Pou5f1 (POU domain, class 5, transcription factor 1) - Rat Genome Database

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Gene: Pou5f1 (POU domain, class 5, transcription factor 1) Mus musculus
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Symbol: Pou5f1
Name: POU domain, class 5, transcription factor 1
RGD ID: 1552733
MGI Page MGI
Description: Exhibits several functions, including DNA binding activity; DNA-binding transcription activator activity, RNA polymerase II-specific; and ubiquitin protein ligase binding activity. Involved in several processes, including cell fate commitment involved in formation of primary germ layer; regulation of gene expression; and regulation of protein kinase B signaling. Localizes to several cellular components, including chromatin; nuclear lumen; and transcription repressor complex. Is expressed in several structures, including alimentary system; central nervous system; early conceptus; gonad; and mesoderm. Human ortholog(s) of this gene implicated in embryonal carcinoma and seminoma. Orthologous to several human genes including POU5F1 (POU class 5 homeobox 1).
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: NF-A3; Oct; Oct-; Oct-3; Oct-3/; Oct-3/4; Oct-4; Oct3; Oct3/; Oct3/4; Oct4; octamer-binding protein 3; octamer-binding protein 4; octamer-binding transcription factor 3; octamer-binding transcription factor 4 alternative; Otf; Otf-; Otf-3; Otf-4; Otf3; Otf3-; Otf3-rs7; Otf3g; Otf4; POU domain class 5 transcription factor 1 transcript variant 2 oct4b'; POU domain class 5 transcription factor 1 transcript variant 3 oct4b
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm18926   Gm2071   Gm21054   Pou5f1-rs1   Pou5f1-rs11   Pou5f1-rs12   Pou5f1-rs13   Pou5f1-rs2   Pou5f1-rs4   Pou5f1-rs6   Pou5f1-rs8   Pou5f1-rs9  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391735,816,929 - 35,821,674 (+)NCBIGRCm39mm39
GRCm39 Ensembl1735,816,915 - 35,821,669 (+)Ensembl
GRCm381735,506,032 - 35,510,777 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,506,018 - 35,510,772 (+)EnsemblGRCm38mm10GRCm38
MGSCv371735,642,984 - 35,647,722 (+)NCBIGRCm37mm9NCBIm37
MGSCv361735,114,104 - 35,118,822 (+)NCBImm8
Celera1739,020,984 - 39,025,724 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.69NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(20S)-ginsenoside Rg3  (ISO)
(S)-nicotine  (EXP,ISO)
1,7-phenanthroline  (EXP)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-methoxy-17beta-estradiol  (EXP)
3,5,6-trichloro-2-pyridinol  (EXP)
3,5,6-trichloropyridine-2-one  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methyladenine  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-nonylphenol  (EXP)
4-tert-Octylphenol  (EXP)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (EXP,ISO)
6-bromoindirubin-3'-oxime  (EXP)
acetic acid  (EXP)
afatinib  (ISO)
all-trans-retinoic acid  (EXP,ISO)
apigenin  (ISO)
aristolochic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (EXP,ISO)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
bromochloroacetic acid  (EXP)
bucladesine  (ISO)
butanal  (ISO)
cadmium dichloride  (ISO)
cannabidiol  (ISO)
carbaryl  (ISO)
carbon nanotube  (ISO)
casticin  (ISO)
CHIR 99021  (ISO)
chlordecone  (EXP,ISO)
chlorpromazine  (ISO)
chlorpyrifos  (EXP)
chromium(6+)  (EXP)
ciprofloxacin  (ISO)
cisplatin  (ISO)
clofibrate  (EXP)
cobalt atom  (ISO)
cobalt dichloride  (ISO)
curcumin  (EXP)
cycloheximide  (ISO)
cypermethrin  (EXP)
DDT  (ISO)
decabromodiphenyl ether  (ISO)
deoxycholic acid  (EXP)
dexamethasone  (EXP,ISO)
diarsenic trioxide  (EXP,ISO)
dibutyl phthalate  (ISO)
dieldrin  (ISO)
diethyl maleate  (ISO)
dimethyl sulfoxide  (ISO)
dioxygen  (EXP,ISO)
entinostat  (ISO)
ethanol  (ISO)
eugenol  (EXP,ISO)
fluoxetine  (EXP)
fulvestrant  (ISO)
genistein  (EXP)
glycerol 2-phosphate  (EXP)
GW 3965  (ISO)
GW 4064  (ISO)
heptachlor  (ISO)
hexachlorophene  (ISO)
hydrogen peroxide  (ISO)
ibuprofen  (ISO)
indinavir  (EXP)
indometacin  (ISO)
ivermectin  (ISO)
kaempferol  (EXP,ISO)
ketoconazole  (EXP)
L-ascorbic acid  (EXP,ISO)
lamivudine  (EXP)
lead diacetate  (EXP)
lead(0)  (ISO)
lead(2+)  (ISO)
leflunomide  (ISO)
lithium chloride  (ISO)
lupeol  (EXP)
LY294002  (EXP)
melatonin  (ISO)
metformin  (ISO)
methamphetamine  (ISO)
methylmercury chloride  (ISO)
methylparaben  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N-acetyl-L-cysteine  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-nitrosodiethylamine  (EXP)
nickel dichloride  (ISO)
niclosamide  (ISO)
nicotine  (EXP,ISO)
nocodazole  (ISO)
Nonylphenol  (EXP)
p-tert-Amylphenol  (EXP)
paclitaxel  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
phenanthrene  (EXP)
phenol red  (ISO)
piperonyl butoxide  (EXP)
poly(I:C)  (ISO)
progesterone  (ISO)
quercetin  (ISO)
quinpirole  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
saquinavir  (EXP)
SB 431542  (ISO)
silicon dioxide  (ISO)
sirolimus  (EXP)
sodium arsenite  (EXP,ISO)
SR9243  (ISO)
SU6656  (ISO)
tamoxifen  (ISO)
Tanshinone I  (EXP,ISO)
taurocholic acid  (EXP)
tetrachloromethane  (EXP)
thymoquinone  (ISO)
titanium dioxide  (EXP)
trichloroethene  (ISO)
trichostatin A  (ISO)
triclosan  (EXP)
triptonide  (EXP)
tris(2-butoxyethyl) phosphate  (ISO)
tubocurarine  (EXP)
valproic acid  (EXP,ISO)
zidovudine  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
blastocyst development  (IEP)
blastocyst growth  (IGI)
BMP signaling pathway involved in heart induction  (ISO)
cardiac cell fate determination  (ISO)
cell fate commitment  (IMP)
cell fate commitment involved in formation of primary germ layer  (ISO)
cellular response to leukemia inhibitory factor  (IEP)
ectodermal cell fate commitment  (IDA)
endodermal cell fate commitment  (IDA)
endodermal cell fate specification  (ISO)
germ-line stem cell population maintenance  (IMP)
mesodermal cell fate commitment  (IDA)
negative regulation of calcium ion-dependent exocytosis  (IDA)
negative regulation of cell differentiation  (IGI)
negative regulation of gene expression  (IDA)
negative regulation of gene silencing by miRNA  (ISO)
negative regulation of pri-miRNA transcription by RNA polymerase II  (ISO)
negative regulation of protein kinase B signaling  (IMP)
negative regulation of transcription by RNA polymerase II  (IGI,ISO)
negative regulation of transcription, DNA-templated  (IDA)
positive regulation of canonical Wnt signaling pathway  (ISO)
positive regulation of gene expression  (IDA)
positive regulation of protein kinase B signaling  (IMP)
positive regulation of SMAD protein signal transduction  (ISO)
positive regulation of transcription by RNA polymerase II  (IDA,IGI,IMP,ISO)
positive regulation of transcription initiation from RNA polymerase II promoter  (IDA)
positive regulation of transcription, DNA-templated  (IDA,IMP)
regulation of asymmetric cell division  (IEP)
regulation of DNA methylation-dependent heterochromatin assembly  (ISO)
regulation of gene expression  (ISO)
regulation of heart induction by regulation of canonical Wnt signaling pathway  (ISO)
regulation of transcription by RNA polymerase II  (IBA,IDA)
regulation of transcription, DNA-templated  (IDA,ISO)
response to cytokine  (ISO)
response to organic substance  (IDA)
response to retinoic acid  (IDA)
response to wounding  (ISO)
somatic stem cell population maintenance  (ISO)
stem cell differentiation  (IDA,IMP)
stem cell population maintenance  (IMP)
transcription by RNA polymerase II  (IDA)
trophectodermal cell differentiation  (IGI)

Cellular Component
chromatin  (IDA)
cytoplasm  (IDA,IMP,ISO)
cytosol  (ISO)
mitochondrion  (ISO)
nucleolus  (IDA)
nucleoplasm  (IDA,ISO)
nucleus  (IC,IDA,IMP,ISO)
transcription regulator complex  (IDA,ISO)
transcription repressor complex  (IDA)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:1408763   PMID:1676977   PMID:1680810   PMID:1690859   PMID:1768618   PMID:1915274   PMID:1967980   PMID:1972777   PMID:2357966   PMID:7590241   PMID:7749235   PMID:7782091  
PMID:7823919   PMID:7945330   PMID:7958450   PMID:7969117   PMID:8075642   PMID:8097478   PMID:8152920   PMID:8183905   PMID:8289793   PMID:8565852   PMID:8900043   PMID:8960364  
PMID:9140067   PMID:9171368   PMID:9389666   PMID:9507072   PMID:9524569   PMID:9529255   PMID:9649510   PMID:9790191   PMID:9814708   PMID:9835353   PMID:9851853   PMID:9988212  
PMID:9989404   PMID:10079228   PMID:10199551   PMID:10349636   PMID:10431240   PMID:10662781   PMID:10707901   PMID:10727854   PMID:10742100   PMID:10888606   PMID:10922068   PMID:10951505  
PMID:11042159   PMID:11076765   PMID:11076861   PMID:11090438   PMID:11099378   PMID:11170265   PMID:11203703   PMID:11217851   PMID:11309664   PMID:11404080   PMID:11412024   PMID:11418863  
PMID:11550273   PMID:11641723   PMID:11702949   PMID:11804789   PMID:11839785   PMID:11839818   PMID:11865068   PMID:11969257   PMID:12015293   PMID:12023300   PMID:12029086   PMID:12110668  
PMID:12128228   PMID:12351174   PMID:12351185   PMID:12381664   PMID:12381721   PMID:12447384   PMID:12466296   PMID:12466851   PMID:12477932   PMID:12514105   PMID:12581525   PMID:12606378  
PMID:12606408   PMID:12615074   PMID:12620989   PMID:12620990   PMID:12641567   PMID:12665572   PMID:12702663   PMID:12732652   PMID:12748966   PMID:12787504   PMID:12787505   PMID:12816048  
PMID:12858338   PMID:12888219   PMID:12889070   PMID:12915303   PMID:12923055   PMID:12972599   PMID:14502223   PMID:14502573   PMID:14511480   PMID:14511481   PMID:14516695   PMID:14528307  
PMID:14550793   PMID:14595844   PMID:14610273   PMID:14623228   PMID:14623818   PMID:14633973   PMID:14634211   PMID:14648878   PMID:14684992   PMID:14761651   PMID:14761969   PMID:14990861  
PMID:15003627   PMID:15039943   PMID:15047715   PMID:15063178   PMID:15084457   PMID:15108323   PMID:15142971   PMID:15161093   PMID:15162515   PMID:15183310   PMID:15199142   PMID:15215210  
PMID:15218026   PMID:15262984   PMID:15326356   PMID:15465492   PMID:15486564   PMID:15489334   PMID:15507119   PMID:15525667   PMID:15548425   PMID:15557334   PMID:15580630   PMID:15618518  
PMID:15685634   PMID:15788452   PMID:15829518   PMID:15831456   PMID:15836771   PMID:15860457   PMID:15863505   PMID:15882627   PMID:15893302   PMID:15893969   PMID:15917470   PMID:15923625  
PMID:15937924   PMID:15955835   PMID:15977177   PMID:15978570   PMID:15988017   PMID:15988037   PMID:15996113   PMID:16127703   PMID:16141072   PMID:16141073   PMID:16166252   PMID:16291796  
PMID:16310179   PMID:16325481   PMID:16325584   PMID:16326387   PMID:16328007   PMID:16354795   PMID:16397896   PMID:16415856   PMID:16425238   PMID:16433621   PMID:16434236   PMID:16452715  
PMID:16456133   PMID:16481355   PMID:16496425   PMID:16510872   PMID:16518401   PMID:16582099   PMID:16602821   PMID:16611995   PMID:16631596   PMID:16678776   PMID:16690745   PMID:16728477  
PMID:16767105   PMID:16772384   PMID:16787967   PMID:16790473   PMID:16793732   PMID:16815997   PMID:16822657   PMID:16847348   PMID:16872451   PMID:16887818   PMID:16887830   PMID:16908015  
PMID:16914746   PMID:16932739   PMID:16950240   PMID:16954384   PMID:16984773   PMID:16990585   PMID:16997917   PMID:17060609   PMID:17093407   PMID:17097055   PMID:17113034   PMID:17138661  
PMID:17183653   PMID:17187077   PMID:17194449   PMID:17242206   PMID:17277314   PMID:17280643   PMID:17287250   PMID:17360691   PMID:17369397   PMID:17418408   PMID:17418524   PMID:17452023  
PMID:17486547   PMID:17496161   PMID:17504919   PMID:17507372   PMID:17525163   PMID:17541407   PMID:17553482   PMID:17554336   PMID:17567914   PMID:17567962   PMID:17610371   PMID:17616727  
PMID:17634284   PMID:17669361   PMID:17676645   PMID:17676999   PMID:17683469   PMID:17699604   PMID:17715177   PMID:17724450   PMID:17882221   PMID:17913785   PMID:17913791   PMID:17928434  
PMID:17932422   PMID:17936260   PMID:17938196   PMID:17938240   PMID:17950287   PMID:17967808   PMID:17991485   PMID:18028899   PMID:18061570   PMID:18063756   PMID:18073198   PMID:18083014  
PMID:18096721   PMID:18159219   PMID:18191611   PMID:18199879   PMID:18200042   PMID:18201968   PMID:18213575   PMID:18250098   PMID:18283123   PMID:18287559   PMID:18339675   PMID:18366076  
PMID:18371336   PMID:18371436   PMID:18391523   PMID:18395706   PMID:18400104   PMID:18423437   PMID:18425773   PMID:18436203   PMID:18448678   PMID:18453147   PMID:18454139   PMID:18467660  
PMID:18471437   PMID:18478268   PMID:18505827   PMID:18522731   PMID:18539113   PMID:18559478   PMID:18575582   PMID:18617531   PMID:18622394   PMID:18653541   PMID:18662995   PMID:18682553  
PMID:18687992   PMID:18692038   PMID:18710938   PMID:18719224   PMID:18724799   PMID:18755297   PMID:18765667   PMID:18781635   PMID:18784354   PMID:18794365   PMID:18799693   PMID:18802003  
PMID:18804437   PMID:18806776   PMID:18814855   PMID:18816845   PMID:18837968   PMID:18927154   PMID:18932201   PMID:18957414   PMID:18983970   PMID:19014927   PMID:19020301   PMID:19022741  
PMID:19043588   PMID:19066578   PMID:19087264   PMID:19098141   PMID:19100252   PMID:19116663   PMID:19117947   PMID:19136965   PMID:19139101   PMID:19147497   PMID:19153222   PMID:19171782  
PMID:19174539   PMID:19190342   PMID:19191225   PMID:19211811   PMID:19221599   PMID:19228964   PMID:19301398   PMID:19321862   PMID:19334288   PMID:19403798   PMID:19416912   PMID:19429785  
PMID:19480014   PMID:19528230   PMID:19536068   PMID:19536159   PMID:19538736   PMID:19544422   PMID:19549635   PMID:19641521   PMID:19664601   PMID:19688838   PMID:19695304   PMID:19696014  
PMID:19700764   PMID:19701907   PMID:19703589   PMID:19710168   PMID:19740739   PMID:19753101   PMID:19757380   PMID:19763260   PMID:19777066   PMID:19784378   PMID:19796622   PMID:19816951  
PMID:19818747   PMID:19821493   PMID:19849841   PMID:19861488   PMID:19864318   PMID:19876815   PMID:19877283   PMID:19884257   PMID:19898466   PMID:19915186   PMID:19931425   PMID:19933217  
PMID:19955426   PMID:19968627   PMID:20007774   PMID:20010832   PMID:20014105   PMID:20018908   PMID:20026622   PMID:20059948   PMID:20059953   PMID:20080709   PMID:20081188   PMID:20089898  
PMID:20096661   PMID:20103622   PMID:20106871   PMID:20123909   PMID:20174582   PMID:20219939   PMID:20300987   PMID:20335479   PMID:20336070   PMID:20346354   PMID:20362541   PMID:20362542  
PMID:20376339   PMID:20380832   PMID:20404087   PMID:20412747   PMID:20412781   PMID:20435031   PMID:20439489   PMID:20439621   PMID:20479880   PMID:20484740   PMID:20485553   PMID:20506506  
PMID:20508149   PMID:20510672   PMID:20548051   PMID:20572009   PMID:20573697   PMID:20573702   PMID:20629982   PMID:20637190   PMID:20646110   PMID:20697379   PMID:20707993   PMID:20708584  
PMID:20720167   PMID:20720539   PMID:20727175   PMID:20736371   PMID:20739663   PMID:20826531   PMID:20833365   PMID:20856864   PMID:20857206   PMID:20858271   PMID:20876279   PMID:20876643  
PMID:20943815   PMID:20969841   PMID:21048921   PMID:21073982   PMID:21076177   PMID:21083502   PMID:21115610   PMID:21131959   PMID:21135096   PMID:21136379   PMID:21159818   PMID:21163256  
PMID:21185279   PMID:21235343   PMID:21245162   PMID:21258368   PMID:21285944   PMID:21295276   PMID:21295277   PMID:21311564   PMID:21337463   PMID:21348597   PMID:21360626   PMID:21385577  
PMID:21425413   PMID:21425417   PMID:21445260   PMID:21458673   PMID:21474102   PMID:21477851   PMID:21497086   PMID:21502535   PMID:21504946   PMID:21559298   PMID:21569470   PMID:21576353  
PMID:21589869   PMID:21608077   PMID:21609209   PMID:21617704   PMID:21651572   PMID:21654156   PMID:21660050   PMID:21663792   PMID:21674058   PMID:21731500   PMID:21731673   PMID:21803296  
PMID:21804635   PMID:21806820   PMID:21840941   PMID:21873635   PMID:21887724   PMID:21896659   PMID:21900680   PMID:21953618   PMID:21962512   PMID:21986498   PMID:21991325   PMID:22020437  
PMID:22036565   PMID:22037576   PMID:22083510   PMID:22084091   PMID:22120493   PMID:22121118   PMID:22159899   PMID:22164208   PMID:22167068   PMID:22206758   PMID:22223620   PMID:22232554  
PMID:22262692   PMID:22281008   PMID:22287043   PMID:22327294   PMID:22333836   PMID:22344693   PMID:22355722   PMID:22419569   PMID:22424930   PMID:22447323   PMID:22504302   PMID:22529382  
PMID:22539002   PMID:22573614   PMID:22589736   PMID:22608532   PMID:22669107   PMID:22669820   PMID:22683460   PMID:22698281   PMID:22704655   PMID:22730289   PMID:22739622   PMID:22745796  
PMID:22761414   PMID:22770845   PMID:22795133   PMID:22807480   PMID:22821840   PMID:22832160   PMID:22909387   PMID:22939930   PMID:22942124   PMID:22948941   PMID:22948967   PMID:22960235  
PMID:22969005   PMID:22972715   PMID:22980982   PMID:22982455   PMID:22992956   PMID:23022299   PMID:23034635   PMID:23041284   PMID:23077180   PMID:23097321   PMID:23102580   PMID:23102581  
PMID:23108051   PMID:23142660   PMID:23154415   PMID:23154982   PMID:23213213   PMID:23254757   PMID:23255053   PMID:23269686   PMID:23295861   PMID:23300479   PMID:23307555   PMID:23313770  
PMID:23350932   PMID:23376973   PMID:23386720   PMID:23395962   PMID:23417407   PMID:23417899   PMID:23437007   PMID:23444350   PMID:23451132   PMID:23463509   PMID:23468641   PMID:23468991  
PMID:23469192   PMID:23470161   PMID:23473982   PMID:23474895   PMID:23486062   PMID:23486912   PMID:23487311   PMID:23487795   PMID:23495099   PMID:23497137   PMID:23508100   PMID:23521771  
PMID:23550731   PMID:23553930   PMID:23554223   PMID:23580657   PMID:23582324   PMID:23585350   PMID:23616593   PMID:23629142   PMID:23651855   PMID:23670199   PMID:23671187   PMID:23696815  
PMID:23708003   PMID:23728800   PMID:23729591   PMID:23743205   PMID:23747191   PMID:23748610   PMID:23760955   PMID:23762465   PMID:23788624   PMID:23791728   PMID:23798425   PMID:23824537  
PMID:23825703   PMID:23842495   PMID:23903192   PMID:23934214   PMID:23963638   PMID:24009519   PMID:24036311   PMID:24059348   PMID:24067652   PMID:24083387   PMID:24104477   PMID:24113379  
PMID:24121003   PMID:24131634   PMID:24168030   PMID:24183668   PMID:24210613   PMID:24244203   PMID:24268575   PMID:24315442   PMID:24324735   PMID:24335282   PMID:24357321   PMID:24448552  
PMID:24504341   PMID:24550733   PMID:24561253   PMID:24598112   PMID:24607542   PMID:24630727   PMID:24632399   PMID:24670652   PMID:24672757   PMID:24835466   PMID:24836291   PMID:24850856  
PMID:24859004   PMID:24899573   PMID:24905168   PMID:24931607   PMID:24952961   PMID:24956260   PMID:24960041   PMID:25043178   PMID:25142465   PMID:25158167   PMID:25185564   PMID:25224227  
PMID:25226357   PMID:25238487   PMID:25263278   PMID:25324523   PMID:25331067   PMID:25335925   PMID:25340657   PMID:25344072   PMID:25397698   PMID:25446535   PMID:25457166   PMID:25467916  
PMID:25480920   PMID:25501223   PMID:25509123   PMID:25516968   PMID:25569105   PMID:25569111   PMID:25605784   PMID:25668066   PMID:25684227   PMID:25727014   PMID:25739037   PMID:25739401  
PMID:25748933   PMID:25754111   PMID:25761595   PMID:25772451   PMID:25805847   PMID:25810472   PMID:25824710   PMID:25851587   PMID:25857206   PMID:25901318   PMID:25940188   PMID:25992972  
PMID:26116663   PMID:26120033   PMID:26142281   PMID:26224005   PMID:26260289   PMID:26265072   PMID:26267271   PMID:26288816   PMID:26303070   PMID:26307407   PMID:26314899   PMID:26411691  
PMID:26416966   PMID:26435056   PMID:26445504   PMID:26453549   PMID:26511926   PMID:26523946   PMID:26534985   PMID:26551560   PMID:26589352   PMID:26615201   PMID:26641717   PMID:26642061  
PMID:26658019   PMID:26691508   PMID:26704423   PMID:26742488   PMID:26785054   PMID:26804242   PMID:26832419   PMID:26877091   PMID:26880562   PMID:26902285   PMID:26921005   PMID:26934381  
PMID:26947975   PMID:27026076   PMID:27084449   PMID:27146218   PMID:27148974   PMID:27179789   PMID:27183216   PMID:27199373   PMID:27217206   PMID:27226536   PMID:27246714   PMID:27256596  
PMID:27292645   PMID:27300003   PMID:27302093   PMID:27341307   PMID:27346346   PMID:27402951   PMID:27453501   PMID:27486267   PMID:27499297   PMID:27521049   PMID:27579714   PMID:27583450  
PMID:27586544   PMID:27609454   PMID:27618282   PMID:27622636   PMID:27649575   PMID:27732856   PMID:27760115   PMID:27773674   PMID:27788132   PMID:27790870   PMID:27866876   PMID:27984042  
PMID:28052023   PMID:28082412   PMID:28087629   PMID:28107452   PMID:28111200   PMID:28115466   PMID:28118982   PMID:28128212   PMID:28157483   PMID:28253866   PMID:28254784   PMID:28287392  
PMID:28298438   PMID:28322735   PMID:28373172   PMID:28401892   PMID:28429718   PMID:28436127   PMID:28531375   PMID:28548937   PMID:28552559   PMID:28619992   PMID:28648365   PMID:28682643  
PMID:28684628   PMID:28711491   PMID:28731785   PMID:28733998   PMID:28760667   PMID:28794128   PMID:28833847   PMID:28839193   PMID:28870993   PMID:28963472   PMID:28982686   PMID:28988986  
PMID:29044103   PMID:29107559   PMID:29138408   PMID:29153991   PMID:29168693   PMID:29180818   PMID:29216265   PMID:29249356   PMID:29266259   PMID:29307582   PMID:29320730   PMID:29324782  
PMID:29335068   PMID:29358044   PMID:29380422   PMID:29412136   PMID:29412738   PMID:29467473   PMID:29501710   PMID:29514090   PMID:29526734   PMID:29530881   PMID:29572359   PMID:29735715  
PMID:29742392   PMID:29884675   PMID:29901724   PMID:29915126   PMID:29933066   PMID:29941866   PMID:30013107   PMID:30017590   PMID:30026265   PMID:30040984   PMID:30089261   PMID:30108053  
PMID:30110177   PMID:30111536   PMID:30134160   PMID:30140294   PMID:30209362   PMID:30256721   PMID:30269953   PMID:30382588   PMID:30390611   PMID:30420655   PMID:30456378   PMID:30529251  
PMID:30532006   PMID:30552867   PMID:30569122   PMID:30653498   PMID:30702937   PMID:30790630   PMID:30801858   PMID:30814500   PMID:30842444   PMID:30842446   PMID:30850578   PMID:30943410  
PMID:30954402   PMID:30981804   PMID:31077711   PMID:31100714   PMID:31222057   PMID:31260508   PMID:31276560   PMID:31277213   PMID:31279504   PMID:31315026   PMID:31315906   PMID:31356635  
PMID:31375664   PMID:31421080   PMID:31444221   PMID:31556488   PMID:31575647   PMID:31586065   PMID:31588228   PMID:31624145   PMID:31722212   PMID:31792383   PMID:31794640   PMID:31835801  
PMID:31843009   PMID:31935927   PMID:31937556   PMID:32035244   PMID:32075734   PMID:32198202   PMID:32231305   PMID:32251342   PMID:32294451   PMID:32296071   PMID:32376682   PMID:32487125  
PMID:32493987   PMID:32494737   PMID:32521258   PMID:32523119   PMID:32527007   PMID:32681107   PMID:32759216   PMID:32930837   PMID:32994224   PMID:33022126   PMID:33048843   PMID:33127892  
PMID:33181171   PMID:33246328   PMID:33452132   PMID:33810223  


Genomics

Comparative Map Data
Pou5f1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391735,816,929 - 35,821,674 (+)NCBIGRCm39mm39
GRCm39 Ensembl1735,816,915 - 35,821,669 (+)Ensembl
GRCm381735,506,032 - 35,510,777 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,506,018 - 35,510,772 (+)EnsemblGRCm38mm10GRCm38
MGSCv371735,642,984 - 35,647,722 (+)NCBIGRCm37mm9NCBIm37
MGSCv361735,114,104 - 35,118,822 (+)NCBImm8
Celera1739,020,984 - 39,025,724 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.69NCBI
POU5F1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl631,164,337 - 31,180,731 (-)EnsemblGRCh38hg38GRCh38
GRCh38631,164,337 - 31,170,682 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37631,132,114 - 31,138,459 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36631,240,093 - 31,246,430 (-)NCBINCBI36hg18NCBI36
Build 34631,240,107 - 31,242,024NCBI
Celera632,732,336 - 32,738,691 (-)NCBI
Cytogenetic Map6p21.33NCBI
HuRef630,934,532 - 30,940,887 (-)NCBIHuRef
CHM1_1631,134,214 - 31,140,551 (-)NCBICHM1_1
Pou5f1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2203,223,128 - 3,227,891 (-)NCBI
Rnor_6.0 Ensembl203,747,221 - 3,751,994 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0203,747,231 - 3,751,994 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0205,833,973 - 5,838,736 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera20650,325 - 655,095 (-)NCBICelera
Cytogenetic Map20p12NCBI
Pou5f1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955583995,707 - 1,003,202 (-)NCBIChiLan1.0ChiLan1.0
POU5F1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1631,775,343 - 31,781,426 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl631,775,343 - 31,781,426 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0630,910,421 - 30,916,465 (-)NCBIMhudiblu_PPA_v0panPan3
Pou5f1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494634,462,312 - 34,467,659 (-)NCBI
SpeTri2.0NW_004936837827,568 - 838,933 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POU5F1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1723,564,654 - 23,570,691 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2727,262,690 - 27,268,388 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap7p1.1NCBI
POU5F1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11741,306,523 - 41,313,065 (+)NCBI
Vero_WHO_p1.0NW_02366604430,855,264 - 30,861,857 (-)NCBI
Pou5f1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475424,758,055 - 24,764,723 (+)NCBI

Position Markers
Pou5f1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381735,509,123 - 35,509,444UniSTSGRCm38
MGSCv371161,224,000 - 161,224,248UniSTSGRCm37
MGSCv371735,647,397 - 35,647,645UniSTSGRCm37
MGSCv375104,868,452 - 104,869,376UniSTSGRCm37
MGSCv371735,646,449 - 35,647,503UniSTSGRCm37
MGSCv371735,646,451 - 35,647,560UniSTSGRCm37
MGSCv371735,647,295 - 35,647,471UniSTSGRCm37
MGSCv371735,643,237 - 35,643,376UniSTSGRCm37
MGSCv371735,642,974 - 35,643,365UniSTSGRCm37
MGSCv371735,646,367 - 35,647,001UniSTSGRCm37
MGSCv371735,647,059 - 35,647,335UniSTSGRCm37
Celera1739,024,070 - 39,024,391UniSTS
Cytogenetic Map17B1UniSTS
cM Map556.0UniSTS
cM Map1719.23UniSTS
cM Map1719.23UniSTS
Oct4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map17B1UniSTS
cM Map1719.23UniSTS
UniSTS:274185  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381159,293,869 - 159,294,118UniSTSGRCm38
GRCm381735,510,452 - 35,510,701UniSTSGRCm38
MGSCv371161,224,000 - 161,224,249UniSTSGRCm37
MGSCv371735,647,397 - 35,647,646UniSTSGRCm37
Celera1739,025,399 - 39,025,648UniSTS
Celera1161,694,425 - 161,694,674UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B1UniSTS
cM Map1719.23UniSTS
Pou5f1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map17B1UniSTS
Pou5f1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map17B1UniSTS
Pou5f1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381735,506,029 - 35,506,420UniSTSGRCm38
MGSCv371735,642,974 - 35,643,365UniSTSGRCm37
Celera1739,020,974 - 39,021,365UniSTS
Cytogenetic Map17B1UniSTS
cM Map1719.23UniSTS
Pou5f1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map17B1UniSTS
cM Map1719.23UniSTS
Spp1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map17B1UniSTS
cM Map556.0UniSTS
Pou5f1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381735,509,504 - 35,510,558UniSTSGRCm38
MGSCv371735,646,449 - 35,647,503UniSTSGRCm37
Celera1739,024,451 - 39,025,505UniSTS
Cytogenetic Map17B1UniSTS
Pou5f1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381735,509,422 - 35,510,056UniSTSGRCm38
MGSCv371735,646,367 - 35,647,001UniSTSGRCm37
Celera1739,024,369 - 39,025,003UniSTS
Cytogenetic Map17B1UniSTS
Pou5f1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map17B1UniSTS
Pou5f1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381735,510,114 - 35,510,390UniSTSGRCm38
MGSCv371735,647,059 - 35,647,335UniSTSGRCm37
Celera1739,025,061 - 39,025,337UniSTS
Cytogenetic Map17B1UniSTS
Pou5f1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map17B1UniSTS
Pou5f1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map17B1UniSTS
Pou5f1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381735,510,350 - 35,510,526UniSTSGRCm38
MGSCv371735,647,295 - 35,647,471UniSTSGRCm37
Celera1739,025,297 - 39,025,473UniSTS
Cytogenetic Map17B1UniSTS
Pou5f1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381735,506,292 - 35,506,431UniSTSGRCm38
MGSCv371735,643,237 - 35,643,376UniSTSGRCm37
Celera1739,021,237 - 39,021,376UniSTS
Cytogenetic Map17B1UniSTS
Pou5f1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map17B1UniSTS
Pou5f1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381735,509,506 - 35,510,615UniSTSGRCm38
MGSCv371735,646,451 - 35,647,560UniSTSGRCm37
Celera1739,024,453 - 39,025,562UniSTS
Cytogenetic Map17B1UniSTS
Pou5f1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map17B1UniSTS
Pou5f1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381735,510,452 - 35,510,700UniSTSGRCm38
GRCm381159,293,869 - 159,294,117UniSTSGRCm38
MGSCv371735,647,397 - 35,647,645UniSTSGRCm37
MGSCv371161,224,000 - 161,224,248UniSTSGRCm37
Celera1739,025,399 - 39,025,647UniSTS
Celera1161,694,425 - 161,694,673UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B1UniSTS
Pou5f1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map17B1UniSTS
Pou5f1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map17B1UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17312791337128037Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17392461548559063Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined480447745359340Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17480447746158776Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17480447747574740Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined480447765330362Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17667496240674962Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17836594042366175Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17836594042366175Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined17986241186688972Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171065914544659245Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1098759739053168Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1166699745667145Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171177921045779210Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171206732483054339Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171223281346232813Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171242798746427987Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171390439847904522Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171484267848842786Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171484267848842786Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171484267848842786Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171484267848842786Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171660074750600869Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171660074750600869Mouse
1301505Tir1_mtrypanosome infection response 1 (mouse)Not determined171660074750600869Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171681096950811104Mouse
1302042Acsns3_mAngiostrongylus costaricensis nematode susceptibility 3 (mouse)Not determined171724323451243371Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171724323451243371Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171724323451243371Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171724323451243371Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171724323451243371Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171795643651959238Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171819938152202007Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171820316552205351Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171883413352834133Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172430185958301973Mouse
10412198Sst5_msusceptibility to tuberculosis 5 (mouse)Not determined172485760955405969Mouse
10412196Bbaa28_mB.burgdorferi-associated arthritis 28 (mouse)Not determined172536594043665344Mouse
10412204Bbaa29_mB.burgdorferi-associated arthritis 29 (mouse)Not determined172574029459740461Mouse
1558758Kcal2_mkilocalorie 2 (mouse)Not determined172618203852604676Mouse
1300602Eye2_meye weight 2 (mouse)Not determined172628636340794146Mouse
1302005Loco2_mlocomotor activity 2 (mouse)Not determined172657408160574223Mouse
11075105Modc1_mmodifier of Odc1 (mouse)172749681845311728Mouse
15039348Nmrs37_mNAFLD-associated magnetic resonance shift 37 (mouse)172750432261504322Mouse
10045977Tir9_mtrypanosome infection response 9 (mouse)Not determined172765914543574223Mouse
1300703Uvbi2_mUVB induced immunosuppression 2 (mouse)Not determined172831148062311728Mouse
1300589Myaa2_mmodifier of Yaa 2 (mouse)Not determined172982162963821740Mouse
4140955Plgr1_mplague resistance locus 1 (mouse)Not determined3072257564722705Mouse
4141357Mrdq1_mmodifier of retinal degeneration QTL 1 (mouse)Not determined3076892947728778Mouse
1300692Blmpf1_mbleomycin-induced pulmonary fibrosis 1 (mouse)Not determined173184267837333884Mouse
26884379Skwq5_mskull length QTL 5, 5 week (mouse)173290000053800000Mouse
1302189Dps3_mdelta power in slow-wave sleep 3 (mouse)Not determined173360074735939288Mouse
1300885Mbis4_mMycobacterium bovis-induced systemic lupus erythematosus 4 (mouse)Not determined173495684169858931Mouse

miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Mir470mmu-miR-470-5pMirecordsexternal_info{changed}NA18806776

Predicted Target Of
Summary Value
Count of predictions:1161
Count of miRNA genes:292
Interacting mature miRNAs:319
Transcripts:ENSMUST00000025271, ENSMUST00000172651, ENSMUST00000173256, ENSMUST00000173805, ENSMUST00000173934, ENSMUST00000174207, ENSMUST00000174782
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001252452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_013633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB221654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB375269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB375270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB375271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB375272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB375273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB375274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB375275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB375276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB375277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB375278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC087216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH003761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW536651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC068268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY390845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ059769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR974473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU463831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU467494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM346526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC049958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M34381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MF509659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MF509660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MF509661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MF509662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MF509663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S68053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X52437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000025271   ⟹   ENSMUSP00000025271
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1735,506,018 - 35,510,772 (+)Ensembl
RefSeq Acc Id: ENSMUST00000172651   ⟹   ENSMUSP00000134654
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1735,508,805 - 35,510,134 (+)Ensembl
RefSeq Acc Id: ENSMUST00000173256   ⟹   ENSMUSP00000134060
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1735,508,817 - 35,510,134 (+)Ensembl
RefSeq Acc Id: ENSMUST00000173805   ⟹   ENSMUSP00000133633
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1735,508,807 - 35,510,134 (+)Ensembl
RefSeq Acc Id: ENSMUST00000173934   ⟹   ENSMUSP00000134729
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1735,507,482 - 35,510,134 (+)Ensembl
RefSeq Acc Id: ENSMUST00000174782   ⟹   ENSMUSP00000134493
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1735,508,821 - 35,510,134 (+)Ensembl
RefSeq Acc Id: NM_001252452   ⟹   NP_001239381
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391735,819,704 - 35,821,674 (+)NCBI
GRCm381735,508,807 - 35,510,777 (+)NCBI
Celera1739,020,977 - 39,025,724 (+)ENTREZGENE
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_013633   ⟹   NP_038661
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391735,816,929 - 35,821,674 (+)NCBI
GRCm381735,506,032 - 35,510,777 (+)ENTREZGENE
MGSCv371735,642,984 - 35,647,722 (+)RGD
Celera1739,020,977 - 39,025,724 (+)ENTREZGENE
cM Map17 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_038661   ⟸   NM_013633
- Peptide Label: isoform 1
- UniProtKB: P20263 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001239381   ⟸   NM_001252452
- Peptide Label: isoform 2
- Sequence:
RefSeq Acc Id: ENSMUSP00000134654   ⟸   ENSMUST00000172651
RefSeq Acc Id: ENSMUSP00000134493   ⟸   ENSMUST00000174782
RefSeq Acc Id: ENSMUSP00000134060   ⟸   ENSMUST00000173256
RefSeq Acc Id: ENSMUSP00000133633   ⟸   ENSMUST00000173805
RefSeq Acc Id: ENSMUSP00000134729   ⟸   ENSMUST00000173934
RefSeq Acc Id: ENSMUSP00000025271   ⟸   ENSMUST00000025271
Protein Domains
Homeobox   POU-specific

Promoters
RGD ID:13675882
Promoter ID:EPDNEW_M22090
Type:initiation region
Name:Pou5f1_1
Description:Mus musculus POU domain, class 5, transcription factor 1 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381735,506,060 - 35,506,120EPDNEW
RGD ID:6828491
Promoter ID:MM_KWN:23318
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:NM_013633
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361735,642,641 - 35,643,141 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:101893 AgrOrtholog
Ensembl Genes ENSMUSG00000024406 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000025271 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000133633 UniProtKB/TrEMBL
  ENSMUSP00000134060 UniProtKB/TrEMBL
  ENSMUSP00000134493 UniProtKB/TrEMBL
  ENSMUSP00000134654 UniProtKB/TrEMBL
  ENSMUSP00000134729 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000025271 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000172651 UniProtKB/TrEMBL
  ENSMUST00000173256 UniProtKB/TrEMBL
  ENSMUST00000173805 UniProtKB/TrEMBL
  ENSMUST00000173934 UniProtKB/TrEMBL
  ENSMUST00000174782 UniProtKB/TrEMBL
Gene3D-CATH 1.10.260.40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lambda_DNA-bd_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  POU UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  POU_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  POU_dom_5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:18999 UniProtKB/Swiss-Prot
MGD MGI:101893 ENTREZGENE
NCBI Gene 18999 ENTREZGENE
PANTHER PTHR11636:SF86 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Homeodomain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pou UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pou5f1 PhenoGen
PRINTS POUDOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE HOMEOBOX_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  POU_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  POU_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  POU_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  POU UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF47413 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A2I6EDI9_MOUSE UniProtKB/TrEMBL
  A0A2I6EDJ6_MOUSE UniProtKB/TrEMBL
  A0A2Z6DUK5_MOUSE UniProtKB/TrEMBL
  E2JL30_MOUSE UniProtKB/TrEMBL
  E2JL33_MOUSE UniProtKB/TrEMBL
  E2JL35_MOUSE UniProtKB/TrEMBL
  G3UZG9_MOUSE UniProtKB/TrEMBL
  P20263 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q63843 UniProtKB/Swiss-Prot