Not determined			55394159	72319101	Mouse
4142121	Tmc1m2_m	Tmc1 modifier 2 (mouse)			Not determined		11	56973201	114267131	Mouse
1300664	Etohcta9_m	ethanol conditioned taste aversion 9 (mouse)			Not determined		11	57863834	91863932	Mouse
10053682	Eae45_m	experimental allergic encephalomyelitis susceptibility 45 (mouse)			Not determined		11	58599729	74863932	Mouse
1300924	Ity2_m	immunity to S. typhimurium 2 (mouse)			Not determined		1	58617204	87804412	Mouse
4141982	Skts-fp2_m	skin tumor susceptibility in FVB and PWK 2 (mouse)			Not determined			58828440	85175703	Mouse
11532697	Sluc36_m	susceptibility to lung cancer 36 (mouse)					11	59365791	69591873	Mouse
1301987	Pid3_m	prior incubation determinant 3 (mouse)			Not determined		11	61795994	88808902	Mouse
1301319	Dautb4_m	dopamine uptake transporter binding 4 (mouse)			Not determined		11	62265179	96265327	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	241
Count of miRNA genes:	212
Interacting mature miRNAs:	224
Transcripts:	ENSMUST00000019649, ENSMUST00000136938
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001313984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_011664	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AI836769	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK003190	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK007273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK010413	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK010625	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK012443	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK013027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK013873	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK132747	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK160683	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK165313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL596181	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC019850	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC100341	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY083861	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466601	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DV653535	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	M81745	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X51703	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000019649 ⟹ ENSMUSP00000019649

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	11	62,551,171 - 62,553,213 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000136938 ⟹ ENSMUSP00000117361

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	11	62,551,676 - 62,552,853 (+)	Ensembl

RefSeq Acc Id:

NM_001313984 ⟹ NP_001300913

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	11	62,442,557 - 62,444,039 (+)	NCBI
GRCm38	11	62,551,731 - 62,553,213 (+)	NCBI

Sequence:

show sequence

TGGGCCTTGGTCGCGTGCGCGGAGCGGGGGCGGCCCTGGCGCGCGCGCCAGGGAGCTTAACGGA
CGCTTAACCGATGGAGAGTCCATCGTGGTTATTTCAGTGGGGGGAGGCAGAAAAGAGGTCAAAA
TGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAGCCCAGTGACAC
CATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGACCAGCAGAGGCTG
ATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGATTACAACATCCAGAAGGAGT
CAACCCTGCACCTGGTCCTTCGCCTGAGAGGTGGCATGCAGATCTTCGTGAAGACCCTGACCGG
CAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAG
GATAAAGAGGGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATG
GCCGCACCCTCTCTGATTACAACATCCAGAAAGAGTCAACCCTGCACCTGGTCCTCCGTCTGAG
GGGTGGCATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCC
AGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGACCAGC
AGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGATTACAACATCCA
GAAGGAGTCAACCCTGCACCTGGTCCTTCGCCTGAGAGGTGGCATGCAGATCTTCGTGAAGACC
CTGACCGGCAAGACCATCACCTTGGAGGTGGAGCCCAGTGACACCATCGAGAATGTGAAGGCCA
AGATCCAGGATAAAGAGGGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCT
AGAAGATGGCCGCACTCTCTCTGATTACAACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTC
CGTCTGAGGGGTGGCTATTAATTATTCGGTCTGCATTCCCAGTGGGCAGTGATGGCATTACTCT
GCACTCTAGCCACTTGCCCCAATTTAAGTTTAGAAATTACAAGTTTCAATAATAGCTGAACCTC
TGTTAAAAAATGTTAATAAAGGTTTTGTTGCATGGTAAGCATAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_011664 ⟹ NP_035794

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	11	62,441,997 - 62,444,039 (+)	NCBI
GRCm38	11	62,551,171 - 62,553,213 (+)	NCBI
MGSCv37	11	62,365,006 - 62,366,714 (+)	RGD
Celera	11	69,470,925 - 69,472,633 (+)	RGD
cM Map	11		ENTREZGENE

Sequence:

show sequence

CTTTGACTCCTCACCAATCAGCGCTGGCGCCGCAAGGAGGTTTCCAGAGCTTTCGAGGGAGGGC
CCTTTAACTTGGATTCATCCGCGTGATGATTTTTTCAATTTTTTGCACGAGAGGAGACGAGACG
CCGGGAATACAGTGTCTCTCGTTTGGTAGTACTCTTTTCTTTGGTTCTGAAGAATCGGGAGCTC
GGCAAAAACGCCTAATTGGTCTGGGGGAGGTGGGGGCCCGCGGAACTACTTTCGGTGGCGCAGG
AAGACAACAGCTACGTAGGAGTGAGCAGTCACGCAACAGACGCTGCATAAATAGCGGCTCGCGC
GGCCACTGAGCTCAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTGTGAGGGTGTTTCG
ACGCGCTGGGCGGTTTGTGCTTTCATCACATTTGTTAACAGGTCAAAATGCAGATCTTCGTGAA
GACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAGCCCAGTGACACCATCGAGAACGTGAAG
GCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCCGGCAAGC
AGCTGGAAGATGGCCGCACCCTCTCTGATTACAACATCCAGAAGGAGTCAACCCTGCACCTGGT
CCTTCGCCTGAGAGGTGGCATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTG
GAGGTGGAGCCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCC
CCCCTGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGA
TTACAACATCCAGAAAGAGTCAACCCTGCACCTGGTCCTCCGTCTGAGGGGTGGCATGCAGATC
TTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGA
ACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGC
CGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGATTACAACATCCAGAAGGAGTCAACCCTG
CACCTGGTCCTTCGCCTGAGAGGTGGCATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCA
TCACCTTGGAGGTGGAGCCCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGA
GGGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACT
CTCTCTGATTACAACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTCCGTCTGAGGGGTGGCT
ATTAATTATTCGGTCTGCATTCCCAGTGGGCAGTGATGGCATTACTCTGCACTCTAGCCACTTG
CCCCAATTTAAGTTTAGAAATTACAAGTTTCAATAATAGCTGAACCTCTGTTAAAAAATGTTAA
TAAAGGTTTTGTTGCATGGTAAGCATAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001300913	(Get FASTA)	NCBI Sequence Viewer
	NP_035794	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH19850	(Get FASTA)	NCBI Sequence Viewer
	AAI00342	(Get FASTA)	NCBI Sequence Viewer
	BAB22630	(Get FASTA)	NCBI Sequence Viewer
	BAB24930	(Get FASTA)	NCBI Sequence Viewer
	BAB26919	(Get FASTA)	NCBI Sequence Viewer
	BAB27071	(Get FASTA)	NCBI Sequence Viewer
	BAB28242	(Get FASTA)	NCBI Sequence Viewer
	BAB28606	(Get FASTA)	NCBI Sequence Viewer
	BAB29028	(Get FASTA)	NCBI Sequence Viewer
	BAE21330	(Get FASTA)	NCBI Sequence Viewer
	CAA35999	(Get FASTA)	NCBI Sequence Viewer
	EDL10351	(Get FASTA)	NCBI Sequence Viewer
	EDL10352	(Get FASTA)	NCBI Sequence Viewer
	P0CG49	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_035794 ⟸ NM_011664

- UniProtKB:

P0CG49 (UniProtKB/Swiss-Prot), Q78XY9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE
STLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ
QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGY

hide sequence

RefSeq Acc Id:

NP_001300913 ⟸ NM_001313984

- UniProtKB:

P0CG49 (UniProtKB/Swiss-Prot), Q78XY9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE
STLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ
QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGY

hide sequence

RefSeq Acc Id:

ENSMUSP00000019649 ⟸ ENSMUST00000019649

RefSeq Acc Id:

ENSMUSP00000117361 ⟸ ENSMUST00000136938

Protein Domains

Ubiquitin-like

Promoters

RGD ID:

6822442

Promoter ID:

MM_KWN:7828

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

ENSMUST00000108707, OTTMUST00000013034, OTTMUST00000013036, OTTMUST00000013048

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	11	62,363,471 - 62,365,522 (+)	MPROMDB

RGD ID:

8674980

Promoter ID:

EPDNEW_M15520

Type:

multiple initiation site

Name:

Ubb_1

Description:

Mus musculus ubiquitin B , transcript variant 2, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M15521

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	11	62,551,503 - 62,551,563	EPDNEW

RGD ID:

8674982

Promoter ID:

EPDNEW_M15521

Type:

initiation region

Name:

Ubb_2

Description:

Mus musculus ubiquitin B , transcript variant 2, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M15520

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	11	62,551,789 - 62,551,849	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:98888	AgrOrtholog
Ensembl Genes	ENSMUSG00000019505	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSMUSP00000019649	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUSP00000117361	UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000019649	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUST00000136938	UniProtKB/TrEMBL
InterPro	Ubiquitin	UniProtKB/Swiss-Prot
	Ubiquitin-like_dom	UniProtKB/TrEMBL
	Ubiquitin-like_domsf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ubiquitin_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ubiquitin_dom	UniProtKB/Swiss-Prot
	Ubiquitin_dom	UniProtKB/TrEMBL
KEGG Report	mmu:22187	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD	MGI:98888	ENTREZGENE
NCBI Gene	22187	ENTREZGENE
Pfam	ubiquitin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Ubb	PhenoGen
PRINTS	UBIQUITIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	UBIQUITIN_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	UBIQUITIN_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	UBQ	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF54236	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	P0CG49	ENTREZGENE
	Q5SX22_MOUSE	UniProtKB/TrEMBL
	Q78XY9	ENTREZGENE, UniProtKB/TrEMBL
	UBB_MOUSE	UniProtKB/Swiss-Prot
UniProt Secondary	P02248	UniProtKB/Swiss-Prot
	P02249	UniProtKB/Swiss-Prot
	P02250	UniProtKB/Swiss-Prot
	P62991	UniProtKB/Swiss-Prot
	Q29120	UniProtKB/Swiss-Prot
	Q62317	UniProtKB/Swiss-Prot
	Q64223	UniProtKB/Swiss-Prot
	Q8VCH1	UniProtKB/Swiss-Prot
	Q91887	UniProtKB/Swiss-Prot
	Q91888	UniProtKB/Swiss-Prot
	Q9CXY4	UniProtKB/Swiss-Prot
	Q9CZM0	UniProtKB/Swiss-Prot
	Q9D1R5	UniProtKB/Swiss-Prot
	Q9D8D9	UniProtKB/Swiss-Prot
	Q9ET23	UniProtKB/Swiss-Prot
	Q9ET24	UniProtKB/Swiss-Prot
	Q9Z0H9	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Annotations - KEGG (archival)