Gpc4 (glypican 4) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Gpc4 (glypican 4) Mus musculus
Analyze
Symbol: Gpc4
Name: glypican 4
RGD ID: 1552673
MGI Page MGI
Description: Involved in synaptic membrane adhesion. Located in extracellular matrix and extracellular space. Is active in glutamatergic synapse. Is expressed in several structures, including alimentary system; central nervous system; embryo ectoderm; limb; and sensory organ. Human ortholog(s) of this gene implicated in Keipert syndrome. Orthologous to human GPC4 (glypican 4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 9530073D23Rik; AF311610; AI385680; AI661372; glypican-4; K-gly; K-glypican
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X51,139,884 - 51,253,800 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX51,141,898 - 51,254,129 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38X52,051,007 - 52,164,923 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX52,053,021 - 52,165,252 (-)Ensemblmm10GRCm38
MGSCv37X49,406,195 - 49,518,100 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36X48,297,547 - 48,409,879 (-)NCBIMGSCv36mm8
CeleraX39,465,872 - 39,577,854 (-)NCBICelera
Cytogenetic MapXA5NCBI
cM MapX28.33NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1,1-dichloroethene  (EXP)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (EXP)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (EXP)
amitrole  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
Azoxymethane  (EXP)
benzo[a]pyrene  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
butanal  (ISO)
cadmium dichloride  (EXP)
cisplatin  (ISO)
clofibrate  (EXP)
crocidolite asbestos  (EXP)
cyclosporin A  (EXP,ISO)
dextran sulfate  (EXP)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
diquat  (EXP)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
endosulfan  (ISO)
ethanol  (EXP)
inulin  (EXP)
ivermectin  (ISO)
methapyrilene  (ISO)
methimazole  (ISO)
methylmercury chloride  (ISO)
N-methyl-N'-nitro-N-nitrosoguanidine  (EXP)
nickel atom  (ISO)
nickel sulfate  (ISO)
okadaic acid  (EXP,ISO)
panobinostat  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
phorbol 13-acetate 12-myristate  (EXP)
pirinixic acid  (EXP)
potassium dichromate  (EXP)
pregnenolone 16alpha-carbonitrile  (EXP,ISO)
Salinomycin  (ISO)
SB 431542  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (ISO)
sunitinib  (ISO)
T-2 toxin  (ISO)
temozolomide  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (ISO)
titanium dioxide  (EXP)
trichostatin A  (ISO)
troglitazone  (EXP)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Genetic analysis of testis weight and fertility in an interspecies hybrid congenic strain for Chromosome X. Elliott RW, etal., Mamm Genome 2001 Jan;12(1):45-51.
2. Localisation of specific heparan sulfate proteoglycans during the proliferative phase of brain development. Ford-Perriss M, etal., Dev Dyn 2003 Jun;227(2):170-84.
3. Glypican-4 is an FGF2-binding heparan sulfate proteoglycan expressed in neural precursor cells. Hagihara K, etal., Dev Dyn 2000 Nov;219(3):353-67.
4. Comparison of expression patterns between CREB family transcription factor OASIS and proteoglycan core protein genes during murine tooth development. Hikake T, etal., Anat Embryol (Berl) 2003 Apr;206(5):373-80. Epub 2003 Mar 21.
5. Hepatocyte growth factor-mediated renal epithelial branching morphogenesis is regulated by glypican-4 expression. Karihaloo A, etal., Mol Cell Biol 2004 Oct;24(19):8745-52.
6. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
7. Mechanical strain regulation of the chicken glypican-4 gene expression in the avian eggshell gland. Lavelin I, etal., Am J Physiol Regul Integr Comp Physiol 2002 Oct;283(4):R853-61.
8. Murine glypican-4 gene structure and expression; Sp1 and Sp3 play a major role in glypican-4 expression in 3T3-F442A cells. Li H, etal., Biochim Biophys Acta 2004 Aug 12;1679(2):141-55.
9. High-resolution quantitative trait locus mapping for body weight in mice by recombinant progeny testing. Liu X, etal., Genet Res 2001 Apr;77(2):191-7.
10. Mouse K-glypican gene, gpc4, maps to chromosome X. Matsuki Y, etal., Genomics 1998 Dec 1;54(2):358-9.
11. MGDs mouse GO annotations MGD data from the GO Consortium
12. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
13. Regulatory variation at glypican-3 underlies a major growth QTL in mice. Oliver F, etal., PLoS Biol 2005 May;3(5):e135. Epub 2005 Apr 5.
14. Mouse MP Annotation Import Pipeline RGD automated import pipeline
15. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
16. Expression of glypican-4 in haematopoietic-progenitor and bone-marrow-stromal cells. Siebertz B, etal., Biochem J 1999 Dec 15;344 Pt 3:937-43.
17. K-glypican: a novel GPI-anchored heparan sulfate proteoglycan that is highly expressed in developing brain and kidney. Watanabe K, etal., J Cell Biol 1995 Sep;130(5):1207-18.
18. Dally-like core protein and its mammalian homologues mediate stimulatory and inhibitory effects on Hedgehog signal response. Williams EH, etal., Proc Natl Acad Sci U S A. 2010 Mar 30;107(13):5869-74. Epub 2010 Mar 15.
19. Expression pattern of glypican-4 suggests multiple roles during mouse development. Ybot-Gonzalez P, etal., Dev Dyn 2005 Jul;233(3):1013-7.
Additional References at PubMed
PMID:7925270   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11544199   PMID:12466305   PMID:12477932   PMID:12520002   PMID:14610273   PMID:14691545   PMID:15489334   PMID:16141072  
PMID:16141073   PMID:16452087   PMID:17107664   PMID:18799693   PMID:19538736   PMID:19732411   PMID:19762422   PMID:20562862   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22722203  
PMID:22751693   PMID:22761013   PMID:23011808   PMID:23312518   PMID:23911103   PMID:24006456   PMID:24194600   PMID:25540130   PMID:25624497   PMID:26116392   PMID:26393505   PMID:26449520  
PMID:26776509   PMID:28071719   PMID:28190767   PMID:29024665   PMID:29636380   PMID:30598870   PMID:30982611   PMID:31146259   PMID:31484922   PMID:32201365   PMID:32220631   PMID:32325033  
PMID:34301723   PMID:34321999   PMID:34748756   PMID:35858542   PMID:36057966   PMID:37196079   PMID:37321444   PMID:37408198   PMID:38355793  


Genomics

Comparative Map Data
Gpc4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X51,139,884 - 51,253,800 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX51,141,898 - 51,254,129 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38X52,051,007 - 52,164,923 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX52,053,021 - 52,165,252 (-)Ensemblmm10GRCm38
MGSCv37X49,406,195 - 49,518,100 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36X48,297,547 - 48,409,879 (-)NCBIMGSCv36mm8
CeleraX39,465,872 - 39,577,854 (-)NCBICelera
Cytogenetic MapXA5NCBI
cM MapX28.33NCBI
GPC4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X133,300,103 - 133,415,489 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX133,300,103 - 133,416,214 (-)Ensemblhg38GRCh38
GRCh37X132,434,131 - 132,549,517 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X132,262,730 - 132,376,871 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34X132,160,583 - 132,274,725NCBI
CeleraX132,821,529 - 132,935,634 (-)NCBICelera
Cytogenetic MapXq26.2NCBI
HuRefX121,838,234 - 121,950,367 (-)NCBIHuRef
CHM1_1X132,346,513 - 132,460,631 (-)NCBICHM1_1
T2T-CHM13v2.0X131,624,867 - 131,740,250 (-)NCBIT2T-CHM13v2.0
Gpc4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X136,565,536 - 136,676,142 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX136,565,591 - 136,676,057 (-)EnsemblGRCr8
mRatBN7.2X131,644,711 - 131,755,349 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX131,644,704 - 131,755,284 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX133,806,780 - 133,916,420 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X137,388,731 - 137,498,370 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X134,957,297 - 135,066,936 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X139,354,325 - 139,464,876 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX139,354,155 - 139,464,798 (-)Ensemblrn6Rnor6.0
Rnor_5.0X139,402,208 - 139,512,761 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X138,966,579 - 139,077,074 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX130,559,646 - 130,670,213 (-)NCBICelera
RGSC_v3.1X139,040,011 - 139,150,507 (-)NCBI
Cytogenetic MapXq36NCBI
Gpc4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554731,546,326 - 1,655,822 (+)Ensembl
ChiLan1.0NW_0049554731,546,615 - 1,655,822 (+)NCBIChiLan1.0ChiLan1.0
GPC4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X132,726,378 - 132,840,920 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X132,729,491 - 132,844,300 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X122,441,290 - 122,555,192 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X132,746,525 - 132,860,422 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX132,746,519 - 132,860,420 (-)EnsemblpanPan2panpan1.1
GPC4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X104,098,316 - 104,215,883 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX104,100,571 - 104,216,103 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_TashaX90,208,572 - 90,326,089 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0X105,957,616 - 106,075,266 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX105,957,991 - 106,074,114 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X103,371,062 - 103,488,678 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X105,240,314 - 105,354,255 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X105,019,896 - 105,137,230 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Gpc4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X102,280,494 - 102,392,469 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366911,564,833 - 1,677,482 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366911,564,872 - 1,676,378 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPC4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX109,306,368 - 109,421,785 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1X109,306,489 - 109,421,947 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X125,341,052 - 125,453,788 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GPC4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X108,451,082 - 108,570,244 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX108,450,536 - 108,570,214 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606545,975,745 - 46,092,848 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gpc4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479713,002,646 - 13,116,180 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462479713,005,310 - 13,116,414 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Gpc4
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1X114,114,996 - 114,224,377 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Gpc4
2340 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:290
Count of miRNA genes:233
Interacting mature miRNAs:263
Transcripts:ENSMUST00000033450
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208553Wght11_mweight 11 (mouse)X1186623959045360Mouse
27226750Femd9_mfemur midshaft diameter 9, 10 week (mouse)X3333746355845360Mouse
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
1301009Pbwg7_mpostnatal body weight growth 7 (mouse)Not determinedX3911371473113814Mouse
4141565Pbwg21_mpostnatal body weight growth 21 (mouse)Not determinedX3911371473113814Mouse
27226780Femd12_mfemur midshaft diameter 12, 16 week (mouse)X3466365356845360Mouse
13208557Lgth13_mbody length 13 (mouse)X1186623959045360Mouse
1300853Aggr2_maggression 2 (mouse)Not determinedX4907116752259196Mouse
4142200Rtwq1_mreduced testis weight QTL 1 (mouse)Not determined4147706075477203Mouse
1300794Spha2_msperm head anomaly 2 (mouse)Not determinedX3992149886260137Mouse
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
1301278Bdln1_mbody length 1 (mouse)Not determinedX4170210675702218Mouse
1300702Fcsa4_mfemoral cross-sectional area 4 (mouse)Not determinedX4602744480027567Mouse
1301212Bw19_mbody weight QTL 19 (mouse)Not determinedX4637692052412327Mouse
1301351Obq6_mobesity QTL 6 (mouse)Not determinedX5077237570434751Mouse
13208567Bmiq12_mbody mass index QTL 12 (mouse)X3526365377043606Mouse

Markers in Region
Gpc4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv37X49,406,433 - 49,407,724UniSTSGRCm37
MGSCv37X49,406,283 - 49,406,902UniSTSGRCm37
CeleraX39,465,960 - 39,466,737UniSTS
Cytogenetic MapXA5UniSTS
cM MapX16.0UniSTS
cM MapX16.0UniSTS
BB377684  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X52,051,002 - 52,051,149UniSTSGRCm38
MGSCv37X49,404,179 - 49,404,326UniSTSGRCm37
Cytogenetic MapXA5UniSTS
cM MapX16.0UniSTS
Whitehead/MRC_RHX618.74UniSTS
AI385680  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X52,053,559 - 52,053,671UniSTSGRCm38
MGSCv37X49,406,736 - 49,406,848UniSTSGRCm37
CeleraX39,466,571 - 39,466,683UniSTS
Cytogenetic MapXA5UniSTS
cM MapX16.0UniSTS
Whitehead/MRC_RHX619.05UniSTS
X83577  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X52,053,120 - 52,053,281UniSTSGRCm38
MGSCv37X49,406,297 - 49,406,458UniSTSGRCm37
CeleraX39,465,974 - 39,466,293UniSTS
Cytogenetic MapXA5UniSTS
cM MapX UniSTS
Whitehead_YACX UniSTS
AI071251  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X52,053,262 - 52,053,480UniSTSGRCm38
MGSCv37X49,406,439 - 49,406,657UniSTSGRCm37
CeleraX39,466,274 - 39,466,492UniSTS
Cytogenetic MapXA5UniSTS
cM MapX16.0UniSTS
AI661372  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X52,051,655 - 52,051,772UniSTSGRCm38
MGSCv37X49,404,832 - 49,404,949UniSTSGRCm37
Cytogenetic MapXA5UniSTS
cM MapX16.0UniSTS
Whitehead/MRC_RHX617.9UniSTS
Gpc4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X52,053,106 - 52,053,725UniSTSGRCm38
MGSCv37X49,406,283 - 49,406,902UniSTSGRCm37
CeleraX39,465,960 - 39,466,737UniSTS
Cytogenetic MapXA5UniSTS
Gpc4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X52,053,256 - 52,054,547UniSTSGRCm38
MGSCv37X49,406,433 - 49,407,724UniSTSGRCm37
Cytogenetic MapXA5UniSTS
cM MapX16.0UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_008150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011250978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF311610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI892739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK020640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK086914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK142313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL672019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ559580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX088698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX649233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF168390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ187434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN710713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X83577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000033450   ⟹   ENSMUSP00000033450
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX51,141,898 - 51,254,129 (-)Ensembl
GRCm38.p6 EnsemblX52,053,021 - 52,165,252 (-)Ensembl
RefSeq Acc Id: NM_008150   ⟹   NP_032176
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X51,141,895 - 51,253,800 (-)NCBI
GRCm38X52,053,018 - 52,164,923 (-)NCBI
MGSCv37X49,406,195 - 49,518,100 (-)RGD
CeleraX39,465,872 - 39,577,854 (-)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011250978   ⟹   XP_011249280
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X51,139,884 - 51,234,582 (-)NCBI
GRCm38X52,051,007 - 52,145,705 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_032176 (Get FASTA)   NCBI Sequence Viewer  
  XP_011249280 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH06622 (Get FASTA)   NCBI Sequence Viewer  
  CAA58560 (Get FASTA)   NCBI Sequence Viewer  
  EDL29111 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000033450
  ENSMUSP00000033450.3
GenBank Protein P51655 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_032176   ⟸   NM_008150
- Peptide Label: precursor
- UniProtKB: Q923C8 (UniProtKB/Swiss-Prot),   P51655 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011249280   ⟸   XM_011250978
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSMUSP00000033450   ⟸   ENSMUST00000033450

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P51655-F1-model_v2 AlphaFold P51655 1-557 view protein structure

Promoters
RGD ID:6845436
Promoter ID:MM_KWN:60286
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Liver,   MEF_B6
Transcripts:UC009TEE.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X49,404,521 - 49,406,397 (-)MPROMDB
RGD ID:6845793
Promoter ID:MM_KWN:60287
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000114860,   UC009TEF.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X49,517,876 - 49,518,467 (-)MPROMDB
RGD ID:13680454
Promoter ID:EPDNEW_M24376
Type:initiation region
Name:Gpc4_1
Description:Mus musculus glypican 4 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X52,164,902 - 52,164,962EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:104902 AgrOrtholog
Ensembl Genes ENSMUSG00000031119 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000033450 ENTREZGENE
  ENSMUST00000033450.3 UniProtKB/Swiss-Prot
InterPro Glypican UniProtKB/Swiss-Prot
  Glypican_CS UniProtKB/Swiss-Prot
KEGG Report mmu:14735 UniProtKB/Swiss-Prot
MGD MGI:104902 ENTREZGENE
NCBI Gene 14735 ENTREZGENE
PANTHER PTHR10822 UniProtKB/Swiss-Prot
  PTHR10822:SF25 UniProtKB/Swiss-Prot
Pfam Glypican UniProtKB/Swiss-Prot
PhenoGen Gpc4 PhenoGen
PROSITE GLYPICAN UniProtKB/Swiss-Prot
UniProt GPC4_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q923C8 ENTREZGENE
UniProt Secondary Q923C8 UniProtKB/Swiss-Prot